Experiment set6S5 for Pseudomonas sp. RS175

Compare to:

Sodium pyruvate carbon source

200 most important genes:

  gene name fitness t score description  
PFR28_00186 -6.2 -4.3 ATP phosphoribosyltransferase compare
PFR28_02824 -5.9 -5.8 3-isopropylmalate dehydratase large subunit compare
PFR28_05015 -5.5 -24.5 Glutamate synthase [NADPH] large chain compare
PFR28_02821 -5.2 -19.4 3-isopropylmalate dehydrogenase compare
PFR28_04932 -5.1 -7.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PFR28_05016 -5.0 -17.7 Glutamate synthase [NADPH] small chain compare
PFR28_03697 -5.0 -12.4 Ketol-acid reductoisomerase (NADP(+)) compare
PFR28_01365 -4.9 -6.7 hypothetical protein compare
PFR28_04929 -4.6 -7.0 Histidine biosynthesis bifunctional protein HisB compare
PFR28_02823 -4.5 -2.6 3-isopropylmalate dehydratase small subunit 1 compare
PFR28_04930 -4.5 -11.2 Imidazole glycerol phosphate synthase subunit HisH compare
PFR28_05125 -4.4 -8.7 ATP phosphoribosyltransferase regulatory subunit compare
PFR28_03363 -4.4 -18.4 Ornithine carbamoyltransferase 1, anabolic compare
PFR28_04246 -4.3 -13.2 Bifunctional methionine biosynthesis protein MetXA/MetW compare
PFR28_02603 -4.3 -7.1 Siroheme synthase compare
PFR28_04834 -4.3 -19.3 L-threonine dehydratase biosynthetic IlvA compare
PFR28_02810 -4.2 -15.9 O-succinylhomoserine sulfhydrylase compare
PFR28_04245 -4.2 -15.6 Homoserine O-succinyltransferase compare
PFR28_01366 -4.1 -11.0 Sulfite reductase [ferredoxin] compare
PFR28_04986 -4.1 -6.8 Phosphoribosyl-AMP cyclohydrolase compare
PFR28_04832 -3.9 -14.4 putative phosphatase compare
PFR28_05105 -3.9 -6.5 Phosphoserine phosphatase SerB2 compare
PFR28_04278 -3.8 -11.9 Dihydroxy-acid dehydratase compare
PFR28_04985 -3.7 -5.1 Phosphoribosyl-ATP pyrophosphatase compare
PFR28_00187 -3.7 -11.6 Histidinol dehydrogenase compare
PFR28_04518 -3.7 -10.0 2-oxoglutarate carboxylase small subunit compare
PFR28_00188 -3.6 -13.8 Histidinol-phosphate aminotransferase compare
PFR28_04517 -3.6 -14.6 Oxaloacetate decarboxylase alpha chain compare
PFR28_00305 -3.5 -10.0 2-isopropylmalate synthase compare
PFR28_04519 -3.5 -8.8 HTH-type transcriptional activator CmpR compare
PFR28_03218 -3.5 -6.7 Phosphoribosylglycinamide formyltransferase compare
PFR28_04628 -3.4 -2.4 Thiol:disulfide interchange protein DsbA compare
PFR28_02811 -3.3 -5.4 Amidophosphoribosyltransferase compare
PFR28_00098 -3.2 -9.4 Nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
PFR28_03635 -3.1 -2.1 Malate:quinone oxidoreductase compare
PFR28_03012 -3.0 -8.4 Phosphate acyltransferase compare
PFR28_04030 -3.0 -11.7 hypothetical protein compare
PFR28_03388 -2.9 -14.4 Quinolinate synthase A compare
PFR28_04842 -2.9 -6.5 D-3-phosphoglycerate dehydrogenase compare
PFR28_04565 -2.8 -13.9 Protein RarD compare
PFR28_03463 -2.7 -1.8 hypothetical protein compare
PFR28_03698 -2.7 -9.3 Acetolactate synthase isozyme 3 small subunit compare
PFR28_03130 -2.5 -1.6 Streptothricin hydrolase compare
PFR28_04103 -2.5 -8.0 Biotin synthase compare
PFR28_00193 -2.5 -10.7 Sulfate adenylyltransferase subunit 2 compare
PFR28_03282 -2.5 -8.5 Arginine N-succinyltransferase subunit alpha compare
PFR28_00966 -2.4 -11.3 HTH-type transcriptional regulator CysB compare
PFR28_03856 -2.4 -3.2 LPS-assembly lipoprotein LptE compare
PFR28_04933 -2.4 -4.2 Imidazole glycerol phosphate synthase subunit HisF compare
PFR28_00054 -2.4 -1.3 hypothetical protein compare
PFR28_04208 -2.2 -6.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PFR28_03721 -2.2 -3.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFR28_04202 -2.2 -4.4 5,10-methylenetetrahydrofolate reductase compare
PFR28_04102 -2.2 -9.1 8-amino-7-oxononanoate synthase compare
PFR28_04425 -2.2 -8.1 2-iminobutanoate/2-iminopropanoate deaminase compare
PFR28_03191 -2.1 -1.5 hypothetical protein compare
PFR28_03699 -2.0 -2.4 Acetolactate synthase isozyme 3 large subunit compare
PFR28_01618 -2.0 -6.2 Oxygen regulatory protein NreC conserved
PFR28_03844 -2.0 -4.9 Thiamine-phosphate synthase compare
PFR28_04252 -2.0 -5.3 Thiazole synthase compare
PFR28_00194 -2.0 -8.9 Bifunctional enzyme CysN/CysC compare
PFR28_04071 -2.0 -1.3 Multifunctional CCA protein compare
PFR28_04566 -1.9 -9.8 4-chloro-allylglycine synthase compare
PFR28_01460 -1.9 -1.0 Glutamine transport ATP-binding protein GlnQ compare
PFR28_01619 -1.9 -6.2 hypothetical protein conserved
PFR28_03865 -1.9 -7.2 Endolytic peptidoglycan transglycosylase RlpA compare
PFR28_01372 -1.9 -2.7 Precorrin-4 C(11)-methyltransferase compare
PFR28_02478 -1.8 -3.1 hypothetical protein compare
PFR28_04944 -1.8 -4.9 DNA-binding transcriptional regulator NtrC compare
PFR28_00472 -1.8 -3.7 Protein RecA compare
PFR28_04100 -1.8 -7.1 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PFR28_02608 -1.8 -1.9 DNA translocase FtsK compare
PFR28_04308 -1.8 -1.2 Amino-acid acetyltransferase compare
PFR28_03530 -1.7 -1.7 hypothetical protein compare
PFR28_05091 -1.7 -11.7 Phosphomethylpyrimidine synthase compare
PFR28_02838 -1.7 -7.9 Aromatic-amino-acid aminotransferase compare
PFR28_03203 -1.6 -4.7 Bifunctional adenosylcobalamin biosynthesis protein CobP compare
PFR28_03102 -1.6 -9.7 Cation/acetate symporter ActP compare
PFR28_04564 -1.6 -9.1 Aspartate-semialdehyde dehydrogenase compare
PFR28_01060 -1.6 -4.5 HTH-type transcriptional repressor NanR compare
PFR28_03208 -1.6 -7.1 Cobyrinate a,c-diamide synthase compare
PFR28_01084 -1.5 -2.3 hypothetical protein compare
PFR28_03217 -1.5 -1.0 Phosphoribosylformylglycinamidine cyclo-ligase compare
PFR28_01081 -1.5 -1.0 hypothetical protein compare
PFR28_05139 -1.5 -1.8 hypothetical protein compare
PFR28_03837 -1.5 -5.6 Leucine-responsive regulatory protein compare
PFR28_01378 -1.5 -2.9 Magnesium-chelatase 38 kDa subunit compare
PFR28_00851 -1.5 -1.6 Flagellum site-determining protein YlxH compare
PFR28_04436 -1.4 -5.4 hypothetical protein compare
PFR28_04992 -1.4 -1.3 hypothetical protein compare
PFR28_03387 -1.4 -1.8 hypothetical protein compare
PFR28_03369 -1.4 -5.0 Glycerol-3-phosphate regulon repressor compare
PFR28_05036 -1.4 -1.1 Acyl carrier protein compare
PFR28_04874 -1.4 -5.2 Phosphoenolpyruvate carboxykinase (ATP) compare
PFR28_03304 -1.4 -1.0 hypothetical protein compare
PFR28_03204 -1.4 -4.9 Cobyric acid synthase compare
PFR28_01312 -1.3 -1.9 HTH-type transcriptional regulator NorG compare
PFR28_00498 -1.3 -2.2 Cold shock protein CapB compare
PFR28_01114 -1.3 -3.6 hypothetical protein compare
PFR28_04567 -1.3 -7.6 hypothetical protein compare
PFR28_00695 -1.3 -1.4 Sulfur carrier protein TusA compare
PFR28_05005 -1.2 -5.7 NADP-dependent malic enzyme compare
PFR28_03344 -1.2 -1.0 Ion-translocating oxidoreductase complex subunit A compare
PFR28_04339 -1.2 -2.5 Glc operon transcriptional activator compare
PFR28_04232 -1.2 -3.3 Glutathione synthetase compare
PFR28_00529 -1.2 -2.8 hypothetical protein compare
PFR28_02727 -1.2 -2.8 Cold shock protein CapB compare
PFR28_00448 -1.2 -1.7 hypothetical protein compare
PFR28_03200 -1.2 -3.6 Adenosylcobinamide-GDP ribazoletransferase compare
PFR28_05207 -1.2 -4.2 Siroheme synthase compare
PFR28_03429 -1.2 -4.2 Thiamine-phosphate synthase compare
PFR28_03788 -1.2 -5.1 P-loop guanosine triphosphatase YjiA conserved
PFR28_03714 -1.1 -7.4 RNA polymerase-binding transcription factor DksA compare
PFR28_03739 -1.1 -1.6 hypothetical protein compare
PFR28_00839 -1.1 -3.8 hypothetical protein compare
PFR28_00006 -1.1 -2.7 RecBCD enzyme subunit RecC compare
PFR28_02314 -1.1 -2.6 Fumarate and nitrate reduction regulatory protein compare
PFR28_04064 -1.1 -1.9 Ribosomal RNA small subunit methyltransferase A compare
PFR28_03206 -1.1 -4.9 Cobalamin biosynthesis protein CobD compare
PFR28_05204 -1.1 -1.6 Sulfite reductase [ferredoxin] compare
PFR28_00807 -1.1 -4.0 Flagellar P-ring protein compare
PFR28_00033 -1.1 -1.6 hypothetical protein compare
PFR28_01230 -1.1 -2.0 Lon protease compare
PFR28_03666 -1.1 -1.0 hypothetical protein compare
PFR28_04633 -1.1 -1.9 Alginate biosynthesis sensor protein KinB compare
PFR28_04945 -1.1 -4.0 Sensory histidine kinase/phosphatase NtrB compare
PFR28_00561 -1.1 -1.5 Phosphogluconate dehydratase compare
PFR28_03843 -1.1 -3.8 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFR28_01095 -1.0 -3.7 Cbb3-type cytochrome c oxidase subunit CcoN1 compare
PFR28_05206 -1.0 -5.7 Precorrin-2 C(20)-methyltransferase compare
PFR28_03259 -1.0 -2.4 hypothetical protein compare
PFR28_03209 -1.0 -2.3 Corrinoid adenosyltransferase compare
PFR28_03189 -1.0 -6.7 Sensor histidine kinase RcsC compare
PFR28_02484 -1.0 -3.9 UTP--glucose-1-phosphate uridylyltransferase compare
PFR28_05212 -1.0 -5.2 Sensor histidine kinase RcsC compare
PFR28_02517 -1.0 -3.3 Protein-glutamate methylesterase/protein-glutamine glutaminase compare
PFR28_04040 -1.0 -1.6 Protein YhfA compare
PFR28_00572 -1.0 -5.3 HTH-type transcriptional regulator HexR compare
PFR28_04584 -1.0 -1.9 putative chromosome-partitioning protein ParB compare
PFR28_04902 -1.0 -3.6 Inner membrane protein YgaZ compare
PFR28_02949 -1.0 -2.0 hypothetical protein compare
PFR28_01118 -1.0 -1.7 hypothetical protein compare
PFR28_04461 -1.0 -1.9 hypothetical protein compare
PFR28_04621 -1.0 -3.4 High-affinity zinc uptake system protein ZnuA conserved
PFR28_05199 -1.0 -2.3 Precorrin-6A reductase compare
PFR28_00241 -0.9 -2.3 Disulfide bond formation protein B compare
PFR28_01749 -0.9 -1.7 hypothetical protein compare
PFR28_03103 -0.9 -3.6 Inner membrane protein YjcH compare
PFR28_00478 -0.9 -2.3 Transcriptional regulatory protein DegU compare
PFR28_04381 -0.9 -2.2 hypothetical protein compare
PFR28_03653 -0.9 -2.2 Molybdopterin-synthase adenylyltransferase compare
PFR28_00139 -0.9 -4.2 HTH-type transcriptional regulator LutR compare
PFR28_02507 -0.9 -1.5 Phosphoglycolate phosphatase compare
PFR28_03778 -0.9 -0.9 hypothetical protein compare
PFR28_04675 -0.9 -0.8 hypothetical protein compare
PFR28_03612 -0.9 -2.0 Cell division protein ZapE compare
PFR28_01374 -0.9 -3.1 hypothetical protein compare
PFR28_03202 -0.9 -0.9 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFR28_01744 -0.9 -2.3 hypothetical protein compare
PFR28_00261 -0.9 -1.4 hypothetical protein compare
PFR28_01156 -0.9 -3.9 hypothetical protein compare
PFR28_05201 -0.9 -2.0 Precorrin-6Y C(5,15)-methyltransferase [decarboxylating] compare
PFR28_01369 -0.9 -4.2 Methionine synthase compare
PFR28_03784 -0.9 -3.6 Energy-dependent translational throttle protein EttA compare
PFR28_01154 -0.9 -1.9 hypothetical protein compare
PFR28_02111 -0.9 -1.5 hypothetical protein compare
PFR28_04641 -0.9 -2.6 hypothetical protein compare
PFR28_05068 -0.9 -2.0 hypothetical protein compare
PFR28_00403 -0.9 -2.1 Regulator of sigma-E protease RseP compare
PFR28_00968 -0.9 -1.0 hypothetical protein compare
PFR28_04619 -0.8 -4.4 Zinc import ATP-binding protein ZnuC compare
PFR28_05042 -0.8 -1.4 hypothetical protein compare
PFR28_04569 -0.8 -3.2 HTH-type transcriptional regulator CdhR compare
PFR28_00826 -0.8 -4.1 Flagellar secretion chaperone FliS compare
PFR28_01155 -0.8 -1.4 hypothetical protein compare
PFR28_00856 -0.8 -3.7 Protein-glutamate methylesterase/protein-glutamine glutaminase 1 compare
PFR28_03427 -0.8 -3.2 Sensor histidine kinase RcsC compare
PFR28_04708 -0.8 -2.9 hypothetical protein compare
PFR28_04443 -0.8 -5.0 hypothetical protein compare
PFR28_02693 -0.8 -2.7 hypothetical protein compare
PFR28_05124 -0.8 -2.0 Modulator of FtsH protease HflC compare
PFR28_02846 -0.8 -2.6 Adaptive-response sensory-kinase SasA compare
PFR28_01313 -0.8 -1.7 hypothetical protein compare
PFR28_05181 -0.8 -1.0 Urease subunit gamma compare
PFR28_02372 -0.8 -2.3 hypothetical protein compare
PFR28_00810 -0.8 -5.1 hypothetical protein compare
PFR28_01661 -0.8 -1.1 Delta(1)-pyrroline-2-carboxylate/Delta(1)- piperideine-2-carboxylate reductase compare
PFR28_00823 -0.8 -4.6 Flagellin compare
PFR28_01376 -0.8 -1.0 hypothetical protein compare
PFR28_04485 -0.8 -2.0 Phosphate-specific transport system accessory protein PhoU compare
PFR28_02969 -0.8 -1.2 hypothetical protein compare
PFR28_00276 -0.8 -2.6 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PFR28_00074 -0.8 -2.6 Chaperone protein DnaJ compare
PFR28_02226 -0.8 -2.0 Nitric oxide reductase subunit C compare
PFR28_04420 -0.8 -3.3 Ribonuclease PH compare
PFR28_02298 -0.8 -1.0 hypothetical protein compare
PFR28_00274 -0.8 -2.2 hypothetical protein compare
PFR28_03281 -0.8 -2.7 Arginine N-succinyltransferase subunit beta compare
PFR28_03875 -0.8 -0.8 hypothetical protein compare
PFR28_00842 -0.8 -5.0 Flagellar motor switch protein FliM compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Sodium pyruvate in Pseudomonas sp. RS175

For carbon source Sodium pyruvate across organisms