Experiment set6S191 for Erwinia tracheiphila SCR3

Compare to:

HBM-CucXylem

200 most important genes:

  gene name fitness t score description  
LU632_RS08335 -4.0 -2.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LU632_RS15245 purE -3.8 -5.0 5-(carboxyamino)imidazole ribonucleotide mutase compare
LU632_RS07865 purF -2.8 -17.5 amidophosphoribosyltransferase compare
LU632_RS01020 purH -2.8 -4.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LU632_RS15250 purK -2.8 -4.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
LU632_RS17975 purL -2.7 -16.1 phosphoribosylformylglycinamidine synthase compare
LU632_RS19295 -2.6 -1.7 DUF2500 domain-containing protein compare
LU632_RS26015 -2.6 -9.7 hypothetical protein compare
LU632_RS07995 nuoH -2.6 -5.6 NADH-quinone oxidoreductase subunit NuoH compare
LU632_RS16090 odhB -2.5 -1.7 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
LU632_RS18995 proC -2.5 -3.3 pyrroline-5-carboxylate reductase compare
LU632_RS08275 purM -2.4 -8.1 phosphoribosylformylglycinamidine cyclo-ligase compare
LU632_RS08010 nuoK -2.4 -5.7 NADH-quinone oxidoreductase subunit NuoK compare
LU632_RS09475 mntR -2.4 -6.5 manganese-binding transcriptional regulator MntR compare
LU632_RS01015 purD -2.4 -6.9 phosphoribosylamine--glycine ligase compare
LU632_RS07975 nuoC -2.3 -13.1 NADH-quinone oxidoreductase subunit C/D compare
LU632_RS07985 nuoF -2.3 -9.3 NADH-quinone oxidoreductase subunit NuoF compare
LU632_RS08025 nuoN -2.3 -7.6 NADH-quinone oxidoreductase subunit NuoN compare
LU632_RS14835 plsX -2.2 -4.7 phosphate acyltransferase PlsX compare
LU632_RS07965 -2.2 -9.4 NADH-quinone oxidoreductase subunit A compare
LU632_RS17925 glnB -2.2 -1.4 nitrogen regulatory protein P-II compare
LU632_RS08015 nuoL -2.2 -11.4 NADH-quinone oxidoreductase subunit L compare
LU632_RS12905 hns -2.2 -1.4 DNA-binding transcriptional regulator H-NS compare
LU632_RS21875 gpsA -2.1 -11.5 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
LU632_RS08830 galE -2.1 -14.6 UDP-glucose 4-epimerase GalE compare
LU632_RS07775 aroC -2.1 -4.6 chorismate synthase compare
LU632_RS08005 nuoJ -2.1 -6.8 NADH-quinone oxidoreductase subunit J compare
LU632_RS21880 secB -2.0 -4.2 protein-export chaperone SecB compare
LU632_RS09955 pyrD -2.0 -8.9 quinone-dependent dihydroorotate dehydrogenase compare
LU632_RS02070 hflC -2.0 -3.1 protease modulator HflC compare
LU632_RS01190 proA -1.9 -8.6 glutamate-5-semialdehyde dehydrogenase compare
LU632_RS08020 nuoM -1.9 -7.6 NADH-quinone oxidoreductase subunit M compare
LU632_RS21365 mdh -1.9 -7.6 malate dehydrogenase compare
LU632_RS07970 -1.8 -9.6 NADH-quinone oxidoreductase subunit B compare
LU632_RS08000 nuoI -1.8 -4.9 NADH-quinone oxidoreductase subunit NuoI compare
LU632_RS02750 carB -1.8 -11.9 carbamoyl-phosphate synthase large subunit compare
LU632_RS10340 pyrC -1.8 -8.3 dihydroorotase compare
LU632_RS12925 rssB -1.7 -1.6 two-component system response regulator RssB compare
LU632_RS06625 cysK -1.7 -4.6 cysteine synthase A compare
LU632_RS07990 nuoG -1.7 -8.1 NADH-quinone oxidoreductase subunit NuoG compare
LU632_RS17020 -1.7 -1.5 type II toxin-antitoxin system RatA family toxin compare
LU632_RS05460 -1.7 -3.5 YggS family pyridoxal phosphate-dependent enzyme compare
LU632_RS16105 sdhA -1.6 -7.3 succinate dehydrogenase flavoprotein subunit compare
LU632_RS16110 sdhD -1.6 -6.3 succinate dehydrogenase membrane anchor subunit compare
LU632_RS02545 serB -1.6 -1.5 phosphoserine phosphatase compare
LU632_RS06615 ptsI -1.6 -10.1 phosphoenolpyruvate-protein phosphotransferase PtsI compare
LU632_RS09745 -1.6 -2.0 DNA translocase FtsK 4TM domain-containing protein compare
LU632_RS13455 cmoA -1.6 -2.7 carboxy-S-adenosyl-L-methionine synthase CmoA compare
LU632_RS22865 aroB -1.6 -1.8 3-dehydroquinate synthase compare
LU632_RS05855 serA -1.6 -7.6 phosphoglycerate dehydrogenase compare
LU632_RS09795 aroA -1.6 -7.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
LU632_RS08060 -1.6 -2.0 phage protease compare
LU632_RS13905 -1.5 -2.7 DUF6388 family protein compare
LU632_RS20950 pyrB -1.5 -7.6 aspartate carbamoyltransferase compare
LU632_RS12500 pyrF -1.5 -6.5 orotidine-5'-phosphate decarboxylase compare
LU632_RS14860 rne -1.5 -1.2 ribonuclease E compare
LU632_RS09670 artM -1.4 -4.1 arginine ABC transporter permease ArtM compare
LU632_RS01185 proB -1.4 -6.6 glutamate 5-kinase compare
LU632_RS14050 -1.4 -1.2 IS256 family transposase compare
LU632_RS19830 -1.4 -7.6 MetQ/NlpA family lipoprotein compare
LU632_RS06610 crr -1.4 -2.5 PTS glucose transporter subunit IIA compare
LU632_RS16115 sdhC -1.4 -4.3 succinate dehydrogenase cytochrome b556 subunit compare
LU632_RS05535 epd -1.4 -3.8 erythrose-4-phosphate dehydrogenase compare
LU632_RS15385 rnc -1.4 -2.3 ribonuclease III compare
LU632_RS19825 -1.4 -7.9 methionine ABC transporter permease MetI compare
LU632_RS15445 tyrA -1.4 -7.7 bifunctional chorismate mutase/prephenate dehydrogenase compare
LU632_RS19580 fabR -1.3 -2.1 HTH-type transcriptional repressor FabR compare
LU632_RS07950 yfbR -1.3 -3.4 5'-deoxynucleotidase compare
LU632_RS02755 carA -1.3 -7.3 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
LU632_RS00695 -1.3 -1.2 fimbria/pilus periplasmic chaperone compare
LU632_RS02865 leuD -1.3 -6.7 3-isopropylmalate dehydratase small subunit compare
LU632_RS08260 ppk1 -1.3 -6.6 polyphosphate kinase 1 compare
LU632_RS24890 pstA -1.3 -1.7 phosphate ABC transporter permease PstA compare
LU632_RS25725 -1.3 -1.9 ParA family protein compare
LU632_RS06335 -1.3 -6.3 glycerate kinase compare
LU632_RS04305 -1.3 -1.5 DNA primase compare
LU632_RS05515 speB -1.3 -1.4 agmatinase compare
LU632_RS16100 -1.3 -2.4 succinate dehydrogenase iron-sulfur subunit compare
LU632_RS00895 tuf -1.3 -4.9 elongation factor Tu compare
LU632_RS02590 gpmB -1.3 -4.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB compare
LU632_RS10785 tagH -1.3 -5.4 type VI secretion system-associated FHA domain protein TagH compare
LU632_RS17830 -1.3 -1.2 MgtC/SapB family protein compare
LU632_RS01085 -1.3 -2.6 class I SAM-dependent methyltransferase compare
LU632_RS19820 metN -1.2 -8.6 methionine ABC transporter ATP-binding protein MetN compare
LU632_RS07190 -1.2 -3.8 tRNA-Arg compare
LU632_RS02900 cra -1.2 -7.7 catabolite repressor/activator compare
LU632_RS21750 rnr -1.2 -6.9 ribonuclease R compare
LU632_RS16095 sucA -1.2 -0.8 2-oxoglutarate dehydrogenase E1 component compare
LU632_RS21755 -1.2 -8.5 adenylosuccinate synthase compare
LU632_RS09085 pgl -1.2 -2.1 6-phosphogluconolactonase compare
LU632_RS16120 -1.2 -9.3 citrate synthase compare
LU632_RS10790 tagF -1.2 -2.9 type VI secretion system-associated protein TagF compare
LU632_RS10270 -1.2 -1.3 glucan biosynthesis protein G compare
LU632_RS09915 ompC -1.2 -7.8 porin OmpC compare
LU632_RS02875 leuB -1.2 -7.6 3-isopropylmalate dehydrogenase compare
LU632_RS23310 gltP -1.2 -1.2 glutamate/aspartate:proton symporter GltP compare
LU632_RS08880 -1.2 -2.7 ABC transporter permease compare
LU632_RS08885 -1.2 -4.1 ABC transporter ATP-binding protein compare
LU632_RS09680 artJ -1.1 -3.5 arginine ABC transporter substrate-binding protein compare
LU632_RS16415 tatE -1.1 -1.1 twin-arginine translocase subunit TatE compare
LU632_RS02825 thiQ -1.1 -5.5 thiamine ABC transporter ATP-binding protein ThiQ compare
LU632_RS00330 -1.1 -6.0 dicarboxylate/amino acid:cation symporter compare
LU632_RS25350 -1.1 -1.2 hypothetical protein compare
LU632_RS11245 slyB -1.1 -2.5 outer membrane lipoprotein SlyB compare
LU632_RS20490 -1.1 -6.7 hypothetical protein compare
LU632_RS16480 -1.1 -3.7 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
LU632_RS21085 secG -1.1 -3.0 preprotein translocase subunit SecG compare
LU632_RS22960 feoA -1.1 -1.1 ferrous iron transporter A compare
LU632_RS26030 -1.1 -7.4 DUF2184 domain-containing protein compare
LU632_RS24170 hemX -1.1 -4.5 uroporphyrinogen-III C-methyltransferase compare
LU632_RS07980 nuoE -1.0 -1.5 NADH-quinone oxidoreductase subunit NuoE compare
LU632_RS20675 glnE -1.0 -7.9 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
LU632_RS02050 miaA -1.0 -1.8 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LU632_RS24260 trxA -1.0 -3.8 thioredoxin TrxA compare
LU632_RS23005 -1.0 -4.1 DeoR/GlpR family transcriptional regulator compare
LU632_RS18100 htpG -1.0 -3.6 molecular chaperone HtpG compare
LU632_RS00535 -1.0 -1.9 acyl carrier protein compare
LU632_RS17325 fruB -1.0 -6.1 fused PTS fructose transporter subunit IIA/HPr protein compare
LU632_RS02065 hflK -1.0 -2.1 FtsH protease activity modulator HflK compare
LU632_RS14745 -1.0 -1.1 IS5 family transposase compare
LU632_RS08550 -1.0 -4.4 NAD-dependent malic enzyme compare
LU632_RS05065 -1.0 -2.4 helix-turn-helix domain-containing protein compare
LU632_RS26050 -1.0 -8.1 DUF1073 domain-containing protein compare
LU632_RS13165 -1.0 -1.8 hypothetical protein compare
LU632_RS12725 -1.0 -3.3 YciK family oxidoreductase compare
LU632_RS02835 thiB -0.9 -6.4 thiamine ABC transporter substrate binding subunit compare
LU632_RS24155 -0.9 -1.6 class I adenylate cyclase compare
LU632_RS11040 -0.9 -7.4 FAD-binding oxidoreductase compare
LU632_RS22015 pyrE -0.9 -3.3 orotate phosphoribosyltransferase compare
LU632_RS12910 -0.9 -1.2 NAD-dependent epimerase compare
LU632_RS02880 leuA -0.9 -6.6 2-isopropylmalate synthase compare
LU632_RS10275 mdoH -0.9 -1.9 glucans biosynthesis glucosyltransferase MdoH compare
LU632_RS12850 cls -0.9 -1.4 cardiolipin synthase compare
LU632_RS26035 -0.9 -5.6 hypothetical protein compare
LU632_RS06340 barA -0.9 -2.5 two-component sensor histidine kinase BarA compare
LU632_RS05020 -0.9 -2.2 TIGR03746 family integrating conjugative element protein compare
LU632_RS07210 -0.9 -2.3 transcriptional regulator compare
LU632_RS16475 arnT -0.9 -6.2 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase compare
LU632_RS13055 -0.9 -1.3 multidrug effflux MFS transporter compare
LU632_RS21710 rplI -0.9 -1.4 50S ribosomal protein L9 compare
LU632_RS03890 -0.9 -0.8 hypothetical protein compare
LU632_RS09730 trxB -0.9 -1.8 thioredoxin-disulfide reductase compare
LU632_RS09685 artP -0.9 -2.1 arginine ABC transporter ATP-binding protein ArtP compare
LU632_RS02870 leuC -0.8 -4.7 3-isopropylmalate dehydratase large subunit compare
LU632_RS06635 zipA -0.8 -1.7 cell division protein ZipA compare
LU632_RS23215 -0.8 -0.9 VirK/YbjX family protein compare
LU632_RS26040 -0.8 -5.2 DUF2213 domain-containing protein compare
LU632_RS02735 apaG -0.8 -4.6 Co2+/Mg2+ efflux protein ApaG compare
LU632_RS15395 lepA -0.8 -2.0 translation elongation factor 4 compare
LU632_RS19980 glnD -0.8 -1.5 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
LU632_RS24405 -0.8 -5.5 branched-chain amino acid transaminase compare
LU632_RS13460 cmoB -0.8 -3.3 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
LU632_RS01510 -0.8 -1.3 hypothetical protein compare
LU632_RS07875 -0.8 -1.4 ATP-binding cassette domain-containing protein compare
LU632_RS17320 fruK -0.8 -2.6 1-phosphofructokinase compare
LU632_RS25555 -0.8 -1.6 IS6 family transposase compare
LU632_RS06905 -0.8 -1.1 excisionase compare
LU632_RS17275 fghA -0.8 -5.6 S-formylglutathione hydrolase compare
LU632_RS00070 -0.8 -2.1 hypothetical protein compare
LU632_RS14845 yceD -0.8 -0.8 23S rRNA accumulation protein YceD compare
LU632_RS13085 dsbB -0.8 -1.5 disulfide bond formation protein DsbB compare
LU632_RS10745 sirB1 -0.8 -1.6 invasion regulator SirB1 compare
LU632_RS12730 rluB -0.8 -4.2 23S rRNA pseudouridine(2605) synthase RluB compare
LU632_RS09455 glnH -0.8 -4.1 glutamine ABC transporter substrate-binding protein GlnH compare
LU632_RS10510 rcsA -0.8 -1.1 transcriptional regulator RcsA compare
LU632_RS26010 -0.8 -4.9 head-tail adaptor compare
LU632_RS19610 argB -0.8 -2.8 acetylglutamate kinase compare
LU632_RS06470 -0.8 -1.4 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
LU632_RS01430 -0.8 -1.0 hypothetical protein compare
LU632_RS03495 -0.8 -2.3 phage regulatory CII family protein compare
LU632_RS09450 glnP -0.7 -5.1 glutamine ABC transporter permease GlnP compare
LU632_RS18350 tig -0.7 -2.6 trigger factor compare
LU632_RS04650 -0.7 -2.5 hypothetical protein compare
LU632_RS04450 -0.7 -2.0 SprT-like domain-containing protein compare
LU632_RS18970 -0.7 -1.0 YaiA family protein compare
LU632_RS02730 rsmA -0.7 -1.5 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
LU632_RS15480 -0.7 -2.0 hypothetical protein compare
LU632_RS18890 brnQ -0.7 -5.1 branched-chain amino acid transport system II carrier protein compare
LU632_RS02830 thiP -0.7 -4.3 thiamine/thiamine pyrophosphate ABC transporter permease ThiP compare
LU632_RS20090 pcnB -0.7 -2.7 polynucleotide adenylyltransferase PcnB compare
LU632_RS02525 deoB -0.7 -4.8 phosphopentomutase compare
LU632_RS22365 pgi -0.7 -4.3 glucose-6-phosphate isomerase compare
LU632_RS06355 -0.7 -1.6 hypothetical protein compare
LU632_RS12800 -0.7 -2.5 envelope biogenesis factor ElyC compare
LU632_RS18420 -0.7 -1.0 LysE family translocator compare
LU632_RS24895 pstB -0.7 -1.4 phosphate ABC transporter ATP-binding protein PstB compare
LU632_RS19750 -0.7 -1.7 PhzF family phenazine biosynthesis protein compare
LU632_RS16485 arnA -0.7 -4.8 bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA compare
LU632_RS18440 hutX -0.7 -1.8 heme utilization cystosolic carrier protein HutX compare
LU632_RS02555 nadR -0.7 -4.5 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR compare
LU632_RS15640 -0.7 -1.3 helix-turn-helix domain-containing protein compare
LU632_RS06825 -0.7 -1.2 hypothetical protein compare
LU632_RS18455 panE -0.7 -2.8 2-dehydropantoate 2-reductase compare
LU632_RS06435 cysC -0.7 -3.8 adenylyl-sulfate kinase compare
LU632_RS12665 -0.7 -2.3 YdbL family protein compare
LU632_RS04710 -0.7 -0.8 IS110 family transposase compare
LU632_RS18965 -0.7 -4.5 AroM family protein compare
LU632_RS17220 -0.7 -0.9 type II toxin-antitoxin system HicA family toxin compare
LU632_RS12940 purU -0.7 -4.6 formyltetrahydrofolate deformylase compare
LU632_RS07955 -0.7 -4.0 pyridoxal phosphate-dependent aminotransferase compare


Specific Phenotypes

None in this experiment

For Erwinia tracheiphila SCR3 in hbm-cucxylem experiments