Experiment set6S44 for Pseudomonas sp. RS175

Compare to:

Inosine carbon source

200 most detrimental genes:

  gene name fitness t score description  
PFR28_05071 +3.4 8.1 D-inositol-3-phosphate glycosyltransferase compare
PFR28_00356 +3.4 10.5 Protein-glutamate methylesterase/protein-glutamine glutaminase compare
PFR28_00837 +2.8 13.0 hypothetical protein compare
PFR28_01370 +2.0 18.8 hypothetical protein compare
PFR28_00405 +1.8 1.8 hypothetical protein compare
PFR28_01380 +1.7 7.7 hypothetical protein compare
PFR28_05058 +1.6 11.1 hypothetical protein compare
PFR28_03243 +1.4 6.6 Virulence sensor histidine kinase PhoQ compare
PFR28_04760 +1.4 8.5 hypothetical protein conserved
PFR28_01176 +1.3 3.9 hypothetical protein compare
PFR28_01159 +1.3 8.3 hypothetical protein compare
PFR28_01177 +1.3 3.4 hypothetical protein compare
PFR28_01184 +1.3 4.2 hypothetical protein compare
PFR28_00332 +1.3 8.6 Thiol:disulfide interchange protein DsbC compare
PFR28_00700 +1.3 4.6 Outer membrane protein assembly factor BamC compare
PFR28_04060 +1.2 8.6 N-acetylmuramate/N-acetylglucosamine kinase compare
PFR28_04224 +1.2 1.8 hypothetical protein compare
PFR28_04059 +1.2 8.2 N-acetylmuramate alpha-1-phosphate uridylyltransferase compare
PFR28_03612 +1.2 3.7 Cell division protein ZapE compare
PFR28_01587 +1.2 2.7 hypothetical protein compare
PFR28_04023 +1.2 2.6 Bifunctional ligase/repressor BirA compare
PFR28_04473 +1.2 2.4 DNA-binding protein HU-beta compare
PFR28_01419 +1.2 1.9 hypothetical protein compare
PFR28_05074 +1.1 7.5 hypothetical protein compare
PFR28_00900 +1.1 4.1 N-acetylmuramic acid 6-phosphate phosphatase compare
PFR28_00791 +1.1 8.4 Outer membrane protein assembly factor BamA compare
PFR28_03240 +1.1 1.7 IS110 family transposase ISPfl1 compare
PFR28_02688 +1.1 1.6 hypothetical protein compare
PFR28_01917 +1.1 2.3 Glutamine transport ATP-binding protein GlnQ compare
PFR28_01162 +1.1 1.6 hypothetical protein compare
PFR28_02127 +1.1 1.1 hypothetical protein compare
PFR28_01175 +1.1 3.7 hypothetical protein compare
PFR28_01189 +1.1 4.0 hypothetical protein compare
PFR28_03244 +1.1 4.2 Transcriptional regulatory protein PhoP compare
PFR28_01166 +1.1 2.9 hypothetical protein compare
PFR28_01161 +1.1 5.8 hypothetical protein compare
PFR28_03511 +1.0 1.8 HTH-type transcriptional repressor NagR compare
PFR28_05077 +1.0 4.8 D-inositol-3-phosphate glycosyltransferase compare
PFR28_00560 +1.0 6.6 Glyceraldehyde-3-phosphate dehydrogenase 1 compare
PFR28_05075 +1.0 5.6 hypothetical protein compare
PFR28_04031 +1.0 7.0 Anhydro-N-acetylmuramic acid kinase compare
PFR28_02872 +1.0 1.0 hypothetical protein compare
PFR28_01879 +1.0 1.3 hypothetical protein compare
PFR28_04233 +1.0 2.4 hypothetical protein compare
PFR28_05070 +0.9 0.8 nebramycin 5 compare
PFR28_04927 +0.9 1.4 PanD regulatory factor compare
PFR28_04144 +0.9 3.4 hypothetical protein compare
PFR28_03822 +0.9 1.6 Acetyltransferase compare
PFR28_00766 +0.9 2.3 hypothetical protein compare
PFR28_05067 +0.9 1.5 hypothetical protein compare
PFR28_02855 +0.9 3.3 Diaminopimelate epimerase compare
PFR28_00693 +0.9 3.4 Periplasmic serine endoprotease DegP compare
PFR28_03219 +0.9 6.5 hypothetical protein compare
PFR28_01167 +0.9 4.2 Putative prophage major tail sheath protein compare
PFR28_02167 +0.9 2.1 hypothetical protein compare
PFR28_01060 +0.9 3.3 HTH-type transcriptional repressor NanR compare
PFR28_00148 +0.9 2.0 hypothetical protein compare
PFR28_00182 +0.9 3.9 Intermembrane phospholipid transport system binding protein MlaC compare
PFR28_00495 +0.9 6.7 hypothetical protein compare
PFR28_01042 +0.9 1.3 hypothetical protein compare
PFR28_00271 +0.9 1.8 hypothetical protein compare
PFR28_03900 +0.9 2.3 hypothetical protein compare
PFR28_00787 +0.9 1.7 hypothetical protein compare
PFR28_01179 +0.8 3.3 hypothetical protein compare
PFR28_04813 +0.8 1.9 hypothetical protein compare
PFR28_04286 +0.8 3.9 hypothetical protein compare
PFR28_03350 +0.8 2.7 hypothetical protein compare
PFR28_04327 +0.8 3.5 hypothetical protein compare
PFR28_03615 +0.8 3.5 hypothetical protein compare
PFR28_04267 +0.8 1.6 hypothetical protein compare
PFR28_04282 +0.8 3.0 putative membrane protein compare
PFR28_00756 +0.8 1.6 ATP-dependent RNA helicase RhlE compare
PFR28_02788 +0.8 1.6 hypothetical protein compare
PFR28_01192 +0.8 5.1 Protein UmuC compare
PFR28_01163 +0.8 4.9 hypothetical protein compare
PFR28_04618 +0.8 2.5 High-affinity zinc uptake system membrane protein ZnuB compare
PFR28_01071 +0.8 3.6 hypothetical protein compare
PFR28_04156 +0.8 2.7 3-keto-5-aminohexanoate cleavage enzyme compare
PFR28_01157 +0.8 0.8 hypothetical protein compare
PFR28_02009 +0.8 1.0 HTH-type transcriptional regulator PgrR compare
PFR28_01269 +0.8 3.9 Putrescine importer PuuP compare
PFR28_01251 +0.8 0.9 ECF RNA polymerase sigma factor EcfG compare
PFR28_04262 +0.8 2.6 Ribosomal RNA small subunit methyltransferase D compare
PFR28_03507 +0.8 1.7 Protein YrdA compare
PFR28_01274 +0.8 2.2 hypothetical protein compare
PFR28_04969 +0.8 2.2 Glycine betaine transport ATP-binding protein OpuAA compare
PFR28_02666 +0.7 2.2 hypothetical protein compare
PFR28_00839 +0.7 2.7 hypothetical protein compare
PFR28_00626 +0.7 1.7 3-carboxy-cis,cis-muconate cycloisomerase compare
PFR28_03598 +0.7 4.8 Penicillin-binding protein activator LpoA compare
PFR28_05193 +0.7 1.9 hypothetical protein compare
PFR28_01427 +0.7 2.2 hypothetical protein compare
PFR28_05120 +0.7 4.2 tRNA dimethylallyltransferase compare
PFR28_00764 +0.7 0.9 hypothetical protein compare
PFR28_01011 +0.7 3.7 hypothetical protein compare
PFR28_01644 +0.7 1.1 hypothetical protein compare
PFR28_00424 +0.7 2.7 '5'-nucleotidase SurE' transl_table=11 compare
PFR28_02732 +0.7 2.1 D-ribose pyranase compare
PFR28_01170 +0.7 4.6 hypothetical protein compare
PFR28_05006 +0.7 6.3 Penicillin-binding protein 1A compare
PFR28_03245 +0.7 3.4 hypothetical protein compare
PFR28_01129 +0.7 3.0 hypothetical protein compare
PFR28_02684 +0.7 1.7 hypothetical protein compare
PFR28_01185 +0.7 2.3 hypothetical protein compare
PFR28_03108 +0.7 3.5 HTH-type transcriptional regulator RutR compare
PFR28_01656 +0.7 1.7 hypothetical protein compare
PFR28_02510 +0.7 1.0 Chemotaxis protein CheY compare
PFR28_00294 +0.7 1.6 Dual-specificity RNA methyltransferase RlmN compare
PFR28_03651 +0.7 4.5 Lipid A deacylase PagL compare
PFR28_01188 +0.7 3.5 hypothetical protein compare
PFR28_03814 +0.6 2.7 hypothetical protein compare
PFR28_03425 +0.6 1.3 hypothetical protein compare
PFR28_02435 +0.6 1.3 Porin-like protein NicP compare
PFR28_02077 +0.6 1.3 Galactose 1-dehydrogenase compare
PFR28_01572 +0.6 1.0 hypothetical protein compare
PFR28_01586 +0.6 2.6 hypothetical protein compare
PFR28_05000 +0.6 1.6 Cell division protein FtsN compare
PFR28_00909 +0.6 1.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFR28_02048 +0.6 1.5 hypothetical protein compare
PFR28_03413 +0.6 1.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PFR28_00277 +0.6 0.9 Queuine tRNA-ribosyltransferase compare
PFR28_05046 +0.6 0.9 hypothetical protein compare
PFR28_00767 +0.6 3.0 hypothetical protein compare
PFR28_04586 +0.6 2.6 Ribosomal RNA small subunit methyltransferase G compare
PFR28_02905 +0.6 1.9 hypothetical protein compare
PFR28_03890 +0.6 2.3 hypothetical protein compare
PFR28_04347 +0.6 4.0 hypothetical protein compare
PFR28_00522 +0.6 2.4 Peptidoglycan-associated lipoprotein compare
PFR28_05051 +0.6 0.9 hypothetical protein compare
PFR28_01174 +0.6 2.0 hypothetical protein compare
PFR28_03404 +0.6 1.7 7-carboxy-7-deazaguanine synthase compare
PFR28_01171 +0.6 3.0 hypothetical protein compare
PFR28_00436 +0.6 1.1 hypothetical protein compare
PFR28_04434 +0.6 3.1 Hydrogen peroxide-inducible genes activator compare
PFR28_00272 +0.6 2.6 hypothetical protein compare
PFR28_00018 +0.6 2.9 Na(+), Li(+), K(+)/H(+) antiporter compare
PFR28_01333 +0.6 2.1 hypothetical protein compare
PFR28_01485 +0.6 1.9 hypothetical protein compare
PFR28_01610 +0.6 1.4 hypothetical protein compare
PFR28_03666 +0.6 0.6 hypothetical protein compare
PFR28_01897 +0.6 1.4 HTH-type transcriptional regulator MtrA compare
PFR28_05176 +0.6 1.9 Chaperone modulatory protein CbpM compare
PFR28_00634 +0.6 2.1 hypothetical protein compare
PFR28_03403 +0.6 2.8 7-cyano-7-deazaguanine synthase compare
PFR28_00876 +0.6 1.1 hypothetical protein compare
PFR28_00473 +0.6 0.9 Regulatory protein RecX compare
PFR28_01182 +0.6 0.6 hypothetical protein compare
PFR28_01381 +0.6 1.4 hypothetical protein compare
PFR28_01168 +0.5 2.1 hypothetical protein compare
PFR28_02615 +0.5 2.0 hypothetical protein compare
PFR28_00458 +0.5 2.0 hypothetical protein compare
PFR28_03517 +0.5 2.6 GTP cyclohydrolase 1 type 2 compare
PFR28_01268 +0.5 2.7 Arginine N-succinyltransferase subunit alpha compare
PFR28_02189 +0.5 1.9 putative membrane transporter protein YfcA compare
PFR28_03650 +0.5 1.0 hypothetical protein compare
PFR28_00181 +0.5 2.9 Intermembrane phospholipid transport system binding protein MlaD compare
PFR28_01582 +0.5 2.0 Alpha-ketoglutaric semialdehyde dehydrogenase compare
PFR28_00179 +0.5 2.1 Intermembrane phospholipid transport system ATP-binding protein MlaF compare
PFR28_03033 +0.5 3.4 Inner membrane transport permease YadH compare
PFR28_04287 +0.5 3.5 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase compare
PFR28_01470 +0.5 1.0 Transcriptional regulatory protein WalR compare
PFR28_02251 +0.5 1.4 hypothetical protein compare
PFR28_02718 +0.5 1.8 hypothetical protein compare
PFR28_01774 +0.5 1.3 hypothetical protein compare
PFR28_04400 +0.5 3.7 Leucine-responsive regulatory protein compare
PFR28_00601 +0.5 1.7 hypothetical protein compare
PFR28_04706 +0.5 1.5 hypothetical protein compare
PFR28_02242 +0.5 1.6 putative ABC transporter permease protein NosY compare
PFR28_02027 +0.5 2.6 HTH-type transcriptional regulator DmlR compare
PFR28_03034 +0.5 2.5 putative ABC transporter ATP-binding protein YadG compare
PFR28_00031 +0.5 2.1 hypothetical protein compare
PFR28_01332 +0.5 2.7 Zinc transporter ZupT compare
PFR28_00425 +0.5 3.0 Protein-L-isoaspartate O-methyltransferase compare
PFR28_00896 +0.5 4.0 hypothetical protein compare
PFR28_00613 +0.5 0.7 hypothetical protein compare
PFR28_01783 +0.5 2.5 HTH-type transcriptional activator RhaS compare
PFR28_01139 +0.5 3.2 Intermembrane phospholipid transport system lipoprotein MlaA compare
PFR28_02008 +0.5 1.0 hypothetical protein compare
PFR28_01327 +0.5 1.6 Protein YciE compare
PFR28_01566 +0.5 1.8 Arsenic resistance transcriptional regulator ArsR1 compare
PFR28_04604 +0.5 3.1 hypothetical protein compare
PFR28_04358 +0.5 1.3 hypothetical protein compare
PFR28_02131 +0.5 1.0 Response regulator protein TmoT compare
PFR28_02374 +0.5 2.0 Universal stress protein E compare
PFR28_00476 +0.5 1.2 hypothetical protein compare
PFR28_00044 +0.5 0.8 hypothetical protein compare
PFR28_04598 +0.5 3.3 hypothetical protein compare
PFR28_01507 +0.5 1.5 Dihydroanticapsin 7-dehydrogenase compare
PFR28_01077 +0.5 1.4 Recombination protein RecR compare
PFR28_01191 +0.5 1.5 Protein UmuD compare
PFR28_04548 +0.5 1.6 Ubiquinone biosynthesis O-methyltransferase, mitochondrial compare
PFR28_03192 +0.5 0.8 hypothetical protein compare
PFR28_03167 +0.5 3.1 hypothetical protein compare
PFR28_04678 +0.5 1.4 hypothetical protein compare
PFR28_00089 +0.5 0.5 Transcription termination/antitermination protein NusA compare
PFR28_02016 +0.5 1.5 HTH-type transcriptional regulator HdfR compare
PFR28_00371 +0.5 1.7 hypothetical protein compare
PFR28_04812 +0.5 1.1 hypothetical protein compare
PFR28_04719 +0.5 1.2 hypothetical protein compare
PFR28_00180 +0.5 1.6 Intermembrane phospholipid transport system permease protein MlaE compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source Inosine in Pseudomonas sp. RS175

For carbon source Inosine across organisms