Experiment set6S8 for Pseudomonas sp. RS175

Compare to:

Sodium succinate dibasic hexahydrate carbon source

200 most detrimental genes:

  gene name fitness t score description  
PFR28_03724 +3.1 14.5 Glucose-6-phosphate isomerase compare
PFR28_05075 +3.0 20.8 hypothetical protein compare
PFR28_05070 +2.5 4.0 nebramycin 5 compare
PFR28_00918 +2.5 13.8 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) compare
PFR28_01410 +2.4 17.9 Response regulator GacA compare
PFR28_03227 +2.3 15.5 Signal transduction histidine-protein kinase BarA compare
PFR28_00299 +2.2 2.1 hypothetical protein compare
PFR28_01370 +2.1 20.1 hypothetical protein compare
PFR28_01930 +1.9 4.6 HTH-type transcriptional regulator McbR compare
PFR28_00427 +1.9 15.7 RNA polymerase sigma factor RpoS compare
PFR28_03631 +1.8 3.0 hypothetical protein compare
PFR28_04089 +1.8 2.2 PqqA binding protein compare
PFR28_04060 +1.8 13.4 N-acetylmuramate/N-acetylglucosamine kinase compare
PFR28_01380 +1.8 9.2 hypothetical protein compare
PFR28_03846 +1.8 8.6 hypothetical protein compare
PFR28_04830 +1.7 13.2 Phosphoenolpyruvate-dependent phosphotransferase system compare
PFR28_00296 +1.7 2.7 Cytoskeleton protein RodZ compare
PFR28_00176 +1.6 1.5 Lipopolysaccharide export system protein LptC compare
PFR28_05074 +1.5 9.9 hypothetical protein compare
PFR28_03219 +1.5 11.2 hypothetical protein compare
PFR28_04031 +1.5 11.4 Anhydro-N-acetylmuramic acid kinase compare
PFR28_00926 +1.5 3.2 hypothetical protein compare
PFR28_00325 +1.5 3.3 Inner membrane protein YpjD compare
PFR28_00069 +1.4 3.5 Outer membrane protein assembly factor BamE compare
PFR28_01119 +1.4 4.1 Beta-hexosaminidase compare
PFR28_04059 +1.4 9.5 N-acetylmuramate alpha-1-phosphate uridylyltransferase compare
PFR28_00182 +1.3 6.3 Intermembrane phospholipid transport system binding protein MlaC compare
PFR28_00932 +1.3 11.6 UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase compare
PFR28_04233 +1.3 3.6 hypothetical protein compare
PFR28_04979 +1.3 9.2 Glucans biosynthesis glucosyltransferase H compare
PFR28_03077 +1.3 11.2 Vitamin B12 transporter BtuB compare
PFR28_01139 +1.3 9.0 Intermembrane phospholipid transport system lipoprotein MlaA compare
PFR28_05077 +1.3 6.6 D-inositol-3-phosphate glycosyltransferase compare
PFR28_00930 +1.2 6.2 GDP-perosamine synthase compare
PFR28_00181 +1.2 7.1 Intermembrane phospholipid transport system binding protein MlaD compare
PFR28_05067 +1.2 2.1 hypothetical protein compare
PFR28_00179 +1.2 6.4 Intermembrane phospholipid transport system ATP-binding protein MlaF compare
PFR28_03079 +1.2 8.9 Sensor histidine kinase RcsC compare
PFR28_03615 +1.2 5.3 hypothetical protein compare
PFR28_00169 +1.2 3.7 Phosphocarrier protein NPr compare
PFR28_00495 +1.1 8.9 hypothetical protein compare
PFR28_04958 +1.1 1.7 hypothetical protein compare
PFR28_03245 +1.1 6.6 hypothetical protein compare
PFR28_00170 +1.1 4.9 RNase adapter protein RapZ compare
PFR28_03243 +1.1 5.3 Virulence sensor histidine kinase PhoQ compare
PFR28_02678 +1.1 1.7 hypothetical protein compare
PFR28_00925 +1.1 2.4 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase compare
PFR28_02872 +1.1 1.1 hypothetical protein compare
PFR28_01015 +1.1 1.8 '3'-5' exonuclease DinG' transl_table=11 compare
PFR28_00332 +1.1 7.4 Thiol:disulfide interchange protein DsbC compare
PFR28_00180 +1.1 4.3 Intermembrane phospholipid transport system permease protein MlaE compare
PFR28_00900 +1.1 4.1 N-acetylmuramic acid 6-phosphate phosphatase compare
PFR28_04978 +1.0 5.8 Glucans biosynthesis protein G compare
PFR28_00356 +1.0 4.6 Protein-glutamate methylesterase/protein-glutamine glutaminase compare
PFR28_00928 +1.0 2.0 putative sugar transferase EpsL compare
PFR28_01907 +1.0 2.1 hypothetical protein compare
PFR28_05071 +1.0 1.4 D-inositol-3-phosphate glycosyltransferase compare
PFR28_05079 +1.0 4.3 hypothetical protein compare
PFR28_00917 +1.0 6.4 UDP-N-acetyl-D-mannosamine dehydrogenase compare
PFR28_00100 +1.0 3.9 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
PFR28_03860 +1.0 3.5 putative murein peptide carboxypeptidase compare
PFR28_04418 +1.0 2.5 Exodeoxyribonuclease compare
PFR28_01110 +1.0 3.4 Fatty acid oxidation complex subunit alpha compare
PFR28_02703 +1.0 3.1 hypothetical protein compare
PFR28_00292 +1.0 2.3 Protein IscX compare
PFR28_02435 +1.0 3.0 Porin-like protein NicP compare
PFR28_00820 +1.0 4.6 3-oxoacyl-[acyl-carrier-protein] synthase 3 compare
PFR28_00927 +0.9 5.8 D-inositol-3-phosphate glycosyltransferase compare
PFR28_03386 +0.9 2.4 Major cold shock protein CspA compare
PFR28_02484 +0.9 4.3 UTP--glucose-1-phosphate uridylyltransferase compare
PFR28_05000 +0.9 1.0 Cell division protein FtsN compare
PFR28_04369 +0.9 1.5 hypothetical protein compare
PFR28_00476 +0.9 1.6 hypothetical protein compare
PFR28_02212 +0.9 1.9 Ubiquinone biosynthesis accessory factor UbiJ compare
PFR28_02727 +0.9 2.2 Cold shock protein CapB compare
PFR28_02358 +0.9 1.5 hypothetical protein compare
PFR28_04286 +0.9 4.5 hypothetical protein compare
PFR28_05131 +0.9 2.6 '23S rRNA (guanosine-2'-O-)-methyltransferase RlmB' transl_table=11 compare
PFR28_05104 +0.8 2.4 hypothetical protein compare
PFR28_01176 +0.8 2.7 hypothetical protein compare
PFR28_03345 +0.8 2.8 Ion-translocating oxidoreductase complex subunit B compare
PFR28_00271 +0.8 2.1 hypothetical protein compare
PFR28_04887 +0.8 1.6 '3'(2'),5'-bisphosphate nucleotidase CysQ' transl_table=11 compare
PFR28_00342 +0.8 2.0 hypothetical protein compare
PFR28_02704 +0.8 1.0 hypothetical protein compare
PFR28_04185 +0.8 3.8 hypothetical protein compare
PFR28_02324 +0.8 1.6 hypothetical protein compare
PFR28_03891 +0.8 4.6 Protein DedA compare
PFR28_00780 +0.8 0.9 hypothetical protein compare
PFR28_00156 +0.8 2.6 Rod shape-determining protein MreD compare
PFR28_03536 +0.8 1.9 hypothetical protein compare
PFR28_03304 +0.8 0.9 hypothetical protein compare
PFR28_00074 +0.8 2.7 Chaperone protein DnaJ compare
PFR28_00913 +0.8 3.3 Integration host factor subunit beta compare
PFR28_01159 +0.8 4.4 hypothetical protein compare
PFR28_04618 +0.8 2.2 High-affinity zinc uptake system membrane protein ZnuB compare
PFR28_01165 +0.8 3.4 hypothetical protein compare
PFR28_00791 +0.8 5.5 Outer membrane protein assembly factor BamA compare
PFR28_01427 +0.8 1.5 hypothetical protein compare
PFR28_04262 +0.8 2.8 Ribosomal RNA small subunit methyltransferase D compare
PFR28_02117 +0.8 2.7 hypothetical protein compare
PFR28_01175 +0.8 2.8 hypothetical protein compare
PFR28_00405 +0.8 1.1 hypothetical protein compare
PFR28_00452 +0.8 1.5 hypothetical protein compare
PFR28_01157 +0.8 1.3 hypothetical protein compare
PFR28_00916 +0.8 5.0 UDP-N-acetylglucosamine 2-epimerase compare
PFR28_01270 +0.7 3.4 hypothetical protein compare
PFR28_00626 +0.7 1.9 3-carboxy-cis,cis-muconate cycloisomerase compare
PFR28_02027 +0.7 3.7 HTH-type transcriptional regulator DmlR compare
PFR28_01279 +0.7 4.9 hypothetical protein compare
PFR28_02800 +0.7 0.8 hypothetical protein compare
PFR28_05232 +0.7 0.8 hypothetical protein compare
PFR28_01957 +0.7 1.1 hypothetical protein compare
PFR28_01897 +0.7 1.5 HTH-type transcriptional regulator MtrA compare
PFR28_03822 +0.7 1.1 Acetyltransferase compare
PFR28_04347 +0.7 4.7 hypothetical protein compare
PFR28_01842 +0.7 2.3 Toluene-4-sulfonate monooxygenase system iron-sulfur subunit TsaM1 compare
PFR28_01129 +0.7 3.1 hypothetical protein compare
PFR28_02975 +0.7 1.5 hypothetical protein compare
PFR28_03955 +0.7 1.7 hypothetical protein compare
PFR28_04900 +0.7 5.4 hypothetical protein compare
PFR28_00601 +0.7 1.5 hypothetical protein compare
PFR28_03736 +0.7 1.3 hypothetical protein compare
PFR28_00588 +0.7 3.2 hypothetical protein compare
PFR28_03954 +0.7 1.9 hypothetical protein compare
PFR28_00722 +0.7 1.3 hypothetical protein compare
PFR28_02203 +0.7 2.4 hypothetical protein compare
PFR28_02693 +0.7 2.5 hypothetical protein compare
PFR28_02136 +0.7 1.8 hypothetical protein compare
PFR28_03300 +0.7 2.6 CTP synthase compare
PFR28_00503 +0.7 1.4 Histidine transport ATP-binding protein HisP compare
PFR28_00766 +0.7 1.4 hypothetical protein compare
PFR28_03244 +0.7 2.4 Transcriptional regulatory protein PhoP compare
PFR28_03323 +0.7 2.0 Transcriptional regulatory protein CpxR compare
PFR28_02250 +0.7 2.5 hypothetical protein compare
PFR28_01421 +0.7 2.2 putative GST-like protein YibF compare
PFR28_03651 +0.6 4.6 Lipid A deacylase PagL compare
PFR28_04349 +0.6 2.3 Glyoxalase ElbB compare
PFR28_01463 +0.6 2.8 hypothetical protein compare
PFR28_01587 +0.6 1.1 hypothetical protein compare
PFR28_03533 +0.6 0.9 DNA-binding protein HU 1 compare
PFR28_01744 +0.6 1.4 hypothetical protein compare
PFR28_01507 +0.6 2.0 Dihydroanticapsin 7-dehydrogenase compare
PFR28_02960 +0.6 2.9 hypothetical protein compare
PFR28_02268 +0.6 0.9 hypothetical protein compare
PFR28_02386 +0.6 2.3 Protein hcp1 compare
PFR28_01327 +0.6 2.2 Protein YciE compare
PFR28_01561 +0.6 1.0 hypothetical protein compare
PFR28_03959 +0.6 3.3 Outer membrane protein W compare
PFR28_04884 +0.6 1.8 Potassium binding protein Kbp compare
PFR28_03232 +0.6 1.5 putative protein YfgD compare
PFR28_01111 +0.6 2.4 3-ketoacyl-CoA thiolase compare
PFR28_01415 +0.6 1.6 hypothetical protein compare
PFR28_03900 +0.6 0.9 hypothetical protein compare
PFR28_01219 +0.6 2.0 hypothetical protein compare
PFR28_00462 +0.6 2.3 hypothetical protein compare
PFR28_00968 +0.6 1.0 hypothetical protein compare
PFR28_02414 +0.6 1.3 RNA polymerase-binding transcription factor DksA compare
PFR28_02551 +0.6 2.1 hypothetical protein compare
PFR28_04936 +0.6 1.7 Carboxy-terminal processing protease CtpB compare
PFR28_04941 +0.6 2.1 Protein-export protein SecB compare
PFR28_04604 +0.6 3.0 hypothetical protein compare
PFR28_02974 +0.6 2.5 Peptidoglycan-associated lipoprotein compare
PFR28_01978 +0.6 1.6 hypothetical protein compare
PFR28_00890 +0.6 3.5 hypothetical protein compare
PFR28_04399 +0.6 2.7 D-amino acid dehydrogenase 1 compare
PFR28_01806 +0.6 1.6 Linearmycin resistance ATP-binding protein LnrL compare
PFR28_03665 +0.6 3.0 hypothetical protein compare
PFR28_03768 +0.6 2.8 hypothetical protein compare
PFR28_02251 +0.6 2.0 hypothetical protein compare
PFR28_00089 +0.6 0.9 Transcription termination/antitermination protein NusA compare
PFR28_02367 +0.6 1.5 Cysteine/O-acetylserine efflux protein compare
PFR28_03957 +0.6 3.8 hypothetical protein compare
PFR28_03696 +0.6 3.4 hypothetical protein compare
PFR28_01340 +0.6 2.7 Glutaminase 2 compare
PFR28_01718 +0.6 1.1 Response regulator receiver protein CpdR compare
PFR28_02686 +0.6 1.3 Prophage DNA-packing protein NohA compare
PFR28_02142 +0.6 1.7 hypothetical protein compare
PFR28_01993 +0.6 2.2 Type I secretion system membrane fusion protein PrsE compare
PFR28_04707 +0.6 1.7 hypothetical protein compare
PFR28_01160 +0.6 2.1 hypothetical protein compare
PFR28_03760 +0.6 1.8 hypothetical protein compare
PFR28_02719 +0.6 1.2 Integration host factor subunit alpha compare
PFR28_02004 +0.6 2.8 hypothetical protein compare
PFR28_05184 +0.6 1.8 Lipopolysaccharide export system ATP-binding protein LptB compare
PFR28_01269 +0.6 2.7 Putrescine importer PuuP compare
PFR28_01273 +0.6 3.3 hypothetical protein compare
PFR28_00700 +0.6 2.0 Outer membrane protein assembly factor BamC compare
PFR28_00615 +0.6 2.1 hypothetical protein compare
PFR28_02241 +0.6 1.6 Copper-binding lipoprotein NosL compare
PFR28_02051 +0.6 2.3 hypothetical protein compare
PFR28_01179 +0.6 2.4 hypothetical protein compare
PFR28_00148 +0.6 1.5 hypothetical protein compare
PFR28_03246 +0.6 2.6 hypothetical protein compare
PFR28_03272 +0.6 1.0 Translational regulator CsrA2 compare
PFR28_04133 +0.5 2.6 Sarcosine oxidase subunit delta compare
PFR28_01326 +0.5 0.7 HTH-type transcriptional regulator GltC compare
PFR28_02008 +0.5 0.7 hypothetical protein compare
PFR28_03961 +0.5 2.1 dTDP-4-dehydrorhamnose reductase compare
PFR28_02699 +0.5 3.2 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Sodium succinate dibasic hexahydrate in Pseudomonas sp. RS175

For carbon source Sodium succinate dibasic hexahydrate across organisms