Experiment set6S260 for Escherichia coli ECRC101
GL_40
Group: toxinMedia: LB + Gliotoxin (40 ug/mL)
Culturing: Ecoli_ECRC101_ML1, 48 well microplate, Aerobic, at 37 (C), shaken=double orbital, continuous, 205cpm
By: Phoebe on 5/17/2025
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Specific Phenotypes
For 21 genes in this experiment
For toxin Gliotoxin in Escherichia coli ECRC101
For toxin Gliotoxin across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Glutathione metabolism
- Nicotinate and nicotinamide metabolism
- Biosynthesis of siderophore group nonribosomal peptides
- Biosynthesis of phenylpropanoids
- Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| di-trans,poly-cis-undecaprenyl phosphate biosynthesis | 2 | 2 | 1 |
| glutathione degradation (DUG pathway) | 2 | 2 | 1 |
| 2,3-dihydroxybenzoate biosynthesis | 3 | 3 | 1 |
| polyisoprenoid biosynthesis (E. coli) | 5 | 5 | 1 |
| NAD salvage pathway V (PNC V cycle) | 5 | 3 | 1 |
| γ-glutamyl cycle | 6 | 5 | 1 |
| NAD salvage pathway I (PNC VI cycle) | 7 | 5 | 1 |
| vibriobactin biosynthesis | 9 | 4 | 1 |
| enterobactin biosynthesis | 11 | 7 | 1 |
| NAD salvage (plants) | 11 | 5 | 1 |
| bacillibactin biosynthesis | 12 | 6 | 1 |
| superpathway of NAD biosynthesis in eukaryotes | 14 | 7 | 1 |
| superpathway of chorismate metabolism | 59 | 54 | 1 |