Experiment set6S185 for Escherichia coli BL21

Compare to:

Control_TnA

200 most important genes:

  gene name fitness t score description  
ECD_00380 -4.7 -2.5 cytochrome o ubiquinol oxidase subunit IV compare
ECD_02738 -3.2 -3.1 2-octaprenylphenol hydroxylase, FAD-dependent compare
ECD_02507 -2.7 -2.6 toxic UPF0083 family protein inhibitor of 70S ribosome formation compare
ECD_00634 -2.3 -4.3 N-acetylglucosamine-6-phosphate deacetylase compare
ECD_02549 -2.1 -8.7 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor compare
ECD_03625 -2.0 -6.0 5-methylaminomethyl-2-thiouridine modification at tRNA U34 compare
ECD_04038 -1.9 -2.0 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase compare
ECD_03590 -1.9 -2.9 tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase compare
ECD_00407 -1.9 -1.9 DUF1428 family protein compare
ECD_01681 -1.9 -2.5 integration host factor (IHF), DNA-binding protein, alpha subunit compare
ECD_03037 -1.8 -3.4 ribosome maturation factor for 30S subunits compare
ECD_00053 -1.6 -3.3 diadenosine tetraphosphatase compare
ECD_03692 -1.4 -6.3 magnesium/nickel/cobalt transporter compare
ECD_03685 -1.4 -1.0 diaminopimelate epimerase compare
ECD_01044 -1.4 -1.9 OPG biosynthetic transmembrane succinyltransferase compare
ECD_02404 -1.3 -2.0 BamABCDE complex OM biogenesis lipoprotein compare
ECD_02470 -1.3 -4.7 ATP-dependent RNA helicase compare
ECD_t00011 -1.3 -2.2 tRNA-Gln compare
ECD_01950 -1.2 -1.5 putative glycosyl transferase compare
ECD_02039 -1.2 -1.3 hypothetical protein compare
ECD_01168 -1.2 -1.2 lytic murein endotransglycosylase E compare
ECD_02382 -1.2 -2.6 putative processing element hydrogenase 4 compare
ECD_02857 -1.2 -1.2 hypothetical protein compare
ECD_01489 -1.1 -1.9 transcriptional repressor of multiple antibiotic resistance compare
ECD_02432 -1.1 -1.6 3-phenylpropionate dioxygenase, ferredoxin subunit compare
ECD_04070 -1.1 -1.9 50S ribosomal subunit protein L9 compare
ECD_03238 -1.1 -3.0 D-ribulose-5-phosphate 3-epimerase compare
ECD_01599 -1.1 -1.9 SoxR iron-sulfur cluster reduction factor component; putative membrane-associated NADH oxidoreductase of electron transport complex compare
ECD_03075 -1.1 -3.9 aerobic respiration control sensor histidine protein kinase, cognate to two-component response regulators ArcA and RssB compare
ECD_02399 -1.1 -3.1 GMP synthetase (glutamine aminotransferase) compare
ECD_03756 -1.1 -6.3 GTP-binding protein compare
ECD_01227 -1.0 -2.2 acyl-CoA esterase compare
ECD_04107 -1.0 -2.2 trehalose-6-P hydrolase compare
ECD_00487 -1.0 -1.1 Excisionase compare
ECD_01629 -1.0 -2.2 transcriptional repressor, hypoxanthine-binding compare
ECD_03659 -1.0 -0.9 thioredoxin 1 compare
ECD_02210 -1.0 -2.8 NADH:ubiquinone oxidoreductase, chain E compare
ECD_01713 -1.0 -2.1 succinylglutamate desuccinylase compare
ECD_01529 -1.0 -1.6 Qin prophage; uncharacterized protein compare
ECD_02285 -0.9 -1.3 uncharacterized protein compare
ECD_00388 -0.9 -3.6 proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases compare
ECD_01444 -0.9 -0.9 D,D-dipeptide ABC transporter permease compare
ECD_01582 -0.9 -1.2 mannose-6-phosphate isomerase compare
ECD_01352 -0.9 -2.6 fermentative D-lactate dehydrogenase, NAD-dependent compare
ECD_02206 -0.9 -2.1 NADH:ubiquinone oxidoreductase, chain I compare
ECD_02463 -0.9 -2.7 back-translocating elongation factor EF4, GTPase compare
ECD_02207 -0.9 -1.9 NADH:ubiquinone oxidoreductase, membrane subunit H compare
ECD_01034 -0.9 -1.4 curli production assembly/transport outer membrane lipoprotein compare
ECD_02209 -0.9 -3.0 NADH:ubiquinone oxidoreductase, chain F compare
ECD_01353 -0.9 -1.9 putative membrane-anchored protein, function unknown compare
ECD_01897 -0.9 -1.8 ssuEADCB/tauABCD operon transcriptional activator compare
ECD_01053 -0.9 -1.7 putative cytochrome b561 compare
ECD_03342 -0.9 -3.6 phosphate transporter, low-affinity; tellurite importer compare
ECD_01977 -0.9 -1.6 ser/thr phosphatase-related protein compare
ECD_02090 -0.9 -2.2 nucleoside permease compare
ECD_02203 -0.9 -3.6 NADH:ubiquinone oxidoreductase, membrane subunit L compare
ECD_03488 -0.8 -2.3 UDP-glucose:(heptosyl)lipopolysaccharide alpha-1,3-glucosyltransferase; lipopolysaccharide core biosynthesis protein; lipopolysaccharide glucosyltransferase I compare
ECD_02198 -0.8 -2.2 DUF1877 family protein compare
ECD_02202 -0.8 -3.1 NADH:ubiquinone oxidoreductase, membrane subunit M compare
ECD_01535 -0.8 -1.3 hypothetical protein compare
ECD_00593 -0.8 -2.2 constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA-binding protein compare
ECD_00124 -0.8 -1.4 hypoxanthine phosphoribosyltransferase compare
ECD_00865 -0.8 -2.1 arginine ABC transporter periplasmic binding protein compare
ECD_03509 -0.8 -3.5 ATP-dependent DNA helicase compare
ECD_00970 -0.8 -1.4 heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA-binding protein compare
ECD_03358 -0.8 -0.9 stress response protein acid-resistance protein compare
ECD_02130 -0.8 -1.4 nitrate reductase, small, cytochrome C550 subunit, periplasmic compare
ECD_02765 -0.8 -2.7 transketolase 1, thiamine triphosphate-binding compare
ECD_01084 -0.8 -3.1 DUF177 family protein compare
ECD_01472 -0.8 -1.2 autoinducer 2 import system permease protein compare
ECD_03455 -0.8 -5.3 mannitol-1-phosphate dehydrogenase, NAD-dependent compare
ECD_03801 -0.8 -4.1 6-phosphofructokinase I compare
ECD_04024 -0.8 -1.1 fumarate reductase (anaerobic), membrane anchor subunit compare
ECD_00938 -0.8 -1.6 aliphatic sulfonate ABC transporter permease compare
ECD_02284 -0.8 -0.7 formyl-CoA transferase, NAD(P)-binding compare
ECD_03119 -0.8 -1.3 global DNA-binding transcriptional dual regulator compare
ECD_01726 -0.8 -1.6 molybdopterin synthase sulfurtransferase compare
ECD_01401 -0.8 -2.0 gamma-aminobutyraldehyde dehydrogenase compare
ECD_04269 -0.7 -1.6 transcriptional repressor, tryptophan-binding compare
ECD_01779 -0.7 -1.3 putative reactive intermediate deaminase compare
ECD_02254 -0.7 -1.7 chorismate synthase compare
ECD_01180 -0.7 -0.9 DUF2583 family putative inner membrane protein compare
ECD_00513 -0.7 -2.0 hypothetical protein compare
ECD_01625 -0.7 -1.8 murein DD-endopeptidase, space-maker hydrolase compare
ECD_00142 -0.7 -2.1 poly(A) polymerase compare
ECD_02101 -0.7 -1.8 elongation factor P-like protein compare
ECD_02059 -0.7 -2.1 putative ABC transporter ATPase compare
ECD_02331 -0.7 -1.5 porphyrinogen oxidase, cytoplasmic compare
ECD_02726 -0.7 -2.4 site-specific tyrosine recombinase compare
ECD_01018 -0.7 -2.2 proline:sodium symporter compare
ECD_00481 -0.7 -1.5 putative periplasmic pilus chaperone compare
ECD_03897 -0.7 -2.6 glucosephosphate isomerase compare
ECD_03121 -0.7 -0.8 putative membrane protein compare
ECD_03359 -0.7 -1.7 acid-resistance membrane protein compare
ECD_02438 -0.7 -1.4 putative sugar ABC transporter permease compare
ECD_00165 -0.7 -2.3 uridylyltransferase compare
ECD_01498 -0.7 -0.9 NADP-dependent 3-hydroxy acid dehydrogenase; malonic semialdehyde reductase compare
ECD_00836 -0.7 -0.8 putative Regulatory protein compare
ECD_02671 -0.7 -1.7 putative prepilin peptidase-dependent protein compare
ECD_00628 -0.7 -1.9 heat shock protein, putative NTPase; PhoH-like protein compare
ECD_03349 -0.7 -3.9 glutathione oxidoreductase compare
ECD_02140 -0.7 -1.9 fused DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase compare
ECD_00633 -0.7 -2.2 N-acetylglucosamine-inducible nag divergent operon transcriptional repressor compare
ECD_01263 -0.7 -2.8 ribonuclease II compare
ECD_03966 -0.7 -2.4 ribose 1,5-bisphosphokinase compare
ECD_01405 -0.7 -1.0 methionine N-acyltransferase; L-amino acid N-acyltransferase compare
ECD_00681 -0.7 -0.6 succinate dehydrogenase, membrane subunit, binds cytochrome b556 compare
ECD_02397 -0.7 -1.1 outer membrane integrity lipoprotein compare
ECD_03040 -0.6 -1.6 preprotein translocase membrane subunit compare
ECD_00828 -0.6 -1.2 hypothetical protein compare
ECD_00260 -0.6 -1.3 reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide-dependent disulfide oxidoreductase family compare
ECD_00933 -0.6 -2.2 outer membrane porin 1a (Ia compare
ECD_01586 -0.6 -0.9 beta-D-glucuronidase compare
ECD_01195 -0.6 -0.9 cation transport regulator compare
ECD_03132 -0.6 -1.2 dehydroshikimate reductase, NAD(P)-binding compare
ECD_01006 -0.6 -0.9 uncharacterized protein compare
ECD_00752 -0.6 -1.1 molybdopterin synthase, large subunit compare
ECD_01312 -0.6 -0.9 O-6-alkylguanine-DNA:cysteine-protein methyltransferase compare
ECD_03696 -0.6 -0.8 DUF2628 family putative inner membrane protein compare
ECD_03242 -0.6 -1.0 shikimate kinase I compare
ECD_03508 -0.6 -1.2 tRNA mG18-2'-O-methyltransferase, SAM-dependent compare
ECD_03314 -0.6 -1.5 16S rRNA m(2)G966 methyltransferase, SAM-dependent compare
ECD_00389 -0.6 -2.4 ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease compare
ECD_00261 -0.6 -1.9 reactive chlorine species (RCS)-specific activator of the rcl genes compare
ECD_02205 -0.6 -1.6 NADH:ubiquinone oxidoreductase, membrane subunit J compare
ECD_00998 -0.6 -1.2 response regulator in two-component regulatory system with TorS compare
ECD_03500 -0.6 -2.6 ribonuclease PH compare
ECD_01642 -0.6 -1.5 putative oxidoreductase subunit compare
ECD_03669 -0.6 -2.5 TDP-4-oxo-6-deoxy-D-glucose transaminase compare
ECD_02212 -0.6 -2.6 NADH:ubiquinone oxidoreductase, chain B compare
ECD_00830 -0.6 -1.8 hypothetical protein compare
ECD_01887 -0.6 -1.2 inner membrane heme subunit for periplasmic YedYZ reductase compare
ECD_00925 -0.6 -0.8 putative S-adenosyl-L-methionine-dependent methyltransferase compare
ECD_t00077 -0.6 -0.7 tRNA-Thr compare
ECD_t00038 -0.6 -1.3 tRNA-Arg compare
ECD_00374 -0.6 -0.7 phage Phi6 host factor, ATP/GTP binding protein compare
ECD_01744 -0.6 -1.0 putative MFS sugar transporter, membrane protein compare
ECD_02077 -0.6 -1.5 methyl-galactoside transporter subunit compare
ECD_03612 -0.6 -3.3 phosphate ABC transporter periplasmic binding protein compare
ECD_02915 -0.6 -1.1 putative fimbrial-like adhesin protein compare
ECD_03036 -0.6 -1.2 transcription termination/antitermination L factor compare
ECD_03017 -0.6 -0.9 outer membrane lipoprotein compare
ECD_03257 -0.6 -1.3 response regulator in two-component regulatory system with EnvZ compare
ECD_01262 -0.6 -1.5 cyclic-di-GMP phosphodiesterase; csgD regulator; modulator of RNase II stability compare
ECD_00335 -0.6 -1.5 shikimate kinase II compare
ECD_00876 -0.6 -1.3 pyruvate dehydrogenase, thiamine triphosphate-binding, FAD-binding compare
ECD_00392 -0.6 -2.0 HU, DNA-binding transcriptional regulator, beta subunit compare
ECD_01061 -0.6 -0.9 multidrug resistance efflux transporter conferring overexpression resistance to norfloxacin and enoxacin compare
ECD_t00019 -0.6 -0.6 tRNA-Lys compare
ECD_01966 -0.6 -1.3 colanic acid production tyrosine-protein kinase; autokinase; Ugd phosphorylase compare
ECD_03262 -0.6 -0.9 putative DNA-binding transcriptional regulator compare
ECD_01104 -0.6 -1.0 putative UPF0227 family esterase compare
ECD_00596 -0.6 -1.0 TatABCE protein translocation system subunit compare
ECD_04102 -0.6 -2.3 ribosome-associated UPF0307 family protein compare
ECD_02069 -0.6 -1.0 tRNA-dihydrouridine synthase C compare
ECD_00954 -0.6 -1.5 paraquat-inducible, SoxRS-regulated inner membrane protein compare
ECD_03015 -0.5 -1.7 UPF0102 family protein compare
ECD_04194 -0.5 -1.3 uncharacterized protein compare
ECD_02525 -0.5 -1.3 DNA binding protein, nucleoid-associated compare
ECD_02204 -0.5 -0.9 NADH:ubiquinone oxidoreductase, membrane subunit K compare
ECD_02940 -0.5 -1.9 PadR family putative transcriptional regulator compare
ECD_00242 -0.5 -1.1 moco insertion factor for PaoABC aldehyde oxidoreductase compare
ECD_02211 -0.5 -2.4 NADH:ubiquinone oxidoreductase, fused CD subunit compare
ECD_00688 -0.5 -1.9 succinyl-CoA synthetase, NAD(P)-binding, alpha subunit compare
ECD_04118 -0.5 -2.4 biofilm modulator regulated by toxins; DUF386 family protein, cupin superfamily protein compare
ECD_r00015 -0.5 -2.6 23S ribosomal RNA compare
ECD_02767 -0.5 -2.6 agmatinase compare
ECD_03266 -0.5 -2.3 Fe/S biogenesis protein, putative scaffold/chaperone protein compare
ECD_00015 -0.5 -2.6 chaperone Hsp40, DnaK co-chaperone compare
ECD_03816 -0.5 -1.8 molecular chaperone and ATPase component of HslUV protease compare
ECD_01879 -0.5 -0.8 response regulator in two-component regulatory system with BarA compare
ECD_02172 -0.5 -1.5 putative L-rhamnonate transporter compare
ECD_01872 -0.5 -1.3 lipoprotein, function unknown compare
ECD_00432 -0.5 -0.8 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase compare
ECD_00257 -0.5 -1.1 putative DNA-binding transcriptional regulator compare
ECD_01481 -0.5 -1.4 glutaminase 2 compare
ECD_01982 -0.5 -1.3 putative citrate/iron-citrate/zinc-citrate efflux transporter compare
ECD_03453 -0.5 -0.9 DUF3302 family inner membrane protein compare
ECD_00956 -0.5 -0.9 DUF330 family putative lipoprotein compare
ECD_04293 -0.5 -0.9 inhibitor of glucose uptake compare
ECD_01030 -0.5 -0.8 glyoxylate/hydroxypyruvate reductase A compare
ECD_10005 -0.5 -0.9 Excisionase compare
ECD_01716 -0.5 -1.1 arginine succinyltransferase compare
ECD_00410 -0.5 -2.0 maltose O-acetyltransferase compare
ECD_02543 -0.5 -4.4 glutamate-cysteine ligase compare
ECD_02132 -0.5 -1.1 ferredoxin-type protein compare
ECD_01843 -0.5 -1.8 trimethylamine N-oxide reductase system III, catalytic subunit compare
ECD_01175 -0.5 -1.6 dihydroxyacetone kinase, PTS-dependent, dihydroxyacetone-binding subunit compare
ECD_04217 -0.5 -2.4 methylated adenine and cytosine restriction protein compare
ECD_02208 -0.5 -2.7 NADH:ubiquinone oxidoreductase, chain G compare
ECD_02522 -0.5 -2.5 cyaR sRNA-regulated protein compare
ECD_03143 -0.5 -1.7 zntA gene transcriptional activator compare
ECD_00592 -0.5 -1.2 phospholipid:lipid A palmitoyltransferase compare
ECD_01906 -0.5 -0.7 hypothetical protein compare
ECD_02995 -0.5 -1.7 toxin of the SohB(PrlF)-YhaV toxin-antitoxin system compare
ECD_04250 -0.5 -3.3 peptide chain release factor RF-3 compare
ECD_00803 -0.5 -0.9 repressor of biofilm formation by indole transport regulation compare
ECD_02973 -0.5 -0.6 DUF805 family inner membrane protein compare
ECD_00532 -0.5 -0.9 response regulator in two-component regulatory system with CusS compare
ECD_02280 -0.5 -0.7 hybrid sensory histidine kinase in two-component regulatory system with EvgA compare


Specific Phenotypes

None in this experiment

For Escherichia coli BL21 in no phage control experiments