Experiment set6S192 for Erwinia tracheiphila SCR3

Compare to:

HBM-CucXylem

200 most important genes:

  gene name fitness t score description  
LU632_RS15245 purE -4.3 -4.2 5-(carboxyamino)imidazole ribonucleotide mutase compare
LU632_RS09475 mntR -3.6 -5.4 manganese-binding transcriptional regulator MntR compare
LU632_RS21085 secG -3.4 -4.3 preprotein translocase subunit SecG compare
LU632_RS08335 -3.0 -2.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LU632_RS07865 purF -3.0 -15.6 amidophosphoribosyltransferase compare
LU632_RS05855 serA -2.9 -9.2 phosphoglycerate dehydrogenase compare
LU632_RS01015 purD -2.8 -7.0 phosphoribosylamine--glycine ligase compare
LU632_RS17975 purL -2.7 -14.4 phosphoribosylformylglycinamidine synthase compare
LU632_RS08275 purM -2.7 -6.4 phosphoribosylformylglycinamidine cyclo-ligase compare
LU632_RS12500 pyrF -2.7 -6.8 orotidine-5'-phosphate decarboxylase compare
LU632_RS15250 purK -2.6 -1.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
LU632_RS20950 pyrB -2.6 -8.1 aspartate carbamoyltransferase compare
LU632_RS02755 carA -2.5 -8.6 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
LU632_RS21875 gpsA -2.5 -10.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
LU632_RS26015 -2.4 -7.4 hypothetical protein compare
LU632_RS02750 carB -2.4 -11.8 carbamoyl-phosphate synthase large subunit compare
LU632_RS09955 pyrD -2.3 -9.2 quinone-dependent dihydroorotate dehydrogenase compare
LU632_RS01190 proA -2.3 -8.0 glutamate-5-semialdehyde dehydrogenase compare
LU632_RS01185 proB -2.3 -7.5 glutamate 5-kinase compare
LU632_RS01020 purH -2.3 -2.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LU632_RS18420 -2.2 -1.4 LysE family translocator compare
LU632_RS02880 leuA -2.1 -11.5 2-isopropylmalate synthase compare
LU632_RS02085 cysQ -2.1 -2.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
LU632_RS16480 -2.1 -4.1 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
LU632_RS21365 mdh -2.0 -6.8 malate dehydrogenase compare
LU632_RS10340 pyrC -2.0 -7.7 dihydroorotase compare
LU632_RS02865 leuD -2.0 -7.5 3-isopropylmalate dehydratase small subunit compare
LU632_RS21880 secB -2.0 -3.0 protein-export chaperone SecB compare
LU632_RS18995 proC -1.9 -2.6 pyrroline-5-carboxylate reductase compare
LU632_RS21755 -1.9 -11.3 adenylosuccinate synthase compare
LU632_RS02875 leuB -1.9 -9.4 3-isopropylmalate dehydrogenase compare
LU632_RS24490 -1.9 -2.0 hypothetical protein compare
LU632_RS19820 metN -1.8 -10.3 methionine ABC transporter ATP-binding protein MetN compare
LU632_RS14835 plsX -1.8 -4.6 phosphate acyltransferase PlsX compare
LU632_RS19830 -1.8 -9.2 MetQ/NlpA family lipoprotein compare
LU632_RS22015 pyrE -1.8 -4.2 orotate phosphoribosyltransferase compare
LU632_RS06975 -1.8 -1.2 HNH endonuclease compare
LU632_RS07965 -1.7 -7.6 NADH-quinone oxidoreductase subunit A compare
LU632_RS14860 rne -1.7 -2.0 ribonuclease E compare
LU632_RS06615 ptsI -1.7 -9.4 phosphoenolpyruvate-protein phosphotransferase PtsI compare
LU632_RS19825 -1.7 -10.1 methionine ABC transporter permease MetI compare
LU632_RS02870 leuC -1.7 -9.2 3-isopropylmalate dehydratase large subunit compare
LU632_RS21955 -1.6 -1.1 glycosyltransferase family 4 protein compare
LU632_RS02615 thrB -1.6 -3.7 homoserine kinase compare
LU632_RS08025 nuoN -1.6 -5.9 NADH-quinone oxidoreductase subunit NuoN compare
LU632_RS24405 -1.6 -9.2 branched-chain amino acid transaminase compare
LU632_RS06435 cysC -1.6 -7.3 adenylyl-sulfate kinase compare
LU632_RS07985 nuoF -1.5 -6.5 NADH-quinone oxidoreductase subunit NuoF compare
LU632_RS05535 epd -1.5 -1.8 erythrose-4-phosphate dehydrogenase compare
LU632_RS16090 odhB -1.4 -1.0 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
LU632_RS06625 cysK -1.4 -3.1 cysteine synthase A compare
LU632_RS25495 -1.4 -2.0 type II toxin-antitoxin system MqsA family antitoxin compare
LU632_RS23360 -1.4 -4.0 Sua5/YciO/YrdC/YwlC family protein compare
LU632_RS16105 sdhA -1.4 -7.0 succinate dehydrogenase flavoprotein subunit compare
LU632_RS07995 nuoH -1.4 -4.8 NADH-quinone oxidoreductase subunit NuoH compare
LU632_RS08550 -1.4 -5.0 NAD-dependent malic enzyme compare
LU632_RS00165 -1.4 -2.3 IS6 family transposase compare
LU632_RS25725 -1.3 -1.3 ParA family protein compare
LU632_RS07970 -1.3 -7.1 NADH-quinone oxidoreductase subunit B compare
LU632_RS08830 galE -1.3 -9.7 UDP-glucose 4-epimerase GalE compare
LU632_RS02070 hflC -1.3 -2.1 protease modulator HflC compare
LU632_RS12925 rssB -1.3 -1.5 two-component system response regulator RssB compare
LU632_RS06985 -1.3 -1.4 hypothetical protein compare
LU632_RS06430 cysN -1.3 -6.6 sulfate adenylyltransferase subunit CysN compare
LU632_RS08930 hisH -1.2 -6.2 imidazole glycerol phosphate synthase subunit HisH compare
LU632_RS01085 -1.2 -1.9 class I SAM-dependent methyltransferase compare
LU632_RS07190 -1.2 -3.3 tRNA-Arg compare
LU632_RS23330 -1.2 -2.3 dihydroxyacetone kinase subunit DhaK compare
LU632_RS07775 aroC -1.2 -2.7 chorismate synthase compare
LU632_RS08010 nuoK -1.2 -3.2 NADH-quinone oxidoreductase subunit NuoK compare
LU632_RS05460 -1.2 -1.9 YggS family pyridoxal phosphate-dependent enzyme compare
LU632_RS08260 ppk1 -1.1 -5.4 polyphosphate kinase 1 compare
LU632_RS18455 panE -1.1 -3.7 2-dehydropantoate 2-reductase compare
LU632_RS07975 nuoC -1.1 -7.5 NADH-quinone oxidoreductase subunit C/D compare
LU632_RS07990 nuoG -1.1 -5.8 NADH-quinone oxidoreductase subunit NuoG compare
LU632_RS20120 -1.1 -1.9 ABC transporter permease compare
LU632_RS10295 -1.1 -3.0 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee compare
LU632_RS23005 -1.1 -5.3 DeoR/GlpR family transcriptional regulator compare
LU632_RS16110 sdhD -1.1 -4.7 succinate dehydrogenase membrane anchor subunit compare
LU632_RS17830 -1.1 -1.0 MgtC/SapB family protein compare
LU632_RS19580 fabR -1.1 -1.3 HTH-type transcriptional repressor FabR compare
LU632_RS19815 gmhB -1.1 -1.2 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
LU632_RS16680 -1.1 -1.4 hypothetical protein compare
LU632_RS07005 -1.1 -1.1 helix-turn-helix transcriptional regulator compare
LU632_RS23310 gltP -1.1 -0.9 glutamate/aspartate:proton symporter GltP compare
LU632_RS02050 miaA -1.1 -1.4 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LU632_RS19600 argH -1.1 -6.9 argininosuccinate lyase compare
LU632_RS08015 nuoL -1.1 -6.1 NADH-quinone oxidoreductase subunit L compare
LU632_RS08005 nuoJ -1.0 -4.1 NADH-quinone oxidoreductase subunit J compare
LU632_RS12940 purU -1.0 -6.9 formyltetrahydrofolate deformylase compare
LU632_RS00895 tuf -1.0 -3.7 elongation factor Tu compare
LU632_RS26050 -1.0 -8.0 DUF1073 domain-containing protein compare
LU632_RS00070 -1.0 -2.2 hypothetical protein compare
LU632_RS25645 pilP -1.0 -2.0 type IV pilus biogenesis protein PilP compare
LU632_RS02730 rsmA -1.0 -1.3 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
LU632_RS16120 -1.0 -7.8 citrate synthase compare
LU632_RS26035 -1.0 -5.9 hypothetical protein compare
LU632_RS11560 pspA -1.0 -1.7 phage shock protein PspA compare
LU632_RS12850 cls -1.0 -0.9 cardiolipin synthase compare
LU632_RS25735 -1.0 -1.8 type II toxin-antitoxin system RelE/ParE family toxin compare
LU632_RS16115 sdhC -1.0 -4.3 succinate dehydrogenase cytochrome b556 subunit compare
LU632_RS18100 htpG -1.0 -2.6 molecular chaperone HtpG compare
LU632_RS25155 -0.9 -1.3 phage tail assembly protein compare
LU632_RS24260 trxA -0.9 -2.1 thioredoxin TrxA compare
LU632_RS21750 rnr -0.9 -4.9 ribonuclease R compare
LU632_RS04445 -0.9 -1.2 hypothetical protein compare
LU632_RS20490 -0.9 -5.0 hypothetical protein compare
LU632_RS02555 nadR -0.9 -5.3 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR compare
LU632_RS02610 thrA -0.9 -3.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
LU632_RS08920 hisF -0.9 -3.5 imidazole glycerol phosphate synthase subunit HisF compare
LU632_RS24155 -0.9 -1.2 class I adenylate cyclase compare
LU632_RS05025 -0.9 -0.9 TIGR03749 family integrating conjugative element protein compare
LU632_RS02900 cra -0.9 -5.5 catabolite repressor/activator compare
LU632_RS03615 -0.9 -2.1 phage virion morphogenesis protein compare
LU632_RS06425 cysD -0.9 -4.5 sulfate adenylyltransferase subunit CysD compare
LU632_RS02735 apaG -0.9 -4.7 Co2+/Mg2+ efflux protein ApaG compare
LU632_RS26010 -0.9 -5.1 head-tail adaptor compare
LU632_RS09795 aroA -0.9 -3.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
LU632_RS14745 -0.9 -1.0 IS5 family transposase compare
LU632_RS07980 nuoE -0.8 -1.2 NADH-quinone oxidoreductase subunit NuoE compare
LU632_RS19100 -0.8 -1.0 hypothetical protein compare
LU632_RS10785 tagH -0.8 -3.4 type VI secretion system-associated FHA domain protein TagH compare
LU632_RS08915 hisIE -0.8 -3.2 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
LU632_RS13620 -0.8 -1.3 phosphatase compare
LU632_RS16560 -0.8 -1.2 hypothetical protein compare
LU632_RS12200 -0.8 -2.8 excisionase family protein compare
LU632_RS11040 -0.8 -6.1 FAD-binding oxidoreductase compare
LU632_RS15685 luxS -0.8 -3.9 S-ribosylhomocysteine lyase compare
LU632_RS06405 cysI -0.8 -4.3 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
LU632_RS26030 -0.8 -5.1 DUF2184 domain-containing protein compare
LU632_RS09915 ompC -0.8 -5.2 porin OmpC compare
LU632_RS20090 pcnB -0.8 -2.7 polynucleotide adenylyltransferase PcnB compare
LU632_RS05120 -0.8 -1.0 TIGR03758 family integrating conjugative element protein compare
LU632_RS06400 cysJ -0.8 -3.9 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
LU632_RS11245 slyB -0.8 -1.5 outer membrane lipoprotein SlyB compare
LU632_RS26055 -0.8 -3.9 DUF2442 domain-containing protein compare
LU632_RS19610 argB -0.8 -2.6 acetylglutamate kinase compare
LU632_RS20675 glnE -0.8 -5.6 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
LU632_RS21260 kdsC -0.8 -2.2 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
LU632_RS13520 cheY -0.8 -1.4 chemotaxis response regulator CheY compare
LU632_RS02635 mog -0.8 -2.0 molybdopterin adenylyltransferase compare
LU632_RS22710 -0.8 -2.6 transcriptional regulator compare
LU632_RS07045 -0.8 -1.1 hypothetical protein compare
LU632_RS07950 yfbR -0.7 -2.9 5'-deoxynucleotidase compare
LU632_RS06420 cysG -0.7 -3.8 siroheme synthase CysG compare
LU632_RS08000 nuoI -0.7 -2.1 NADH-quinone oxidoreductase subunit NuoI compare
LU632_RS09635 -0.7 -1.7 YbjN domain-containing protein compare
LU632_RS23215 -0.7 -0.8 VirK/YbjX family protein compare
LU632_RS10510 rcsA -0.7 -1.0 transcriptional regulator RcsA compare
LU632_RS04705 -0.7 -1.4 helix-turn-helix domain-containing protein compare
LU632_RS08020 nuoM -0.7 -3.4 NADH-quinone oxidoreductase subunit M compare
LU632_RS08925 hisA -0.7 -1.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
LU632_RS06045 galR -0.7 -3.4 HTH-type transcriptional regulator GalR compare
LU632_RS00330 -0.7 -4.7 dicarboxylate/amino acid:cation symporter compare
LU632_RS10790 tagF -0.7 -1.9 type VI secretion system-associated protein TagF compare
LU632_RS20505 -0.7 -1.4 IS256 family transposase compare
LU632_RS18875 -0.7 -0.8 IS256 family transposase compare
LU632_RS20750 -0.7 -1.4 hypothetical protein compare
LU632_RS01740 -0.7 -1.5 hypothetical protein compare
LU632_RS20900 argF -0.7 -4.4 ornithine carbamoyltransferase compare
LU632_RS09730 trxB -0.7 -1.3 thioredoxin-disulfide reductase compare
LU632_RS08945 hisD -0.7 -3.6 histidinol dehydrogenase compare
LU632_RS07255 -0.7 -2.1 hypothetical protein compare
LU632_RS22960 feoA -0.7 -0.7 ferrous iron transporter A compare
LU632_RS21225 mlaB -0.7 -2.2 lipid asymmetry maintenance protein MlaB compare
LU632_RS09740 lrp -0.7 -2.7 leucine-responsive transcriptional regulator Lrp compare
LU632_RS02150 cybC -0.7 -1.3 cytochrome b562 compare
LU632_RS13460 cmoB -0.7 -2.6 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
LU632_RS08885 -0.7 -2.1 ABC transporter ATP-binding protein compare
LU632_RS25015 -0.7 -1.8 hypothetical protein compare
LU632_RS07875 -0.7 -2.0 ATP-binding cassette domain-containing protein compare
LU632_RS19605 -0.7 -3.7 argininosuccinate synthase compare
LU632_RS17275 fghA -0.7 -4.3 S-formylglutathione hydrolase compare
LU632_RS06410 -0.7 -0.9 phosphoadenylyl-sulfate reductase compare
LU632_RS08880 -0.7 -1.6 ABC transporter permease compare
LU632_RS03905 -0.7 -1.9 DUF1795 domain-containing protein compare
LU632_RS19615 argC -0.7 -3.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
LU632_RS16735 -0.7 -1.7 IS110 family transposase compare
LU632_RS00630 adhP -0.7 -3.3 alcohol dehydrogenase AdhP compare
LU632_RS23415 -0.7 -1.5 incFII family plasmid replication initiator RepA compare
LU632_RS15740 pncC -0.7 -2.4 nicotinamide-nucleotide amidase compare
LU632_RS06965 -0.7 -2.5 ERF family protein compare
LU632_RS10045 -0.7 -2.8 YccF domain-containing protein compare
LU632_RS13610 -0.7 -2.4 glutamine amidotransferase compare
LU632_RS05445 hemW -0.7 -3.9 radical SAM family heme chaperone HemW compare
LU632_RS24385 ilvC -0.6 -3.3 ketol-acid reductoisomerase compare
LU632_RS12725 -0.6 -2.1 YciK family oxidoreductase compare
LU632_RS26040 -0.6 -3.7 DUF2213 domain-containing protein compare
LU632_RS08935 hisB -0.6 -3.9 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
LU632_RS15635 -0.6 -2.5 regulatory phage cox family protein compare
LU632_RS11420 -0.6 -1.0 FNR family transcription factor compare
LU632_RS02515 deoC -0.6 -2.3 deoxyribose-phosphate aldolase compare
LU632_RS24840 kup -0.6 -3.6 low affinity potassium transporter Kup compare
LU632_RS15805 -0.6 -1.3 family 10 glycosylhydrolase compare
LU632_RS13635 -0.6 -1.6 hypothetical protein compare
LU632_RS06340 barA -0.6 -1.6 two-component sensor histidine kinase BarA compare
LU632_RS19715 fpr -0.6 -3.7 ferredoxin--NADP(+) reductase compare
LU632_RS22445 aroE -0.6 -0.8 shikimate dehydrogenase compare
LU632_RS21245 mlaF -0.6 -3.4 phospholipid ABC transporter ATP-binding protein MlaF compare
LU632_RS19620 argE -0.6 -2.3 acetylornithine deacetylase compare


Specific Phenotypes

None in this experiment

For Erwinia tracheiphila SCR3 in hbm-cucxylem experiments