Experiment set6S185 for Erwinia tracheiphila SCR3

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HBM-Glucose

200 most important genes:

  gene name fitness t score description  
LU632_RS15245 purE -7.3 -5.0 5-(carboxyamino)imidazole ribonucleotide mutase compare
LU632_RS02880 leuA -6.3 -9.6 2-isopropylmalate synthase compare
LU632_RS21755 -6.2 -11.9 adenylosuccinate synthase compare
LU632_RS05855 serA -6.1 -7.2 phosphoglycerate dehydrogenase compare
LU632_RS07865 purF -6.0 -16.4 amidophosphoribosyltransferase compare
LU632_RS22410 metA -6.0 -11.4 homoserine O-succinyltransferase compare
LU632_RS21315 gltB -5.9 -17.8 glutamate synthase large subunit compare
LU632_RS09955 pyrD -5.9 -9.0 quinone-dependent dihydroorotate dehydrogenase compare
LU632_RS19640 metB -5.7 -12.1 cystathionine gamma-synthase compare
LU632_RS02865 leuD -5.6 -9.3 3-isopropylmalate dehydratase small subunit compare
LU632_RS20950 pyrB -5.6 -5.5 aspartate carbamoyltransferase compare
LU632_RS21320 -5.6 -9.3 glutamate synthase small subunit compare
LU632_RS02870 leuC -5.5 -10.0 3-isopropylmalate dehydratase large subunit compare
LU632_RS02875 leuB -5.5 -11.2 3-isopropylmalate dehydrogenase compare
LU632_RS09475 mntR -5.4 -6.3 manganese-binding transcriptional regulator MntR compare
LU632_RS24400 ilvD -5.4 -11.5 dihydroxy-acid dehydratase compare
LU632_RS09740 lrp -5.3 -6.2 leucine-responsive transcriptional regulator Lrp compare
LU632_RS17975 purL -5.3 -15.5 phosphoribosylformylglycinamidine synthase compare
LU632_RS08275 purM -5.3 -6.2 phosphoribosylformylglycinamidine cyclo-ligase compare
LU632_RS02750 carB -5.1 -10.9 carbamoyl-phosphate synthase large subunit compare
LU632_RS12500 pyrF -5.1 -6.9 orotidine-5'-phosphate decarboxylase compare
LU632_RS10340 pyrC -5.1 -6.9 dihydroorotase compare
LU632_RS24035 metR -5.1 -10.7 HTH-type transcriptional regulator MetR compare
LU632_RS20545 metC -5.0 -11.3 cystathionine beta-lyase compare
LU632_RS15445 tyrA -4.9 -14.1 bifunctional chorismate mutase/prephenate dehydrogenase compare
LU632_RS06435 cysC -4.9 -10.9 adenylyl-sulfate kinase compare
LU632_RS06045 galR -4.9 -9.8 HTH-type transcriptional regulator GalR compare
LU632_RS08930 hisH -4.9 -10.3 imidazole glycerol phosphate synthase subunit HisH compare
LU632_RS01015 purD -4.8 -8.6 phosphoribosylamine--glycine ligase compare
LU632_RS24405 -4.7 -14.4 branched-chain amino acid transaminase compare
LU632_RS19625 ppc -4.7 -17.5 phosphoenolpyruvate carboxylase compare
LU632_RS24385 ilvC -4.7 -9.9 ketol-acid reductoisomerase compare
LU632_RS02755 carA -4.7 -12.3 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
LU632_RS06430 cysN -4.6 -11.1 sulfate adenylyltransferase subunit CysN compare
LU632_RS08335 -4.6 -3.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LU632_RS06040 lysA -4.5 -6.9 diaminopimelate decarboxylase compare
LU632_RS22015 pyrE -4.4 -4.2 orotate phosphoribosyltransferase compare
LU632_RS22365 pgi -4.3 -13.6 glucose-6-phosphate isomerase compare
LU632_RS01020 purH -4.3 -3.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LU632_RS06420 cysG -4.3 -14.1 siroheme synthase CysG compare
LU632_RS24395 ilvA -4.2 -14.6 threonine ammonia-lyase, biosynthetic compare
LU632_RS16480 -4.2 -5.7 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
LU632_RS06425 cysD -4.1 -10.9 sulfate adenylyltransferase subunit CysD compare
LU632_RS02615 thrB -4.1 -4.9 homoserine kinase compare
LU632_RS26015 -4.1 -8.2 hypothetical protein compare
LU632_RS07775 aroC -4.1 -4.0 chorismate synthase compare
LU632_RS06410 -3.9 -2.7 phosphoadenylyl-sulfate reductase compare
LU632_RS01185 proB -3.9 -11.3 glutamate 5-kinase compare
LU632_RS15250 purK -3.9 -4.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
LU632_RS06405 cysI -3.8 -13.4 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
LU632_RS19620 argE -3.8 -8.0 acetylornithine deacetylase compare
LU632_RS06625 cysK -3.8 -4.5 cysteine synthase A compare
LU632_RS06680 cysA -3.8 -12.8 sulfate/thiosulfate ABC transporter ATP-binding protein CysA compare
LU632_RS19615 argC -3.8 -11.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
LU632_RS06690 cysT -3.7 -7.0 sulfate/thiosulfate ABC transporter permease CysT compare
LU632_RS21875 gpsA -3.6 -15.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
LU632_RS21880 secB -3.6 -4.3 protein-export chaperone SecB compare
LU632_RS06685 cysW -3.6 -14.9 sulfate/thiosulfate ABC transporter permease CysW compare
LU632_RS19610 argB -3.6 -7.1 acetylglutamate kinase compare
LU632_RS08920 hisF -3.5 -10.3 imidazole glycerol phosphate synthase subunit HisF compare
LU632_RS06400 cysJ -3.5 -11.9 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
LU632_RS19600 argH -3.5 -16.6 argininosuccinate lyase compare
LU632_RS02610 thrA -3.5 -9.0 bifunctional aspartate kinase/homoserine dehydrogenase I compare
LU632_RS07955 -3.5 -13.4 pyridoxal phosphate-dependent aminotransferase compare
LU632_RS18995 proC -3.5 -3.3 pyrroline-5-carboxylate reductase compare
LU632_RS01190 proA -3.4 -12.1 glutamate-5-semialdehyde dehydrogenase compare
LU632_RS09795 aroA -3.4 -9.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
LU632_RS16120 -3.3 -21.0 citrate synthase compare
LU632_RS08890 gndA -3.3 -3.8 NADP-dependent phosphogluconate dehydrogenase compare
LU632_RS03330 -3.3 -13.8 LacI family DNA-binding transcriptional regulator compare
LU632_RS20900 argF -3.2 -13.6 ornithine carbamoyltransferase compare
LU632_RS08935 hisB -3.2 -12.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
LU632_RS25495 -3.1 -4.1 type II toxin-antitoxin system MqsA family antitoxin compare
LU632_RS19605 -3.0 -10.8 argininosuccinate synthase compare
LU632_RS21085 secG -3.0 -5.7 preprotein translocase subunit SecG compare
LU632_RS16090 odhB -3.0 -2.0 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
LU632_RS26010 -3.0 -9.8 head-tail adaptor compare
LU632_RS06210 argA -2.9 -12.0 amino-acid N-acetyltransferase compare
LU632_RS26005 -2.9 -10.4 hypothetical protein compare
LU632_RS12925 rssB -2.9 -2.7 two-component system response regulator RssB compare
LU632_RS08925 hisA -2.9 -4.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
LU632_RS22445 aroE -2.8 -2.7 shikimate dehydrogenase compare
LU632_RS22810 -2.8 -13.8 aspartate aminotransferase family protein compare
LU632_RS25725 -2.8 -3.2 ParA family protein compare
LU632_RS08915 hisIE -2.8 -9.1 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
LU632_RS08945 hisD -2.8 -10.7 histidinol dehydrogenase compare
LU632_RS06635 zipA -2.7 -4.5 cell division protein ZipA compare
LU632_RS06695 cysP -2.7 -12.4 thiosulfate ABC transporter substrate-binding protein CysP compare
LU632_RS16105 sdhA -2.6 -11.1 succinate dehydrogenase flavoprotein subunit compare
LU632_RS08940 hisC -2.6 -15.1 histidinol-phosphate transaminase compare
LU632_RS06615 ptsI -2.6 -15.5 phosphoenolpyruvate-protein phosphotransferase PtsI compare
LU632_RS08260 ppk1 -2.6 -8.6 polyphosphate kinase 1 compare
LU632_RS21350 -2.5 -5.9 DUF1043 family protein compare
LU632_RS12940 purU -2.5 -15.7 formyltetrahydrofolate deformylase compare
LU632_RS16115 sdhC -2.5 -8.6 succinate dehydrogenase cytochrome b556 subunit compare
LU632_RS02050 miaA -2.5 -2.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LU632_RS11425 uspE -2.4 -6.2 universal stress protein UspE compare
LU632_RS05460 -2.4 -4.2 YggS family pyridoxal phosphate-dependent enzyme compare
LU632_RS19815 gmhB -2.4 -2.7 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
LU632_RS16100 -2.4 -5.4 succinate dehydrogenase iron-sulfur subunit compare
LU632_RS09745 -2.3 -2.5 DNA translocase FtsK 4TM domain-containing protein compare
LU632_RS22135 glnG -2.3 -9.7 nitrogen regulation protein NR(I) compare
LU632_RS02545 serB -2.3 -1.6 phosphoserine phosphatase compare
LU632_RS22140 glnL -2.3 -13.5 nitrogen regulation protein NR(II) compare
LU632_RS16110 sdhD -2.3 -9.4 succinate dehydrogenase membrane anchor subunit compare
LU632_RS19580 fabR -2.3 -3.0 HTH-type transcriptional repressor FabR compare
LU632_RS00575 mntP -2.3 -6.5 manganese efflux pump MntP compare
LU632_RS15690 gshA -2.3 -2.9 glutamate--cysteine ligase compare
LU632_RS12725 -2.2 -6.2 YciK family oxidoreductase compare
LU632_RS23360 -2.2 -6.7 Sua5/YciO/YrdC/YwlC family protein compare
LU632_RS22865 aroB -2.2 -2.5 3-dehydroquinate synthase compare
LU632_RS02085 cysQ -2.2 -3.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
LU632_RS10270 -2.1 -2.0 glucan biosynthesis protein G compare
LU632_RS21955 -2.0 -1.9 glycosyltransferase family 4 protein compare
LU632_RS26055 -2.0 -7.5 DUF2442 domain-containing protein compare
LU632_RS09240 -2.0 -8.2 DUF1852 domain-containing protein compare
LU632_RS06470 -1.9 -2.8 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
LU632_RS09905 -1.9 -11.5 aspartate/tyrosine/aromatic aminotransferase compare
LU632_RS14835 plsX -1.9 -6.7 phosphate acyltransferase PlsX compare
LU632_RS12910 -1.9 -2.1 NAD-dependent epimerase compare
LU632_RS09235 -1.9 -9.9 methionine synthase compare
LU632_RS08950 hisG -1.9 -7.5 ATP phosphoribosyltransferase compare
LU632_RS11245 slyB -1.8 -4.0 outer membrane lipoprotein SlyB compare
LU632_RS11040 -1.8 -14.0 FAD-binding oxidoreductase compare
LU632_RS08880 -1.8 -4.1 ABC transporter permease compare
LU632_RS18420 -1.8 -1.9 LysE family translocator compare
LU632_RS06675 cysM -1.8 -1.2 cysteine synthase CysM compare
LU632_RS20105 panC -1.8 -6.8 pantoate--beta-alanine ligase compare
LU632_RS08885 -1.7 -6.2 ABC transporter ATP-binding protein compare
LU632_RS16960 pheA -1.7 -12.0 bifunctional chorismate mutase/prephenate dehydratase compare
LU632_RS10295 -1.7 -5.3 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee compare
LU632_RS12905 hns -1.7 -1.5 DNA-binding transcriptional regulator H-NS compare
LU632_RS06185 ptrA -1.7 -3.5 pitrilysin compare
LU632_RS16095 sucA -1.7 -1.1 2-oxoglutarate dehydrogenase E1 component compare
LU632_RS01090 rnhA -1.7 -2.3 ribonuclease HI compare
LU632_RS02070 hflC -1.6 -3.7 protease modulator HflC compare
LU632_RS24260 trxA -1.6 -5.5 thioredoxin TrxA compare
LU632_RS02590 gpmB -1.6 -5.6 2,3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB compare
LU632_RS20100 panB -1.6 -5.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
LU632_RS20110 panD -1.6 -7.0 aspartate 1-decarboxylase compare
LU632_RS08850 rfbB -1.6 -2.8 dTDP-glucose 4,6-dehydratase compare
LU632_RS13455 cmoA -1.6 -3.6 carboxy-S-adenosyl-L-methionine synthase CmoA compare
LU632_RS05535 epd -1.6 -4.9 erythrose-4-phosphate dehydrogenase compare
LU632_RS15415 rseB -1.6 -4.3 sigma-E factor regulatory protein RseB compare
LU632_RS20495 -1.6 -4.5 hypothetical protein compare
LU632_RS17275 fghA -1.5 -10.3 S-formylglutathione hydrolase compare
LU632_RS14780 ptsG -1.5 -10.0 PTS glucose transporter subunit IIBC compare
LU632_RS02065 hflK -1.5 -2.4 FtsH protease activity modulator HflK compare
LU632_RS21295 rapZ -1.5 -6.1 RNase adapter RapZ compare
LU632_RS06610 crr -1.5 -2.7 PTS glucose transporter subunit IIA compare
LU632_RS16945 rluD -1.5 -7.5 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
LU632_RS20620 cpdA -1.5 -7.9 3',5'-cyclic-AMP phosphodiesterase compare
LU632_RS19260 panM -1.4 -3.8 aspartate 1-decarboxylase autocleavage activator PanM compare
LU632_RS15740 pncC -1.4 -4.5 nicotinamide-nucleotide amidase compare
LU632_RS21940 -1.4 -4.1 glycosyltransferase compare
LU632_RS24885 pstC -1.4 -3.3 phosphate ABC transporter permease PstC compare
LU632_RS20675 glnE -1.4 -8.0 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
LU632_RS14010 ldcA -1.4 -4.4 muramoyltetrapeptide carboxypeptidase compare
LU632_RS10275 mdoH -1.4 -3.0 glucans biosynthesis glucosyltransferase MdoH compare
LU632_RS07950 yfbR -1.4 -5.7 5'-deoxynucleotidase compare
LU632_RS06465 surE -1.3 -2.6 5'/3'-nucleotidase SurE compare
LU632_RS17785 bamB -1.3 -5.0 outer membrane protein assembly factor BamB compare
LU632_RS16835 mprA -1.3 -5.5 transcriptional repressor MprA compare
LU632_RS19715 fpr -1.3 -8.7 ferredoxin--NADP(+) reductase compare
LU632_RS24840 kup -1.3 -8.0 low affinity potassium transporter Kup compare
LU632_RS08820 -1.2 -7.0 lipopolysaccharide biosynthesis protein compare
LU632_RS02735 apaG -1.2 -6.1 Co2+/Mg2+ efflux protein ApaG compare
LU632_RS18100 htpG -1.2 -4.7 molecular chaperone HtpG compare
LU632_RS18350 tig -1.2 -5.2 trigger factor compare
LU632_RS13460 cmoB -1.2 -5.1 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
LU632_RS19450 pitA -1.2 -1.5 inorganic phosphate transporter PitA compare
LU632_RS24410 ilvM -1.2 -3.1 acetolactate synthase 2 small subunit compare
LU632_RS24895 pstB -1.1 -2.4 phosphate ABC transporter ATP-binding protein PstB compare
LU632_RS24420 -1.1 -2.2 IlvGEDA operon leader peptide compare
LU632_RS24445 -1.1 -1.4 DUF413 domain-containing protein compare
LU632_RS16475 arnT -1.0 -7.1 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase compare
LU632_RS23005 -1.0 -5.3 DeoR/GlpR family transcriptional regulator compare
LU632_RS08455 -1.0 -4.4 DUF496 family protein compare
LU632_RS04450 -1.0 -2.1 SprT-like domain-containing protein compare
LU632_RS21750 rnr -1.0 -6.0 ribonuclease R compare
LU632_RS19980 glnD -1.0 -2.4 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
LU632_RS21345 -1.0 -6.8 cell division protein ZapE compare
LU632_RS12970 sppA -1.0 -6.6 signal peptide peptidase SppA compare
LU632_RS14860 rne -1.0 -1.8 ribonuclease E compare
LU632_RS20090 pcnB -1.0 -3.1 polynucleotide adenylyltransferase PcnB compare
LU632_RS02140 -1.0 -1.9 ribosome-associated protein compare
LU632_RS09085 pgl -1.0 -1.9 6-phosphogluconolactonase compare
LU632_RS13730 -0.9 -3.0 FTR1 family protein compare
LU632_RS09915 ompC -0.9 -7.0 porin OmpC compare
LU632_RS00165 -0.9 -2.3 IS6 family transposase compare
LU632_RS24880 pstS -0.9 -3.3 phosphate ABC transporter substrate-binding protein PstS compare
LU632_RS05485 rsmE -0.9 -4.0 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
LU632_RS05915 gcvP -0.9 -7.2 aminomethyl-transferring glycine dehydrogenase compare
LU632_RS21165 greA -0.9 -3.3 transcription elongation factor GreA compare
LU632_RS10325 bssS -0.9 -4.5 biofilm formation regulator BssS compare
LU632_RS06340 barA -0.9 -3.0 two-component sensor histidine kinase BarA compare
LU632_RS05450 -0.9 -2.4 XTP/dITP diphosphatase compare
LU632_RS13015 -0.8 -6.2 YeaH/YhbH family protein compare
LU632_RS08815 -0.8 -3.7 colanic acid biosynthesis glycosyltransferase WcaL compare
LU632_RS16495 arnB -0.8 -5.8 UDP-4-amino-4-deoxy-L-arabinose aminotransferase compare


Specific Phenotypes

For 1 genes in this experiment