Experiment set6S174 for Erwinia tracheiphila SCR3

Compare to:

MJM9

200 most important genes:

  gene name fitness t score description  
LU632_RS09475 mntR -5.0 -5.9 manganese-binding transcriptional regulator MntR compare
LU632_RS09460 dps -3.8 -4.5 DNA starvation/stationary phase protection protein Dps compare
LU632_RS21955 -3.1 -2.1 glycosyltransferase family 4 protein compare
LU632_RS06185 ptrA -3.0 -4.9 pitrilysin compare
LU632_RS12925 rssB -2.9 -2.0 two-component system response regulator RssB compare
LU632_RS16090 odhB -2.7 -1.8 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
LU632_RS24445 -2.4 -2.2 DUF413 domain-containing protein compare
LU632_RS19580 fabR -2.3 -2.6 HTH-type transcriptional repressor FabR compare
LU632_RS16480 -2.0 -5.4 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
LU632_RS05515 speB -1.9 -2.2 agmatinase compare
LU632_RS01090 rnhA -1.9 -1.9 ribonuclease HI compare
LU632_RS16945 rluD -1.8 -7.4 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
LU632_RS18100 htpG -1.8 -5.2 molecular chaperone HtpG compare
LU632_RS11245 slyB -1.8 -3.2 outer membrane lipoprotein SlyB compare
LU632_RS24075 yigL -1.7 -9.4 sugar/pyridoxal phosphate phosphatase YigL compare
LU632_RS17015 -1.7 -1.4 RnfH family protein compare
LU632_RS15395 lepA -1.7 -3.6 translation elongation factor 4 compare
LU632_RS18420 -1.7 -2.1 LysE family translocator compare
LU632_RS01965 -1.6 -7.6 type 1 fimbrial protein compare
LU632_RS15385 rnc -1.6 -2.5 ribonuclease III compare
LU632_RS01975 -1.6 -11.5 fimbrial biogenesis outer membrane usher protein compare
LU632_RS06465 surE -1.6 -2.8 5'/3'-nucleotidase SurE compare
LU632_RS07775 aroC -1.5 -3.7 chorismate synthase compare
LU632_RS08190 apbE -1.4 -1.3 FAD:protein FMN transferase ApbE compare
LU632_RS02140 -1.4 -3.7 ribosome-associated protein compare
LU632_RS22445 aroE -1.4 -2.5 shikimate dehydrogenase compare
LU632_RS08010 nuoK -1.4 -4.9 NADH-quinone oxidoreductase subunit NuoK compare
LU632_RS12910 -1.4 -1.6 NAD-dependent epimerase compare
LU632_RS10295 -1.4 -3.4 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee compare
LU632_RS09745 -1.4 -2.1 DNA translocase FtsK 4TM domain-containing protein compare
LU632_RS22150 typA -1.4 -3.1 ribosome-dependent GTPase TypA compare
LU632_RS15640 -1.4 -2.3 helix-turn-helix domain-containing protein compare
LU632_RS23875 dsbA -1.3 -1.5 thiol:disulfide interchange protein DsbA compare
LU632_RS09795 aroA -1.3 -6.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
LU632_RS24890 pstA -1.3 -2.3 phosphate ABC transporter permease PstA compare
LU632_RS16175 seqA -1.3 -3.1 replication initiation negative regulator SeqA compare
LU632_RS02050 miaA -1.3 -2.4 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LU632_RS24450 hdfR -1.2 -3.4 HTH-type transcriptional regulator HdfR compare
LU632_RS16095 sucA -1.2 -1.2 2-oxoglutarate dehydrogenase E1 component compare
LU632_RS10745 sirB1 -1.2 -2.3 invasion regulator SirB1 compare
LU632_RS08850 rfbB -1.2 -2.2 dTDP-glucose 4,6-dehydratase compare
LU632_RS15415 rseB -1.2 -3.2 sigma-E factor regulatory protein RseB compare
LU632_RS07190 -1.2 -4.0 tRNA-Arg compare
LU632_RS20325 -1.2 -3.7 hypothetical protein compare
LU632_RS08280 upp -1.2 -2.9 uracil phosphoribosyltransferase compare
LU632_RS14860 rne -1.1 -1.8 ribonuclease E compare
LU632_RS13675 -1.1 -1.9 tRNA-Ser compare
LU632_RS11560 pspA -1.1 -2.8 phage shock protein PspA compare
LU632_RS11825 -1.1 -1.5 hypothetical protein compare
LU632_RS07995 nuoH -1.1 -3.9 NADH-quinone oxidoreductase subunit NuoH compare
LU632_RS02465 -1.1 -1.4 IS256 family transposase compare
LU632_RS06625 cysK -1.1 -3.9 cysteine synthase A compare
LU632_RS20260 -1.1 -1.7 DUF4113 domain-containing protein compare
LU632_RS02545 serB -1.1 -1.9 phosphoserine phosphatase compare
LU632_RS25725 -1.1 -2.0 ParA family protein compare
LU632_RS13085 dsbB -1.1 -1.6 disulfide bond formation protein DsbB compare
LU632_RS17785 bamB -1.1 -3.9 outer membrane protein assembly factor BamB compare
LU632_RS19705 glpK -1.1 -2.8 glycerol kinase GlpK compare
LU632_RS15245 purE -1.0 -2.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
LU632_RS14710 -1.0 -1.8 antitermination protein compare
LU632_RS09730 trxB -1.0 -1.9 thioredoxin-disulfide reductase compare
LU632_RS19450 pitA -1.0 -1.3 inorganic phosphate transporter PitA compare
LU632_RS13950 ychF -1.0 -2.1 redox-regulated ATPase YchF compare
LU632_RS22860 -1.0 -2.8 SPOR domain-containing protein compare
LU632_RS19990 -1.0 -1.9 DUF3461 family protein compare
LU632_RS13460 cmoB -1.0 -3.7 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
LU632_RS20090 pcnB -1.0 -3.1 polynucleotide adenylyltransferase PcnB compare
LU632_RS12850 cls -1.0 -1.4 cardiolipin synthase compare
LU632_RS16285 -1.0 -1.4 tRNA-Met compare
LU632_RS19495 gorA -0.9 -1.6 glutathione-disulfide reductase compare
LU632_RS07300 mlaA -0.9 -4.5 phospholipid-binding lipoprotein MlaA compare
LU632_RS05535 epd -0.9 -3.2 erythrose-4-phosphate dehydrogenase compare
LU632_RS12725 -0.9 -3.3 YciK family oxidoreductase compare
LU632_RS06340 barA -0.9 -2.9 two-component sensor histidine kinase BarA compare
LU632_RS18295 -0.9 -1.1 ISNCY family transposase compare
LU632_RS10275 mdoH -0.9 -2.0 glucans biosynthesis glucosyltransferase MdoH compare
LU632_RS24260 trxA -0.9 -3.3 thioredoxin TrxA compare
LU632_RS12800 -0.9 -2.3 envelope biogenesis factor ElyC compare
LU632_RS05460 -0.9 -2.9 YggS family pyridoxal phosphate-dependent enzyme compare
LU632_RS03335 -0.9 -2.7 ABC transporter ATP-binding protein compare
LU632_RS20060 mrcB -0.9 -6.5 bifunctional glycosyl transferase/transpeptidase compare
LU632_RS05025 -0.9 -1.1 TIGR03749 family integrating conjugative element protein compare
LU632_RS21700 fklB -0.9 -1.4 peptidylprolyl isomerase compare
LU632_RS23220 -0.9 -1.5 VirK/YbjX family protein compare
LU632_RS04650 -0.9 -3.0 hypothetical protein compare
LU632_RS05985 recJ -0.9 -3.0 single-stranded-DNA-specific exonuclease RecJ compare
LU632_RS22365 pgi -0.9 -5.6 glucose-6-phosphate isomerase compare
LU632_RS15690 gshA -0.9 -1.2 glutamate--cysteine ligase compare
LU632_RS14540 -0.9 -2.7 3'-5' exoribonuclease compare
LU632_RS08890 gndA -0.9 -2.2 NADP-dependent phosphogluconate dehydrogenase compare
LU632_RS07855 dedD -0.9 -2.5 cell division protein DedD compare
LU632_RS01160 gpt -0.9 -1.5 xanthine phosphoribosyltransferase compare
LU632_RS18500 tgt -0.8 -2.0 tRNA guanosine(34) transglycosylase Tgt compare
LU632_RS02730 rsmA -0.8 -1.9 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
LU632_RS13455 cmoA -0.8 -2.0 carboxy-S-adenosyl-L-methionine synthase CmoA compare
LU632_RS22865 aroB -0.8 -1.7 3-dehydroquinate synthase compare
LU632_RS01020 purH -0.8 -3.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LU632_RS21940 -0.8 -2.8 glycosyltransferase compare
LU632_RS19815 gmhB -0.8 -1.0 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
LU632_RS07990 nuoG -0.8 -5.1 NADH-quinone oxidoreductase subunit NuoG compare
LU632_RS08860 rfbA -0.8 -5.6 glucose-1-phosphate thymidylyltransferase RfbA compare
LU632_RS22945 -0.8 -1.3 hypothetical protein compare
LU632_RS09085 pgl -0.8 -1.5 6-phosphogluconolactonase compare
LU632_RS16850 -0.8 -2.8 MFS transporter compare
LU632_RS06260 -0.8 -3.3 DUF423 domain-containing protein compare
LU632_RS26110 -0.8 -4.0 ParA family protein compare
LU632_RS21710 rplI -0.8 -1.6 50S ribosomal protein L9 compare
LU632_RS16475 arnT -0.8 -5.3 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase compare
LU632_RS16050 ybgC -0.8 -2.6 tol-pal system-associated acyl-CoA thioesterase compare
LU632_RS22955 -0.8 -5.1 RNA-binding transcriptional accessory protein compare
LU632_RS01600 gpM -0.8 -3.2 phage terminase small subunit compare
LU632_RS21295 rapZ -0.8 -3.6 RNase adapter RapZ compare
LU632_RS06675 cysM -0.8 -0.8 cysteine synthase CysM compare
LU632_RS19185 -0.8 -2.1 IS256 family transposase compare
LU632_RS10885 -0.8 -2.9 IS5 family transposase compare
LU632_RS09245 -0.8 -3.2 L,D-transpeptidase family protein compare
LU632_RS10685 -0.8 -1.2 hypothetical protein compare
LU632_RS23845 -0.8 -2.1 DUF1493 family protein compare
LU632_RS08025 nuoN -0.8 -4.1 NADH-quinone oxidoreductase subunit NuoN compare
LU632_RS24150 -0.8 -1.3 lipoprotein compare
LU632_RS24885 pstC -0.7 -2.0 phosphate ABC transporter permease PstC compare
LU632_RS07985 nuoF -0.7 -4.4 NADH-quinone oxidoreductase subunit NuoF compare
LU632_RS06585 -0.7 -1.3 FlxA-like family protein compare
LU632_RS26015 -0.7 -3.8 hypothetical protein compare
LU632_RS03950 -0.7 -3.8 hypothetical protein compare
LU632_RS09470 ompX -0.7 -3.7 outer membrane protein OmpX compare
LU632_RS23735 -0.7 -1.6 hypothetical protein compare
LU632_RS08335 -0.7 -0.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LU632_RS13645 -0.7 -1.4 IS256 family transposase compare
LU632_RS22710 -0.7 -2.6 transcriptional regulator compare
LU632_RS21165 greA -0.7 -3.2 transcription elongation factor GreA compare
LU632_RS00895 tuf -0.7 -3.4 elongation factor Tu compare
LU632_RS02210 yraP -0.7 -2.3 divisome-associated lipoprotein YraP compare
LU632_RS10170 -0.7 -1.7 autoinducer binding domain-containing protein compare
LU632_RS05450 -0.7 -1.6 XTP/dITP diphosphatase compare
LU632_RS09685 artP -0.7 -2.0 arginine ABC transporter ATP-binding protein ArtP compare
LU632_RS25930 -0.7 -5.7 acyltransferase compare
LU632_RS09620 -0.7 -2.6 inner membrane protein YbjM compare
LU632_RS14340 -0.7 -1.8 hypothetical protein compare
LU632_RS08410 -0.7 -1.3 IS91 family transposase compare
LU632_RS02615 thrB -0.7 -2.6 homoserine kinase compare
LU632_RS08260 ppk1 -0.7 -3.8 polyphosphate kinase 1 compare
LU632_RS20495 -0.7 -2.4 hypothetical protein compare
LU632_RS09670 artM -0.7 -2.3 arginine ABC transporter permease ArtM compare
LU632_RS21950 rfaQ -0.7 -2.8 putative lipopolysaccharide heptosyltransferase III compare
LU632_RS21515 fis -0.7 -3.6 DNA-binding transcriptional regulator Fis compare
LU632_RS14165 -0.7 -2.3 integrase arm-type DNA-binding domain-containing protein compare
LU632_RS06410 -0.7 -1.0 phosphoadenylyl-sulfate reductase compare
LU632_RS15250 purK -0.7 -2.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
LU632_RS07890 yfcD -0.6 -2.2 NUDIX hydrolase YfcD compare
LU632_RS16115 sdhC -0.6 -3.6 succinate dehydrogenase cytochrome b556 subunit compare
LU632_RS07965 -0.6 -2.7 NADH-quinone oxidoreductase subunit A compare
LU632_RS16495 arnB -0.6 -3.9 UDP-4-amino-4-deoxy-L-arabinose aminotransferase compare
LU632_RS22090 -0.6 -1.3 pyocin activator PrtN family protein compare
LU632_RS00070 -0.6 -1.7 hypothetical protein compare
LU632_RS07975 nuoC -0.6 -4.6 NADH-quinone oxidoreductase subunit C/D compare
LU632_RS16110 sdhD -0.6 -3.1 succinate dehydrogenase membrane anchor subunit compare
LU632_RS17650 -0.6 -1.4 hypothetical protein compare
LU632_RS18875 -0.6 -0.8 IS256 family transposase compare
LU632_RS21880 secB -0.6 -2.3 protein-export chaperone SecB compare
LU632_RS19460 uspA -0.6 -1.5 universal stress protein UspA compare
LU632_RS00165 -0.6 -1.7 IS6 family transposase compare
LU632_RS08005 nuoJ -0.6 -3.3 NADH-quinone oxidoreductase subunit J compare
LU632_RS14775 hinT -0.6 -2.1 purine nucleoside phosphoramidase compare
LU632_RS08000 nuoI -0.6 -2.0 NADH-quinone oxidoreductase subunit NuoI compare
LU632_RS03495 -0.6 -2.0 phage regulatory CII family protein compare
LU632_RS10665 -0.6 -1.0 hypothetical protein compare
LU632_RS21225 mlaB -0.6 -2.6 lipid asymmetry maintenance protein MlaB compare
LU632_RS04290 -0.6 -1.9 hypothetical protein compare
LU632_RS05225 -0.6 -2.2 hypothetical protein compare
LU632_RS06435 cysC -0.6 -3.0 adenylyl-sulfate kinase compare
LU632_RS10045 -0.6 -2.1 YccF domain-containing protein compare
LU632_RS09985 pqiC -0.6 -2.3 membrane integrity-associated transporter subunit PqiC compare
LU632_RS02295 -0.6 -1.4 DUF1090 domain-containing protein compare
LU632_RS10270 -0.6 -0.9 glucan biosynthesis protein G compare
LU632_RS08050 -0.6 -2.7 hypothetical protein compare
LU632_RS16425 -0.6 -3.0 GNAT family N-acetyltransferase compare
LU632_RS08750 asmA -0.6 -3.9 outer membrane assembly protein AsmA compare
LU632_RS00745 -0.6 -0.8 hypothetical protein compare
LU632_RS15635 -0.6 -1.5 regulatory phage cox family protein compare
LU632_RS06610 crr -0.6 -1.5 PTS glucose transporter subunit IIA compare
LU632_RS16100 -0.6 -1.9 succinate dehydrogenase iron-sulfur subunit compare
LU632_RS22715 fkpA -0.6 -2.6 FKBP-type peptidyl-prolyl cis-trans isomerase compare
LU632_RS15375 recO -0.6 -2.6 DNA repair protein RecO compare
LU632_RS08015 nuoL -0.6 -3.9 NADH-quinone oxidoreductase subunit L compare
LU632_RS14215 -0.6 -1.1 recombination protein NinB compare
LU632_RS13615 -0.6 -2.3 molecular chaperone compare
LU632_RS24880 pstS -0.6 -2.3 phosphate ABC transporter substrate-binding protein PstS compare
LU632_RS18455 panE -0.6 -2.6 2-dehydropantoate 2-reductase compare
LU632_RS14660 -0.6 -2.0 IS5 family transposase compare
LU632_RS01085 -0.6 -1.7 class I SAM-dependent methyltransferase compare
LU632_RS10050 helD -0.6 -3.0 DNA helicase IV compare
LU632_RS13140 -0.6 -2.3 Slp family lipoprotein compare
LU632_RS21675 -0.6 -0.8 hypothetical protein compare
LU632_RS20265 -0.6 -1.8 IS630 family transposase compare
LU632_RS07860 cvpA -0.6 -2.3 colicin V production protein compare
LU632_RS12425 -0.6 -1.1 hypothetical protein compare
LU632_RS18215 -0.6 -1.8 hypothetical protein compare
LU632_RS18525 -0.6 -1.1 hypothetical protein compare
LU632_RS12500 pyrF -0.6 -2.7 orotidine-5'-phosphate decarboxylase compare


Specific Phenotypes

For 1 genes in this experiment