Experiment set6S4 for Escherichia coli ECOR27

Compare to:

Bas91

200 most important genes:

  gene name fitness t score description  
NOLOHH_16470 yecA -5.0 -3.4 UPF0149 family protein YecA compare
NOLOHH_09835 obgE -4.6 -1.8 GTPase ObgE compare
NOLOHH_05490 hupA -3.6 -2.4 DNA-binding protein HU-alpha compare
NOLOHH_23485 seqA -3.4 -2.3 replication initiation negative regulator SeqA compare
NOLOHH_18960 ddpA -3.2 -3.0 putative D,D-dipeptide-binding periplasmic protein DdpA compare
NOLOHH_06530 corA -3.1 -2.1 magnesium/cobalt transporter CorA compare
NOLOHH_07575 rfaF -2.9 -2.8 ADP-heptose--LPS heptosyltransferase RfaF compare
NOLOHH_05815 metL -2.9 -11.6 bifunctional aspartate kinase/homoserine dehydrogenase II compare
NOLOHH_01380 pgpA -2.8 -1.6 phosphatidylglycerophosphatase A compare
NOLOHH_23310 odhB -2.7 -1.8 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
NOLOHH_18060 rsxD -2.6 -2.5 electron transport complex subunit RsxD compare
NOLOHH_06550 xerC -2.6 -3.4 tyrosine recombinase XerC compare
NOLOHH_00445 -2.6 -3.5 peptidyl-arginine deiminase compare
NOLOHH_20285 yciK -2.5 -1.8 YciK family oxidoreductase compare
NOLOHH_15615 dcd -2.5 -3.1 dCTP deaminase compare
NOLOHH_11495 xerD -2.5 -4.3 site-specific tyrosine recombinase XerD compare
NOLOHH_09695 arcB -2.3 -4.9 aerobic respiration two-component sensor histidine kinase ArcB compare
NOLOHH_15940 -2.3 -4.4 propanediol utilization protein compare
NOLOHH_17140 yeaV -2.2 -2.6 BCCT family transporter YeaV compare
NOLOHH_17565 yniD -2.1 -1.2 Uncharacterized protein YniD compare
NOLOHH_22440 pdeI -2.1 -2.1 putative cyclic di-GMP phosphodiesterase PdeI compare
NOLOHH_00565 -2.0 -1.8 Lambda prophage-derived head-to-tail joining protein W compare
NOLOHH_16290 fliQ -2.0 -1.8 flagellar biosynthesis protein FliQ compare
NOLOHH_17815 fumD -1.9 -2.9 fumarate hydratase FumD compare
NOLOHH_17025 rlmA -1.9 -2.4 23S rRNA (guanine(745)-N(1))-methyltransferase compare
NOLOHH_02845 aceE -1.9 -1.3 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
NOLOHH_20015 ycjW -1.9 -1.2 Uncharacterized HTH-type transcriptional regulator YcjW compare
NOLOHH_11365 rpiA -1.9 -1.8 ribose-5-phosphate isomerase RpiA compare
NOLOHH_08900 aroK -1.9 -1.3 shikimate kinase AroK compare
NOLOHH_14340 ubiX -1.9 -2.5 flavin prenyltransferase UbiX compare
NOLOHH_21000 ldtC -1.9 -2.1 L,D-transpeptidase LdtC compare
NOLOHH_24635 repL -1.9 -1.6 Positive regulator of RepFIC repA1 expression compare
NOLOHH_06540 uvrD -1.9 -10.4 DNA helicase II compare
NOLOHH_18900 ydeN -1.8 -1.5 Uncharacterized sulfatase YdeN compare
NOLOHH_00705 gam -1.8 -1.8 Host-nuclease inhibitor protein gam compare
NOLOHH_19485 paaB -1.8 -1.2 1,2-phenylacetyl-CoA epoxidase subunit B compare
NOLOHH_01270 clpP -1.8 -2.6 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
NOLOHH_22050 serC -1.8 -7.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
NOLOHH_04005 Leu_trna -1.8 -1.1 tRNA-Leu(caa) compare
NOLOHH_04525 miaA -1.7 -1.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
NOLOHH_13310 hscA -1.7 -1.7 Fe-S protein assembly chaperone HscA compare
NOLOHH_14475 nuoE -1.7 -2.4 NADH-quinone oxidoreductase subunit NuoE compare
NOLOHH_06675 wzxE -1.7 -4.7 lipid III flippase WzxE compare
NOLOHH_17055 -1.7 -1.3 Cytoplasmic protein compare
NOLOHH_24495 -1.7 -1.1 lngG compare
NOLOHH_06665 wzyE -1.7 -4.8 ECA oligosaccharide polymerase compare
NOLOHH_04165 treC -1.6 -4.1 alpha,alpha-phosphotrehalase compare
NOLOHH_18920 pqqL -1.6 -2.2 putative zinc protease PqqL compare
NOLOHH_05230 plsB -1.6 -1.6 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
NOLOHH_08775 -1.6 -4.0 NfuA family Fe-S biogenesis protein compare
NOLOHH_12545 recA -1.6 -2.1 recombinase RecA compare
NOLOHH_06920 mnmG -1.6 -3.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
NOLOHH_22960 -1.6 -1.8 Bacteriophage CII protein compare
NOLOHH_02825 acnB -1.6 -2.3 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
NOLOHH_13320 iscX -1.6 -1.1 Fe-S cluster assembly protein IscX compare
NOLOHH_24675 finO -1.5 -5.5 Fertility inhibition protein compare
NOLOHH_21560 yccJ -1.5 -2.0 Uncharacterized protein YccJ compare
NOLOHH_16535 uspC -1.5 -2.6 universal stress protein UspC compare
NOLOHH_16355 yedK -1.5 -1.9 Abasic site processing protein YedK compare
NOLOHH_01255 lon_P403L -1.5 -5.3 Lon protease compare
NOLOHH_13300 iscA -1.4 -1.4 iron-sulfur cluster assembly protein IscA compare
NOLOHH_23040 -1.4 -3.4 hypothetical protein compare
NOLOHH_14910 yejM -1.4 -2.6 LPS biosynthesis-modulating metalloenzyme YejM compare
NOLOHH_06730 trxA -1.4 -1.2 thioredoxin TrxA compare
NOLOHH_22880 -1.4 -6.2 phage holin, lambda family compare
NOLOHH_17225 dgcJ -1.4 -1.7 diguanylate cyclase DgcJ compare
NOLOHH_14460 nuoA -1.4 -2.2 NADH-quinone oxidoreductase subunit NuoA compare
NOLOHH_19515 ydbL -1.4 -2.0 Uncharacterized protein YdbL compare
NOLOHH_18070 rsxB -1.4 -1.4 electron transport complex subunit RsxB compare
NOLOHH_18050 rsxE -1.4 -1.7 electron transport complex subunit RsxE compare
NOLOHH_22820 -1.4 -3.6 Phage-tail-NK domain-containing protein compare
NOLOHH_24795 trbI -1.4 -1.2 type-F conjugative transfer system protein TrbI compare
NOLOHH_13075 lepA -1.4 -3.1 translation elongation factor 4 compare
NOLOHH_03190 apaH -1.4 -4.6 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
NOLOHH_14515 nuoM -1.4 -3.9 NADH-quinone oxidoreductase subunit M compare
NOLOHH_23105 pgl -1.3 -5.2 6-phosphogluconolactonase compare
NOLOHH_20940 potB -1.3 -1.5 spermidine/putrescine ABC transporter permease PotB compare
NOLOHH_19620 gp18 -1.3 -0.9 phage minor tail protein L compare
NOLOHH_23315 sucA -1.3 -1.1 2-oxoglutarate dehydrogenase E1 component compare
NOLOHH_01935 rclC -1.3 -1.2 reactive chlorine species resistance protein RclC compare
NOLOHH_22940 -1.3 -4.8 NinA compare
NOLOHH_00545 -1.3 -2.6 Major capsid protein compare
NOLOHH_24530 -1.3 -1.5 HTH-21 domain-containing protein compare
NOLOHH_11670 escR -1.3 -0.9 EscR/YscR/HrcR family type III secretion system export apparatus protein compare
NOLOHH_23995 fes -1.3 -3.1 enterobactin/ferric enterobactin esterase compare
NOLOHH_23425 ybfC -1.3 -1.3 Uncharacterized protein YbfC compare
NOLOHH_13055 rseA -1.3 -1.9 anti-sigma-E factor RseA compare
NOLOHH_03030 cra -1.3 -4.3 catabolite repressor/activator compare
NOLOHH_23035 -1.3 -2.4 DUF5405 domain-containing protein compare
NOLOHH_07010 pstS -1.3 -6.3 phosphate ABC transporter substrate-binding protein PstS compare
NOLOHH_22850 -1.3 -6.8 portal protein compare
NOLOHH_11425 ubiI -1.3 -1.7 FAD-dependent 2-octaprenylphenol hydroxylase compare
NOLOHH_20745 dsbB -1.3 -2.0 disulfide bond formation protein DsbB compare
NOLOHH_22935 ninB -1.3 -4.8 Protein ninB compare
NOLOHH_14480 nuoF -1.2 -3.7 NADH-quinone oxidoreductase subunit NuoF compare
NOLOHH_24460 -1.2 -1.0 LngX2 compare
NOLOHH_16650 torY -1.2 -2.9 Cytochrome c-type protein TorY compare
NOLOHH_18885 ydeP -1.2 -1.7 acid resistance putative oxidoreductase YdeP compare
NOLOHH_08145 bcsZ -1.2 -6.8 cellulose synthase complex periplasmic endoglucanase BcsZ compare
NOLOHH_08375 pitA -1.2 -3.9 inorganic phosphate transporter PitA compare
NOLOHH_07535 rfaG -1.2 -3.6 Lipopolysaccharide core biosynthesis protein RfaG compare
NOLOHH_07020 pstA -1.2 -1.9 phosphate ABC transporter permease PstA compare
NOLOHH_13430 yfgG -1.2 -1.1 Uncharacterized protein YfgG compare
NOLOHH_17780 sufC -1.2 -2.3 Fe-S cluster assembly ATPase SufC compare
NOLOHH_14520 nuoN -1.2 -3.4 NADH-quinone oxidoreductase subunit NuoN compare
NOLOHH_24745 trbB -1.2 -1.7 type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB compare
NOLOHH_22815 -1.2 -4.6 DUF2824 domain-containing protein compare
NOLOHH_22825 -1.2 -5.3 Packaged DNA stabilization protein gp10 compare
NOLOHH_23030 -1.2 -1.7 siphovirus Gp157 family protein compare
NOLOHH_11415 pepP -1.2 -3.9 Xaa-Pro aminopeptidase compare
NOLOHH_05695 sthA -1.2 -4.3 Si-specific NAD(P)(+) transhydrogenase compare
NOLOHH_22075 pflA -1.2 -1.8 pyruvate formate lyase 1-activating protein compare
NOLOHH_13415 guaA -1.1 -1.7 glutamine-hydrolyzing GMP synthase compare
NOLOHH_22920 -1.1 -1.9 protein ninF compare
NOLOHH_14305 truA -1.1 -3.2 tRNA pseudouridine(38-40) synthase TruA compare
NOLOHH_00360 -1.1 -7.3 relaxase/mobilization nuclease compare
NOLOHH_23480 pgm -1.1 -2.1 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
NOLOHH_11940 recD -1.1 -3.7 exodeoxyribonuclease V subunit alpha compare
NOLOHH_08720 glpD -1.1 -4.4 glycerol-3-phosphate dehydrogenase compare
NOLOHH_20185 rnb -1.1 -1.8 exoribonuclease II compare
NOLOHH_13185 glyA -1.1 -3.1 serine hydroxymethyltransferase compare
NOLOHH_23000 ea10 -1.1 -1.4 Protein ea10 compare
NOLOHH_16380 fliT -1.1 -1.8 flagella biosynthesis regulatory protein FliT compare
NOLOHH_22840 -1.1 -7.4 head protein compare
NOLOHH_17810 pykF -1.1 -1.8 pyruvate kinase PykF compare
NOLOHH_19085 narZ -1.1 -2.4 nitrate reductase Z subunit alpha compare
NOLOHH_15385 -1.1 -3.1 hypothetical protein compare
NOLOHH_15455 gatZ -1.1 -1.6 tagatose-bisphosphate aldolase subunit GatZ compare
NOLOHH_04760 ghoS -1.1 -1.9 type V toxin-antitoxin system endoribonuclease antitoxin GhoS compare
NOLOHH_22845 -1.1 -2.6 phage capsid protein compare
NOLOHH_19710 -1.1 -1.0 transcriptional regulator compare
NOLOHH_20465 rssB -1.1 -1.3 two-component system response regulator RssB compare
NOLOHH_21950 gloC -1.1 -1.7 hydroxyacylglutathione hydrolase GloC compare
NOLOHH_22980 -1.1 -3.5 hypothetical protein compare
NOLOHH_22930 -1.1 -3.7 phage N-6-adenine-methyltransferase compare
NOLOHH_14505 nuoK -1.1 -1.6 NADH-quinone oxidoreductase subunit NuoK compare
NOLOHH_18135 uidC -1.1 -2.1 glucuronide uptake porin UidC compare
NOLOHH_14500 nuoJ -1.1 -2.6 NADH-quinone oxidoreductase subunit J compare
NOLOHH_16855 kdgA -1.1 -1.4 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
NOLOHH_22860 -1.0 -3.0 terminase small subunit compare
NOLOHH_18955 ddpX -1.0 -1.5 D-alanyl-D-alanine dipeptidase compare
NOLOHH_16505 ftnB -1.0 -0.8 non-heme ferritin-like protein compare
NOLOHH_17530 ybcI -1.0 -1.5 metal-dependent hydrolase compare
NOLOHH_00485 -1.0 -5.3 Phage-related protein, tail assembly protein I compare
NOLOHH_09755 lptC -1.0 -2.4 LPS export ABC transporter periplasmic protein LptC compare
NOLOHH_22885 Thr_trna -1.0 -1.5 tRNA-Thr(tgt) compare
NOLOHH_06585 cyaY -1.0 -1.8 iron donor protein CyaY compare
NOLOHH_24755 -1.0 -0.7 toxin ArtA compare
NOLOHH_18810 lsrD -1.0 -1.9 autoinducer 2 ABC transporter permease LsrD compare
NOLOHH_18185 ydgI -1.0 -1.7 Putative arginine/ornithine antiporter compare
NOLOHH_03360 nhaA -1.0 -2.1 Na+/H+ antiporter NhaA compare
NOLOHH_14470 nuoC -1.0 -3.4 NADH-quinone oxidoreductase subunit C/D compare
NOLOHH_14160 Arg_trna -1.0 -1.3 tRNA-Arg(cct) compare
NOLOHH_07125 -1.0 -2.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
NOLOHH_00560 -1.0 -0.9 phage portal protein compare
NOLOHH_22990 -1.0 -4.7 superinfection exclusion protein B compare
NOLOHH_23070 int -1.0 -4.5 Integrase compare
NOLOHH_10020 diaA -1.0 -5.5 DnaA initiator-associating protein DiaA compare
NOLOHH_21315 yceK -1.0 -1.9 YceK/YidQ family lipoprotein compare
NOLOHH_15430 yegV -1.0 -2.3 Uncharacterized sugar kinase YegV compare
NOLOHH_24465 -1.0 -1.9 Longus pilus structural subunit compare
NOLOHH_19435 paaX -1.0 -0.8 phenylacetic acid degradation operon negative regulatory protein PaaX compare
NOLOHH_04150 mgtL -1.0 -0.9 mgtA leader peptide compare
NOLOHH_14495 nuoI -1.0 -1.6 NADH-quinone oxidoreductase subunit NuoI compare
NOLOHH_15515 yegP -1.0 -1.2 UPF0339 protein YegP compare
NOLOHH_19475 paaD -1.0 -2.0 phenylacetate degradation protein PaaD compare
NOLOHH_00615 quuD -1.0 -0.7 antitermination protein QuuD compare
NOLOHH_13640 arsC -1.0 -1.2 ArsC family reductase compare
NOLOHH_05225 dgkA -1.0 -1.7 diacylglycerol kinase compare
NOLOHH_19380 aldA -1.0 -1.9 aldehyde dehydrogenase compare
NOLOHH_19250 ydcS -1.0 -0.8 Bifunctional polyhydroxybutyrate synthase / ABC transporter periplasmic binding protein compare
NOLOHH_03910 fimF -0.9 -2.8 type 1 fimbria minor subunit FimF compare
NOLOHH_23025 -0.9 -4.2 DNA recombinase compare
NOLOHH_17800 ldtE -0.9 -1.2 L,D-transpeptidase LdtE compare
NOLOHH_00605 essD -0.9 -2.0 phage lysis protein EssD compare
NOLOHH_18915 yddB -0.9 -1.0 Uncharacterized protein YddB compare
NOLOHH_22835 -0.9 -1.8 hypothetical protein compare
NOLOHH_11110 rdgB -0.9 -2.9 XTP/dITP diphosphatase compare
NOLOHH_23655 gltL -0.9 -1.9 glutamate/aspartate ABC transporter ATP-binding protein GltL compare
NOLOHH_01960 ykgR -0.9 -0.7 Uncharacterized membrane protein YkgR compare
NOLOHH_01905 -0.9 -1.6 Uncharacterized protein YkgH compare
NOLOHH_18145 manA -0.9 -1.8 mannose-6-phosphate isomerase compare
NOLOHH_07955 yiaG -0.9 -1.7 HTH-type transcriptional regulator compare
NOLOHH_02690 dksA -0.9 -2.1 RNA polymerase-binding protein DksA compare
NOLOHH_24505 -0.9 -1.6 type II secretion protein F compare
NOLOHH_19760 -0.9 -2.4 DUF1367 domain-containing protein compare
NOLOHH_20820 ymgG -0.9 -0.6 UPF0757 protein YmgG compare
NOLOHH_12775 -0.9 -1.5 Response-reg-2 domain-containing protein compare
NOLOHH_02485 rnhB -0.9 -1.5 ribonuclease HII compare
NOLOHH_20255 yciX -0.9 -1.1 YmiA family putative membrane protein compare
NOLOHH_13095 recO -0.9 -3.1 DNA repair protein RecO compare
NOLOHH_15200 osmF -0.9 -3.3 glycine betaine ABC transporter substrate-binding protein OsmF compare
NOLOHH_06915 mioC -0.9 -3.7 FMN-binding protein MioC compare
NOLOHH_20485 Tyr_trna -0.9 -0.8 tRNA-Tyr(gta) compare
NOLOHH_22145 lrp -0.9 -3.5 leucine-responsive transcriptional regulator Lrp compare
NOLOHH_09955 deaD -0.9 -2.0 ATP-dependent RNA helicase DeaD compare
NOLOHH_21675 cbdX -0.9 -1.0 cytochrome bd-II oxidase subunit CbdX compare
NOLOHH_00740 dksA -0.9 -1.2 conjugal transfer protein TraR compare
NOLOHH_09355 aroE -0.9 -3.5 shikimate dehydrogenase compare
NOLOHH_14845 napB -0.9 -1.6 nitrate reductase cytochrome c-type subunit compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECOR27 in phage experiments

For phage Phage across organisms