Experiment set6S9 for Pseudomonas sp. RS175

Compare to:

Sodium succinate dibasic hexahydrate carbon source

200 most important genes:

  gene name fitness t score description  
PFR28_05016 -5.7 -15.1 Glutamate synthase [NADPH] small chain compare
PFR28_05015 -5.5 -24.2 Glutamate synthase [NADPH] large chain compare
PFR28_02821 -5.3 -18.3 3-isopropylmalate dehydrogenase compare
PFR28_04932 -5.0 -6.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PFR28_02824 -4.8 -8.1 3-isopropylmalate dehydratase large subunit compare
PFR28_03697 -4.8 -12.4 Ketol-acid reductoisomerase (NADP(+)) compare
PFR28_05125 -4.8 -11.1 ATP phosphoribosyltransferase regulatory subunit compare
PFR28_04930 -4.6 -10.3 Imidazole glycerol phosphate synthase subunit HisH compare
PFR28_02823 -4.5 -3.0 3-isopropylmalate dehydratase small subunit 1 compare
PFR28_00186 -4.4 -7.4 ATP phosphoribosyltransferase compare
PFR28_03363 -4.3 -17.2 Ornithine carbamoyltransferase 1, anabolic compare
PFR28_02810 -4.2 -17.6 O-succinylhomoserine sulfhydrylase compare
PFR28_04278 -4.2 -9.3 Dihydroxy-acid dehydratase compare
PFR28_03241 -4.2 -13.1 C4-dicarboxylate transport protein 2 conserved
PFR28_04245 -4.1 -17.3 Homoserine O-succinyltransferase compare
PFR28_04834 -4.1 -19.8 L-threonine dehydratase biosynthetic IlvA compare
PFR28_04246 -4.1 -13.7 Bifunctional methionine biosynthesis protein MetXA/MetW compare
PFR28_02603 -4.1 -7.3 Siroheme synthase compare
PFR28_05105 -4.1 -5.5 Phosphoserine phosphatase SerB2 compare
PFR28_00305 -4.0 -9.4 2-isopropylmalate synthase compare
PFR28_04929 -3.9 -7.0 Histidine biosynthesis bifunctional protein HisB compare
PFR28_04889 -3.8 -9.7 C4-dicarboxylate transport transcriptional regulatory protein DctD conserved
PFR28_01365 -3.7 -7.2 hypothetical protein compare
PFR28_01366 -3.7 -11.0 Sulfite reductase [ferredoxin] compare
PFR28_03856 -3.6 -2.5 LPS-assembly lipoprotein LptE compare
PFR28_00187 -3.5 -11.2 Histidinol dehydrogenase compare
PFR28_04030 -3.5 -8.5 hypothetical protein compare
PFR28_04832 -3.5 -13.8 putative phosphatase compare
PFR28_04628 -3.4 -2.3 Thiol:disulfide interchange protein DsbA compare
PFR28_05005 -3.4 -10.9 NADP-dependent malic enzyme compare
PFR28_00188 -3.2 -11.8 Histidinol-phosphate aminotransferase compare
PFR28_03012 -3.1 -9.1 Phosphate acyltransferase compare
PFR28_03635 -3.0 -2.1 Malate:quinone oxidoreductase compare
PFR28_05244 -3.0 -14.5 Copper-exporting P-type ATPase compare
PFR28_02811 -2.9 -6.1 Amidophosphoribosyltransferase compare
PFR28_04933 -2.8 -2.5 Imidazole glycerol phosphate synthase subunit HisF compare
PFR28_04202 -2.7 -3.2 5,10-methylenetetrahydrofolate reductase compare
PFR28_04842 -2.7 -6.1 D-3-phosphoglycerate dehydrogenase compare
PFR28_03218 -2.6 -5.3 Phosphoribosylglycinamide formyltransferase compare
PFR28_00966 -2.6 -13.6 HTH-type transcriptional regulator CysB compare
PFR28_03612 -2.5 -3.3 Cell division protein ZapE compare
PFR28_01572 -2.5 -2.6 hypothetical protein compare
PFR28_03388 -2.4 -12.6 Quinolinate synthase A compare
PFR28_04986 -2.4 -6.7 Phosphoribosyl-AMP cyclohydrolase compare
PFR28_04436 -2.4 -7.4 hypothetical protein compare
PFR28_03698 -2.4 -9.1 Acetolactate synthase isozyme 3 small subunit compare
PFR28_04985 -2.3 -4.7 Phosphoribosyl-ATP pyrophosphatase compare
PFR28_05204 -2.3 -3.7 Sulfite reductase [ferredoxin] compare
PFR28_05201 -2.2 -4.6 Precorrin-6Y C(5,15)-methyltransferase [decarboxylating] compare
PFR28_03533 -2.2 -2.0 DNA-binding protein HU 1 compare
PFR28_00602 -2.2 -1.5 hypothetical protein compare
PFR28_03463 -2.1 -2.0 hypothetical protein compare
PFR28_03699 -2.1 -1.4 Acetolactate synthase isozyme 3 large subunit compare
PFR28_00098 -2.0 -8.8 Nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
PFR28_04698 -2.0 -8.0 hypothetical protein compare
PFR28_04425 -2.0 -9.1 2-iminobutanoate/2-iminopropanoate deaminase compare
PFR28_02608 -2.0 -1.8 DNA translocase FtsK compare
PFR28_02094 -2.0 -2.3 Glycerol-3-phosphate regulon repressor compare
PFR28_05212 -1.8 -9.8 Sensor histidine kinase RcsC compare
PFR28_03272 -1.8 -3.0 Translational regulator CsrA2 compare
PFR28_04103 -1.8 -7.1 Biotin synthase compare
PFR28_04308 -1.7 -1.2 Amino-acid acetyltransferase compare
PFR28_04944 -1.7 -4.9 DNA-binding transcriptional regulator NtrC compare
PFR28_03412 -1.7 -4.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PFR28_04890 -1.7 -6.2 C4-dicarboxylate transport sensor protein DctB conserved
PFR28_04072 -1.6 -3.0 Bifunctional folate synthesis protein compare
PFR28_01084 -1.5 -2.2 hypothetical protein compare
PFR28_03217 -1.5 -1.0 Phosphoribosylformylglycinamidine cyclo-ligase compare
PFR28_01113 -1.5 -3.5 DNA topoisomerase 1 compare
PFR28_00193 -1.5 -8.0 Sulfate adenylyltransferase subunit 2 compare
PFR28_00572 -1.5 -5.7 HTH-type transcriptional regulator HexR compare
PFR28_00194 -1.4 -7.8 Bifunctional enzyme CysN/CysC compare
PFR28_04565 -1.4 -9.1 Protein RarD compare
PFR28_02298 -1.4 -2.6 hypothetical protein compare
PFR28_03266 -1.4 -2.7 hypothetical protein compare
PFR28_03721 -1.4 -3.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFR28_04633 -1.4 -2.8 Alginate biosynthesis sensor protein KinB compare
PFR28_03178 -1.3 -2.6 tRNA-Asp compare
PFR28_03876 -1.3 -7.0 Inner membrane protein YohK compare
PFR28_03719 -1.3 -3.2 Poly(A) polymerase I compare
PFR28_04102 -1.3 -6.2 8-amino-7-oxononanoate synthase compare
PFR28_04491 -1.3 -4.1 putative acyl-CoA thioester hydrolase compare
PFR28_00241 -1.2 -3.2 Disulfide bond formation protein B compare
PFR28_01592 -1.2 -4.0 hypothetical protein compare
PFR28_02800 -1.2 -1.0 hypothetical protein compare
PFR28_01376 -1.2 -1.5 hypothetical protein compare
PFR28_04208 -1.2 -4.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PFR28_05199 -1.2 -3.9 Precorrin-6A reductase compare
PFR28_02507 -1.2 -1.9 Phosphoglycolate phosphatase compare
PFR28_05139 -1.2 -1.7 hypothetical protein compare
PFR28_04585 -1.2 -4.4 Chromosome partitioning protein ParA compare
PFR28_03902 -1.2 -1.1 hypothetical protein compare
PFR28_03206 -1.2 -5.4 Cobalamin biosynthesis protein CobD compare
PFR28_01156 -1.2 -4.6 hypothetical protein compare
PFR28_03282 -1.1 -5.2 Arginine N-succinyltransferase subunit alpha compare
PFR28_03209 -1.1 -3.7 Corrinoid adenosyltransferase compare
PFR28_02201 -1.1 -1.8 Chaperone SurA compare
PFR28_00988 -1.1 -6.2 Sensor histidine kinase RcsC compare
PFR28_00839 -1.1 -3.4 hypothetical protein compare
PFR28_03877 -1.1 -3.8 Holin-like protein CidA compare
PFR28_03865 -1.1 -4.8 Endolytic peptidoglycan transglycosylase RlpA compare
PFR28_02838 -1.1 -6.8 Aromatic-amino-acid aminotransferase compare
PFR28_03837 -1.1 -5.1 Leucine-responsive regulatory protein compare
PFR28_04874 -1.1 -5.1 Phosphoenolpyruvate carboxykinase (ATP) compare
PFR28_01960 -1.1 -2.5 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase compare
PFR28_02846 -1.1 -4.2 Adaptive-response sensory-kinase SasA compare
PFR28_02820 -1.0 -4.4 Aspartate-semialdehyde dehydrogenase compare
PFR28_01374 -1.0 -3.6 hypothetical protein compare
PFR28_02430 -1.0 -2.1 Hydrogen cyanide synthase subunit HcnA compare
PFR28_01460 -1.0 -0.8 Glutamine transport ATP-binding protein GlnQ compare
PFR28_04100 -1.0 -4.7 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PFR28_04418 -1.0 -1.8 Exodeoxyribonuclease compare
PFR28_04071 -1.0 -1.0 Multifunctional CCA protein compare
PFR28_03208 -1.0 -6.0 Cobyrinate a,c-diamide synthase compare
PFR28_01230 -1.0 -1.9 Lon protease compare
PFR28_05091 -1.0 -7.3 Phosphomethylpyrimidine synthase compare
PFR28_00561 -1.0 -1.5 Phosphogluconate dehydratase compare
PFR28_03200 -1.0 -3.8 Adenosylcobinamide-GDP ribazoletransferase compare
PFR28_05206 -1.0 -6.2 Precorrin-2 C(20)-methyltransferase compare
PFR28_04992 -1.0 -0.9 hypothetical protein compare
PFR28_00472 -0.9 -2.0 Protein RecA compare
PFR28_00926 -0.9 -1.4 hypothetical protein compare
PFR28_03203 -0.9 -3.4 Bifunctional adenosylcobalamin biosynthesis protein CobP compare
PFR28_03344 -0.9 -1.0 Ion-translocating oxidoreductase complex subunit A compare
PFR28_03844 -0.9 -2.4 Thiamine-phosphate synthase compare
PFR28_01377 -0.9 -5.6 Aerobic cobaltochelatase subunit CobN compare
PFR28_02091 -0.9 -6.6 ABC transporter ATP-binding/permease protein YojI compare
PFR28_01227 -0.9 -1.9 Trigger factor compare
PFR28_01594 -0.9 -1.4 hypothetical protein compare
PFR28_03843 -0.9 -3.9 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFR28_03130 -0.9 -2.4 Streptothricin hydrolase compare
PFR28_03653 -0.9 -1.8 Molybdopterin-synthase adenylyltransferase compare
PFR28_01891 -0.9 -3.4 HTH-type transcriptional regulator GltR compare
PFR28_01666 -0.8 -2.3 hypothetical protein compare
PFR28_02734 -0.8 -3.2 Ribose operon repressor compare
PFR28_04252 -0.8 -4.5 Thiazole synthase compare
PFR28_04566 -0.8 -5.2 4-chloro-allylglycine synthase compare
PFR28_04865 -0.8 -1.3 Glutamate--cysteine ligase compare
PFR28_01777 -0.8 -1.2 putative trans-3-hydroxy-L-proline dehydratase compare
PFR28_00139 -0.8 -4.6 HTH-type transcriptional regulator LutR compare
PFR28_00689 -0.8 -6.5 L-aspartate oxidase compare
PFR28_01809 -0.8 -0.8 hypothetical protein compare
PFR28_01723 -0.8 -2.2 Response regulator receiver protein CpdR compare
PFR28_04699 -0.8 -5.2 Oligopeptidase A compare
PFR28_00709 -0.8 -2.7 hypothetical protein compare
PFR28_05207 -0.8 -3.6 Siroheme synthase compare
PFR28_02237 -0.8 -1.6 hypothetical protein compare
PFR28_04489 -0.8 -4.4 Phosphate-binding protein PstS compare
PFR28_01190 -0.8 -0.8 hypothetical protein compare
PFR28_00500 -0.8 -1.4 hypothetical protein compare
PFR28_03625 -0.7 -5.5 Metalloprotease LoiP compare
PFR28_01134 -0.7 -0.8 Transcriptional activator protein CopR compare
PFR28_00525 -0.7 -3.1 Outer membrane lipoprotein SlyB compare
PFR28_03519 -0.7 -2.9 Membrane-bound lytic murein transglycosylase F compare
PFR28_02529 -0.7 -2.9 hypothetical protein compare
PFR28_01631 -0.7 -2.6 Nitrate/nitrite transporter NarK compare
PFR28_01583 -0.7 -0.8 hypothetical protein compare
PFR28_05197 -0.7 -1.9 hypothetical protein compare
PFR28_05205 -0.7 -2.0 Precorrin-8X methylmutase compare
PFR28_02092 -0.7 -2.5 hypothetical protein compare
PFR28_04443 -0.7 -4.9 hypothetical protein compare
PFR28_04236 -0.7 -3.8 Bifunctional protein PyrR compare
PFR28_04343 -0.7 -1.2 Glutamine transport ATP-binding protein GlnQ compare
PFR28_00331 -0.7 -2.6 Tyrosine recombinase XerD compare
PFR28_00529 -0.7 -2.0 hypothetical protein compare
PFR28_01249 -0.7 -3.6 HTH-type transcriptional regulator KipR compare
PFR28_00873 -0.7 -3.3 hypothetical protein compare
PFR28_01751 -0.7 -2.1 putative type II secretion system protein HxcR compare
PFR28_02889 -0.7 -2.2 hypothetical protein compare
PFR28_04708 -0.7 -2.6 hypothetical protein compare
PFR28_04521 -0.7 -2.3 HTH-type transcriptional regulator HexR compare
PFR28_01825 -0.7 -2.1 hypothetical protein compare
PFR28_03132 -0.7 -2.2 putative DNA endonuclease SmrA compare
PFR28_01091 -0.7 -5.5 Cbb3-type cytochrome c oxidase subunit CcoN1 compare
PFR28_04584 -0.7 -1.9 putative chromosome-partitioning protein ParB compare
PFR28_00060 -0.7 -3.4 hypothetical protein compare
PFR28_04461 -0.7 -1.7 hypothetical protein compare
PFR28_01088 -0.7 -4.2 Cbb3-type cytochrome c oxidase subunit CcoP2 compare
PFR28_01267 -0.7 -2.3 Arginine N-succinyltransferase subunit beta compare
PFR28_02283 -0.6 -1.2 hypothetical protein compare
PFR28_03369 -0.6 -3.6 Glycerol-3-phosphate regulon repressor compare
PFR28_00593 -0.6 -5.1 HTH-type transcriptional regulator GntR compare
PFR28_01080 -0.6 -4.1 Oxygen-independent coproporphyrinogen III oxidase compare
PFR28_04926 -0.6 -3.1 hypothetical protein compare
PFR28_02809 -0.6 -1.6 Glucose 1-dehydrogenase 1 compare
PFR28_04119 -0.6 -1.6 putative GST-like protein YibF compare
PFR28_03916 -0.6 -1.6 hypothetical protein compare
PFR28_01369 -0.6 -3.7 Methionine synthase compare
PFR28_01092 -0.6 -1.7 Cbb3-type cytochrome c oxidase subunit CcoP1 compare
PFR28_01313 -0.6 -1.0 hypothetical protein compare
PFR28_02241 -0.6 -1.6 Copper-binding lipoprotein NosL compare
PFR28_02561 -0.6 -1.7 RutC family protein YjgH compare
PFR28_03127 -0.6 -2.3 Esterase EstD compare
PFR28_00247 -0.6 -1.8 hypothetical protein compare
PFR28_02763 -0.6 -0.8 hypothetical protein compare
PFR28_00068 -0.6 -0.5 hypothetical protein compare
PFR28_00204 -0.6 -1.6 hypothetical protein compare
PFR28_04447 -0.6 -5.0 Serine/threonine-protein kinase PknD compare
PFR28_00962 -0.6 -3.2 Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive compare
PFR28_00678 -0.6 -1.4 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Sodium succinate dibasic hexahydrate in Pseudomonas sp. RS175

For carbon source Sodium succinate dibasic hexahydrate across organisms