Experiment set6S51 for Pseudomonas sp. RS175

Compare to:

Xanthosine dihydrate carbon source

200 most important genes:

  gene name fitness t score description  
PFR28_04933 -6.3 -3.9 Imidazole glycerol phosphate synthase subunit HisF compare
PFR28_03145 -5.3 -3.7 allantoicase compare
PFR28_03143 -5.0 -14.0 hypothetical protein compare
PFR28_00186 -4.9 -7.4 ATP phosphoribosyltransferase compare
PFR28_01365 -4.8 -6.6 hypothetical protein compare
PFR28_04246 -4.8 -14.2 Bifunctional methionine biosynthesis protein MetXA/MetW compare
PFR28_04071 -4.5 -1.5 Multifunctional CCA protein compare
PFR28_03344 -4.5 -1.5 Ion-translocating oxidoreductase complex subunit A compare
PFR28_04932 -4.5 -7.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PFR28_04245 -4.4 -15.0 Homoserine O-succinyltransferase compare
PFR28_01006 -4.4 -9.8 Molybdopterin molybdenumtransferase compare
PFR28_05125 -4.4 -9.8 ATP phosphoribosyltransferase regulatory subunit compare
PFR28_05015 -4.4 -25.8 Glutamate synthase [NADPH] large chain compare
PFR28_04832 -4.3 -14.0 putative phosphatase compare
PFR28_02821 -4.2 -18.2 3-isopropylmalate dehydrogenase compare
PFR28_03860 -4.1 -5.8 putative murein peptide carboxypeptidase compare
PFR28_05016 -4.0 -13.6 Glutamate synthase [NADPH] small chain compare
PFR28_03144 -4.0 -9.7 Uric acid degradation bifunctional protein PucL compare
PFR28_04435 -4.0 -6.0 ATP-dependent DNA helicase RecG compare
PFR28_03111 -3.9 -14.2 Hydroxypyruvate isomerase conserved
PFR28_02737 -3.9 -5.4 Ribose import binding protein RbsB compare
PFR28_00188 -3.8 -14.2 Histidinol-phosphate aminotransferase compare
PFR28_05105 -3.8 -7.2 Phosphoserine phosphatase SerB2 compare
PFR28_03697 -3.8 -15.0 Ketol-acid reductoisomerase (NADP(+)) compare
PFR28_01142 -3.7 -16.3 Transaldolase compare
PFR28_02733 -3.7 -3.7 Ribokinase compare
PFR28_04278 -3.6 -11.6 Dihydroxy-acid dehydratase compare
PFR28_03714 -3.6 -15.9 RNA polymerase-binding transcription factor DksA compare
PFR28_00573 -3.6 -11.5 Glucose-6-phosphate 1-dehydrogenase compare
PFR28_04628 -3.6 -2.5 Thiol:disulfide interchange protein DsbA compare
PFR28_03142 -3.6 -4.9 5-hydroxyisourate hydrolase compare
PFR28_02824 -3.6 -9.4 3-isopropylmalate dehydratase large subunit compare
PFR28_04986 -3.6 -7.1 Phosphoribosyl-AMP cyclohydrolase compare
PFR28_03653 -3.6 -2.8 Molybdopterin-synthase adenylyltransferase compare
PFR28_02449 -3.5 -14.7 putative branched-chain-amino-acid aminotransferase compare
PFR28_00695 -3.5 -2.2 Sulfur carrier protein TusA compare
PFR28_02810 -3.5 -14.4 O-succinylhomoserine sulfhydrylase compare
PFR28_03363 -3.5 -15.3 Ornithine carbamoyltransferase 1, anabolic compare
PFR28_01366 -3.4 -11.3 Sulfite reductase [ferredoxin] compare
PFR28_04929 -3.4 -7.7 Histidine biosynthesis bifunctional protein HisB compare
PFR28_02736 -3.4 -8.5 Arabinose import ATP-binding protein AraG compare
PFR28_03843 -3.3 -8.3 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFR28_04930 -3.3 -10.3 Imidazole glycerol phosphate synthase subunit HisH compare
PFR28_03110 -3.3 -13.4 Glyoxylate carboligase conserved
PFR28_01113 -3.3 -2.3 DNA topoisomerase 1 compare
PFR28_00305 -3.3 -9.6 2-isopropylmalate synthase compare
PFR28_00241 -3.3 -3.9 Disulfide bond formation protein B compare
PFR28_04380 -3.3 -2.2 Transcriptional regulator SutA compare
PFR28_04675 -3.2 -1.7 hypothetical protein compare
PFR28_03429 -3.1 -6.2 Thiamine-phosphate synthase compare
PFR28_05071 -3.0 -3.0 D-inositol-3-phosphate glycosyltransferase compare
PFR28_03844 -3.0 -4.5 Thiamine-phosphate synthase compare
PFR28_03856 -3.0 -2.9 LPS-assembly lipoprotein LptE compare
PFR28_04985 -3.0 -4.5 Phosphoribosyl-ATP pyrophosphatase compare
PFR28_03146 -3.0 -7.2 Ureidoglycolate lyase compare
PFR28_02811 -3.0 -5.6 Amidophosphoribosyltransferase compare
PFR28_03596 -2.9 -3.4 Transcriptional regulator MraZ compare
PFR28_00187 -2.9 -12.0 Histidinol dehydrogenase compare
PFR28_02603 -2.8 -8.2 Siroheme synthase compare
PFR28_03698 -2.8 -8.9 Acetolactate synthase isozyme 3 small subunit compare
PFR28_04030 -2.8 -11.6 hypothetical protein compare
PFR28_04202 -2.8 -3.8 5,10-methylenetetrahydrofolate reductase compare
PFR28_02823 -2.8 -2.3 3-isopropylmalate dehydratase small subunit 1 compare
PFR28_03388 -2.8 -12.3 Quinolinate synthase A compare
PFR28_02484 -2.8 -5.5 UTP--glucose-1-phosphate uridylyltransferase compare
PFR28_01063 -2.7 -16.0 putative xanthine dehydrogenase subunit D conserved
PFR28_05091 -2.7 -12.6 Phosphomethylpyrimidine synthase compare
PFR28_05244 -2.7 -14.4 Copper-exporting P-type ATPase compare
PFR28_00069 -2.7 -3.2 Outer membrane protein assembly factor BamE compare
PFR28_03413 -2.7 -3.1 Holliday junction ATP-dependent DNA helicase RuvA compare
PFR28_00928 -2.7 -3.3 putative sugar transferase EpsL compare
PFR28_01064 -2.7 -11.4 hypothetical protein conserved
PFR28_04842 -2.7 -5.9 D-3-phosphoglycerate dehydrogenase compare
PFR28_03635 -2.6 -4.0 Malate:quinone oxidoreductase compare
PFR28_00851 -2.6 -1.7 Flagellum site-determining protein YlxH compare
PFR28_04252 -2.5 -6.1 Thiazole synthase compare
PFR28_02608 -2.5 -1.7 DNA translocase FtsK compare
PFR28_01410 -2.5 -7.9 Response regulator GacA compare
PFR28_03865 -2.5 -8.7 Endolytic peptidoglycan transglycosylase RlpA compare
PFR28_01062 -2.4 -7.7 hypothetical protein conserved
PFR28_03000 -2.4 -7.9 'GTP 3',8-cyclase' transl_table=11 compare
PFR28_03147 -2.4 -10.6 hypothetical protein compare
PFR28_00193 -2.3 -6.7 Sulfate adenylyltransferase subunit 2 compare
PFR28_00194 -2.3 -8.4 Bifunctional enzyme CysN/CysC compare
PFR28_04565 -2.3 -13.4 Protein RarD compare
PFR28_05212 -2.2 -10.4 Sensor histidine kinase RcsC compare
PFR28_00098 -2.2 -6.4 Nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
PFR28_00988 -2.2 -8.2 Sensor histidine kinase RcsC compare
PFR28_02127 -2.2 -1.8 hypothetical protein compare
PFR28_04633 -2.2 -3.8 Alginate biosynthesis sensor protein KinB compare
PFR28_05139 -2.2 -2.1 hypothetical protein compare
PFR28_00839 -2.2 -6.2 hypothetical protein compare
PFR28_03551 -2.2 -5.4 Cyclic pyranopterin monophosphate synthase compare
PFR28_02735 -2.2 -3.6 Ribose import permease protein RbsC compare
PFR28_04902 -2.1 -6.4 Inner membrane protein YgaZ compare
PFR28_04103 -2.1 -8.0 Biotin synthase compare
PFR28_00159 -2.1 -9.2 hypothetical protein compare
PFR28_00983 -2.1 -6.2 Protease HtpX compare
PFR28_02496 -2.1 -6.4 Molybdate-binding protein ModA compare
PFR28_03130 -2.0 -1.7 Streptothricin hydrolase compare
PFR28_01118 -2.0 -1.4 hypothetical protein compare
PFR28_01092 -2.0 -3.5 Cbb3-type cytochrome c oxidase subunit CcoP1 compare
PFR28_03414 -2.0 -2.3 Crossover junction endodeoxyribonuclease RuvC compare
PFR28_01209 -2.0 -6.0 Uric acid transporter UacT conserved
PFR28_03724 -2.0 -3.9 Glucose-6-phosphate isomerase compare
PFR28_05000 -1.9 -1.6 Cell division protein FtsN compare
PFR28_04834 -1.9 -11.1 L-threonine dehydratase biosynthetic IlvA compare
PFR28_00966 -1.9 -9.4 HTH-type transcriptional regulator CysB compare
PFR28_03223 -1.9 -8.9 GTP pyrophosphokinase compare
PFR28_04308 -1.9 -1.3 Amino-acid acetyltransferase compare
PFR28_04936 -1.9 -3.4 Carboxy-terminal processing protease CtpB compare
PFR28_03699 -1.8 -2.5 Acetolactate synthase isozyme 3 large subunit compare
PFR28_02497 -1.8 -7.8 Molybdenum transport system permease protein ModB compare
PFR28_00930 -1.8 -5.6 GDP-perosamine synthase compare
PFR28_01930 -1.8 -2.7 HTH-type transcriptional regulator McbR compare
PFR28_00926 -1.8 -1.8 hypothetical protein compare
PFR28_03549 -1.8 -1.7 Molybdopterin synthase catalytic subunit compare
PFR28_03227 -1.7 -6.6 Signal transduction histidine-protein kinase BarA compare
PFR28_00918 -1.7 -4.6 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) compare
PFR28_03721 -1.7 -3.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFR28_04564 -1.7 -9.4 Aspartate-semialdehyde dehydrogenase compare
PFR28_03666 -1.7 -1.1 hypothetical protein compare
PFR28_04903 -1.7 -4.1 hypothetical protein compare
PFR28_05005 -1.7 -7.5 NADP-dependent malic enzyme compare
PFR28_02048 -1.7 -2.8 hypothetical protein compare
PFR28_00089 -1.7 -1.5 Transcription termination/antitermination protein NusA compare
PFR28_03463 -1.7 -1.7 hypothetical protein compare
PFR28_00561 -1.7 -1.1 Phosphogluconate dehydratase compare
PFR28_03837 -1.6 -6.9 Leucine-responsive regulatory protein compare
PFR28_02846 -1.6 -5.9 Adaptive-response sensory-kinase SasA compare
PFR28_00100 -1.6 -4.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
PFR28_00448 -1.6 -1.4 hypothetical protein compare
PFR28_04059 -1.6 -8.3 N-acetylmuramate alpha-1-phosphate uridylyltransferase compare
PFR28_00689 -1.6 -10.6 L-aspartate oxidase compare
PFR28_04064 -1.6 -3.0 Ribosomal RNA small subunit methyltransferase A compare
PFR28_01084 -1.6 -1.9 hypothetical protein compare
PFR28_03846 -1.6 -4.2 hypothetical protein compare
PFR28_04461 -1.6 -2.5 hypothetical protein compare
PFR28_00900 -1.5 -3.5 N-acetylmuramic acid 6-phosphate phosphatase compare
PFR28_04233 -1.5 -1.1 hypothetical protein compare
PFR28_00915 -1.5 -6.2 Chain length determinant protein compare
PFR28_03369 -1.5 -4.7 Glycerol-3-phosphate regulon repressor compare
PFR28_00855 -1.5 -5.2 hypothetical protein compare
PFR28_01319 -1.5 -7.9 1,4-alpha-glucan branching enzyme GlgB compare
PFR28_00180 -1.5 -3.7 Intermembrane phospholipid transport system permease protein MlaE compare
PFR28_03417 -1.5 -1.2 hypothetical protein compare
PFR28_03278 -1.5 -3.3 hypothetical protein compare
PFR28_03631 -1.5 -1.1 hypothetical protein compare
PFR28_01005 -1.5 -4.0 Molybdenum cofactor biosynthesis protein B compare
PFR28_01094 -1.5 -4.7 hypothetical protein compare
PFR28_01265 -1.4 -4.7 (R)-benzylsuccinyl-CoA dehydrogenase compare
PFR28_03282 -1.4 -5.4 Arginine N-succinyltransferase subunit alpha compare
PFR28_01312 -1.4 -2.6 HTH-type transcriptional regulator NorG compare
PFR28_02925 -1.4 -6.4 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) compare
PFR28_00916 -1.4 -8.0 UDP-N-acetylglucosamine 2-epimerase compare
PFR28_02734 -1.4 -2.9 Ribose operon repressor compare
PFR28_04521 -1.4 -4.0 HTH-type transcriptional regulator HexR compare
PFR28_00074 -1.4 -4.5 Chaperone protein DnaJ compare
PFR28_03883 -1.4 -4.5 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase compare
PFR28_00721 -1.4 -1.2 hypothetical protein compare
PFR28_03784 -1.4 -4.9 Energy-dependent translational throttle protein EttA compare
PFR28_04584 -1.3 -2.8 putative chromosome-partitioning protein ParB compare
PFR28_04866 -1.3 -2.5 1,4-dihydroxy-2-naphthoyl-CoA hydrolase compare
PFR28_02201 -1.3 -2.3 Chaperone SurA compare
PFR28_01527 -1.3 -5.3 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PFR28_05079 -1.3 -4.4 hypothetical protein compare
PFR28_02616 -1.3 -8.3 Isocitrate dehydrogenase [NADP] compare
PFR28_00854 -1.3 -3.0 Protein phosphatase CheZ compare
PFR28_03217 -1.3 -0.9 Phosphoribosylformylglycinamidine cyclo-ligase compare
PFR28_01876 -1.3 -1.3 hypothetical protein compare
PFR28_03778 -1.3 -1.1 hypothetical protein compare
PFR28_01095 -1.3 -5.1 Cbb3-type cytochrome c oxidase subunit CcoN1 compare
PFR28_01081 -1.3 -0.9 hypothetical protein compare
PFR28_01376 -1.3 -1.1 hypothetical protein compare
PFR28_02241 -1.3 -1.6 Copper-binding lipoprotein NosL compare
PFR28_01119 -1.3 -3.2 Beta-hexosaminidase compare
PFR28_00932 -1.3 -9.7 UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase compare
PFR28_01578 -1.3 -2.6 HTH-type transcriptional regulator LutR compare
PFR28_01080 -1.3 -6.5 Oxygen-independent coproporphyrinogen III oxidase compare
PFR28_02838 -1.3 -5.9 Aromatic-amino-acid aminotransferase compare
PFR28_04585 -1.3 -4.6 Chromosome partitioning protein ParA compare
PFR28_01933 -1.3 -1.3 Putative tartrate transporter compare
PFR28_04963 -1.3 -6.0 HTH-type transcriptional repressor NagR compare
PFR28_01960 -1.3 -2.8 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase compare
PFR28_00861 -1.2 -6.8 Chemotaxis protein CheW compare
PFR28_00730 -1.2 -2.2 5-oxoprolinase subunit C compare
PFR28_00403 -1.2 -2.6 Regulator of sigma-E protease RseP compare
PFR28_03304 -1.2 -0.8 hypothetical protein compare
PFR28_04566 -1.2 -6.8 4-chloro-allylglycine synthase compare
PFR28_03902 -1.2 -0.9 hypothetical protein compare
PFR28_04060 -1.2 -5.8 N-acetylmuramate/N-acetylglucosamine kinase compare
PFR28_02719 -1.2 -1.4 Integration host factor subunit alpha compare
PFR28_03012 -1.2 -3.8 Phosphate acyltransferase compare
PFR28_03148 -1.2 -7.7 hypothetical protein compare
PFR28_03412 -1.2 -3.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PFR28_01294 -1.1 -2.2 hypothetical protein compare
PFR28_00927 -1.1 -5.2 D-inositol-3-phosphate glycosyltransferase compare
PFR28_02613 -1.1 -5.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
PFR28_03877 -1.1 -2.6 Holin-like protein CidA compare
PFR28_03208 -1.1 -5.1 Cobyrinate a,c-diamide synthase compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source Xanthosine in Pseudomonas sp. RS175

For carbon source Xanthosine across organisms