Experiment set6S174 for Escherichia coli BL21

Compare to:

Bas34

200 most detrimental genes:

  gene name fitness t score description  
ECD_01565 +1.2 3.0 putative arabinose efflux transporter compare
ECD_01812 +1.1 3.1 CopC family protein compare
ECD_02280 +1.1 2.7 hybrid sensory histidine kinase in two-component regulatory system with EvgA compare
ECD_04185 +1.1 1.1 periplasmic chaperone compare
ECD_00502 +1.0 2.2 DLP12 prophage; putative antitermination protein compare
ECD_04018 +1.0 1.9 entericidin A membrane lipoprotein, antidote entericidin B compare
ECD_00432 +1.0 2.1 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase compare
ECD_00811 +1.0 1.8 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase; pyrimidine phosphatase; riboflavin synthesis compare
ECD_01696 +0.9 1.3 2-deoxyglucose-6-P phosphatase compare
ECD_00843 +0.9 2.3 phage baseplate assembly protein compare
ECD_02034 +0.9 1.7 hypothetical protein compare
ECD_00946 +0.9 1.3 putative fimbriae protein compare
ECD_01305 +0.8 2.7 S9-like protein non-peptidase family protein compare
ECD_00509 +0.8 2.6 DLP12 prophage; putative lipoprotein compare
ECD_01561 +0.8 2.0 H(+)/Cl(-) exchange transporter compare
ECD_00704 +0.8 1.9 nicotinamide riboside transporter compare
ECD_01556 +0.8 1.5 putative selenate reductase, periplasmic compare
ECD_00322 +0.8 1.5 putative transcriptional regulator compare
ECD_01666 +0.8 2.5 putative electron transfer flavoprotein subunit compare
ECD_01216 +0.8 2.3 UPF0056 family inner membrane protein compare
ECD_02058 +0.8 1.6 putative ABC transporter permease compare
ECD_02230 +0.7 2.3 transposase_31 family protein compare
ECD_01452 +0.7 1.8 putative periplasmic M16 family zinc metalloendopeptidase compare
ECD_02033 +0.7 1.7 hypothetical protein compare
ECD_03535 +0.7 1.9 putative IS protein compare
ECD_01886 +0.7 1.6 membrane-anchored, periplasmic TMAO, DMSO reductase compare
ECD_01435 +0.7 1.4 putative DNA-binding transcriptional regulator compare
ECD_00695 +0.7 1.6 putative inner membrane protein in cydABX-ybgE operon compare
ECD_01167 +0.7 1.6 murein tetrapeptide carboxypeptidase; LD-carboxypeptidase A compare
ECD_01906 +0.7 1.2 hypothetical protein compare
ECD_00765 +0.7 1.3 DUF1768 family protein compare
ECD_02285 +0.7 1.3 uncharacterized protein compare
ECD_01277 +0.7 1.5 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; succinate semialdehyde dehydrogenase compare
ECD_03355 +0.7 1.1 Putative LuxR family repressor for dicarboxylate transport compare
ECD_01744 +0.7 1.8 putative MFS sugar transporter, membrane protein compare
ECD_00209 +0.6 1.7 lipoprotein compare
ECD_01898 +0.6 1.5 nitrogen assimilation regulon transcriptional regulator; autorepressor compare
ECD_00130 +0.6 2.8 aspartate 1-decarboxylase compare
ECD_01061 +0.6 1.8 multidrug resistance efflux transporter conferring overexpression resistance to norfloxacin and enoxacin compare
ECD_02103 +0.6 1.5 Zn-stimulated GTPase involved in zinc homeostasis; mutants are cadmium and EDTA sensitive; Zn(2+) binding protein compare
ECD_03481 +0.6 2.1 UDP-galactose:(Galactosyl) LPS alpha1,2-galactosyltransferase compare
ECD_02380 +0.6 1.5 hydrogenase 4, Fe-S subunit compare
ECD_00706 +0.6 1.1 putative periplasmic protein compare
ECD_03212 +0.6 1.3 stationary phase-induced protein, putative toxin compare
ECD_02874 +0.6 2.3 DUF2623 family protein compare
ECD_02116 +0.6 2.8 spermidine nucleoid-associated protein compare
ECD_00844 +0.6 2.4 putative phage tail protein compare
ECD_00513 +0.6 2.2 hypothetical protein compare
ECD_03653 +0.6 1.9 peptidyl-prolyl cis-trans isomerase C (rotamase C) compare
ECD_03353 +0.6 1.6 hypothetical protein compare
ECD_02080 +0.6 1.9 galactose- and fucose-inducible galactose regulon transcriptional isorepressor; mgl operon transcriptional repressor; autorepressor compare
ECD_00997 +0.6 1.8 periplasmic sensory protein associated with the TorRS two-component regulatory system compare
ECD_00753 +0.6 1.9 putative acetate transporter; BAX Inhibitor-1 family inner membrane protein compare
ECD_00864 +0.6 1.9 23S rRNA m(5)U747 methyltransferase, SAM-dependent compare
ECD_01953 +0.6 1.5 colanic biosynthesis UDP-glucose lipid carrier transferase compare
ECD_00374 +0.6 0.9 phage Phi6 host factor, ATP/GTP binding protein compare
ECD_02283 +0.6 1.3 oxalyl CoA decarboxylase, ThDP-dependent compare
ECD_00566 +0.6 2.3 DUF466 family protein compare
ECD_01692 +0.6 1.1 6-phosphofructokinase II compare
ECD_00583 +0.6 2.8 citrate lyase, citrate-ACP transferase (alpha) subunit compare
ECD_01571 +0.6 1.7 pyridine nucleotide transhydrogenase, beta subunit compare
ECD_01651 +0.6 1.8 SufBCD Fe-S cluster assembly scaffold protein, ATP-binding protein compare
ECD_02229 +0.6 2.1 putative NAD-dependent nucleotide-sugar epimerase compare
ECD_01601 +0.6 0.9 SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport complex compare
ECD_00233 +0.6 2.0 xanthine phosphoribosyltransferase; xanthine-guanine phosphoribosyltransferase compare
ECD_01320 +0.5 1.7 ATP-dependent RNA helicase, specific for 23S rRNA compare
ECD_01802 +0.5 2.2 RNA chaperone, putative ProP translation regulator compare
ECD_04123 +0.5 1.6 DUF898 family inner membrane protein compare
ECD_00156 +0.5 1.9 UPF0126 family inner membrane protein compare
ECD_03456 +0.5 1.6 mannitol operon repressor compare
ECD_00555 +0.5 1.5 ferrienterobactin ABC transporter ATPase compare
ECD_02792 +0.5 0.9 oxidative damage protective factor for iron-sulfur proteins compare
ECD_02081 +0.5 1.8 DUF418 family putative inner membrane protein compare
ECD_02710 +0.5 1.1 CTP:molybdopterin cytidylyltransferase compare
ECD_04051 +0.5 1.3 UPF0719 family inner membrane protein compare
ECD_00228 +0.5 1.8 mRNA interferase toxin of the YafO-YafN toxin-antitoxin system compare
ECD_02415 +0.5 2.6 aminopeptidase B compare
ECD_03115 +0.5 2.0 DUF997 family putative inner membrane protein compare
ECD_01896 +0.5 0.5 putative multdrug exporter, MATE family compare
ECD_00813 +0.5 1.0 transcriptional regulator of csgD and ybiJI; autoregulator compare
ECD_01793 +0.5 1.6 stress protein, member of the CspA-family compare
ECD_00867 +0.5 1.4 arginine ABC transporter permease compare
ECD_01478 +0.5 1.1 altronate oxidoreductase, NAD-dependent compare
ECD_02130 +0.5 0.8 nitrate reductase, small, cytochrome C550 subunit, periplasmic compare
ECD_01255 +0.5 1.1 phosphatidylglycerophosphatase B compare
ECD_00480 +0.5 1.4 FimA-like protein compare
ECD_01794 +0.5 2.7 DUF2527 family heat-induced protein compare
ECD_01317 +0.5 1.7 DNA endonuclease compare
ECD_03316 +0.5 2.6 DUF2500 family protein compare
ECD_02028 +0.5 1.2 putative kinase compare
ECD_01044 +0.5 1.1 OPG biosynthetic transmembrane succinyltransferase compare
ECD_00274 +0.5 1.4 ankyrin repeat protein compare
ECD_00985 +0.5 1.3 O-antigen capsule forming protein-tyrosine-phosphatase; Etk-P dephosphorylase compare
ECD_00136 +0.5 1.5 putative fimbrial-like adhesin protein compare
ECD_02373 +0.5 1.2 hydrogenase 4, 4Fe-4S subunit compare
ECD_01873 +0.5 1.7 ferritin iron storage protein (cytoplasmic) compare
ECD_00601 +0.5 2.4 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) compare
ECD_00917 +0.5 2.4 ComEC family inner membrane protein compare
ECD_03217 +0.5 1.5 nitrite reductase (NADH) small subunit compare
ECD_00607 +0.5 1.5 putative alpha-ribazole-5'-P phosphatase compare
ECD_00689 +0.5 1.3 transcriptional repressor for the mannosyl-D-glycerate catabolic operon compare
ECD_02118 +0.5 1.8 essential inner membrane DUF3413 domain-containing protein; lipid A production and membrane permeability factor compare
ECD_01300 +0.5 1.6 aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase compare
ECD_00589 +0.5 1.5 sensory histidine kinase in two-component regulatory system with CitB compare
ECD_01293 +0.5 1.4 putative family 65 glycosyl hydrolase compare
ECD_01064 +0.4 0.9 putative oxidoreductase compare
ECD_02576 +0.4 2.1 protein involved in nickel insertion into hydrogenases 3 compare
ECD_01958 +0.4 1.0 bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase compare
ECD_00020 +0.4 1.3 hypothetical protein compare
ECD_02899 +0.4 0.7 inner membrane protein compare
ECD_04362 +0.4 0.6 hypothetical protein compare
ECD_02174 +0.4 1.3 putative DNA-binding transcriptional regulator for the rhm operon compare
ECD_01365 +0.4 0.7 putative esterase compare
ECD_02064 +0.4 1.5 D-alanyl-D-alanine endopeptidase compare
ECD_04049 +0.4 0.7 PspA/IM30 family protein compare
ECD_00418 +0.4 0.8 primosomal replication protein N'' compare
ECD_02067 +0.4 1.1 putative oxidoreductase compare
ECD_00741 +0.4 2.2 7,8-diaminopelargonic acid synthase, PLP-dependent compare
ECD_00241 +0.4 2.4 putative transcriptional regulator compare
ECD_00939 +0.4 1.2 alkanesulfonate monooxygenase, FMNH(2)-dependent compare
ECD_00967 +0.4 0.6 methylglyoxal synthase compare
ECD_00497 +0.4 2.0 DLP12 prophage; uncharacterized protein compare
ECD_00547 +0.4 1.6 toxic polypeptide, small compare
ECD_01979 +0.4 1.3 multidrug efflux system, subunit A compare
ECD_01067 +0.4 0.8 anti-sigma factor for FliA (sigma 28) compare
ECD_00238 +0.4 2.0 outer membrane phosphoporin protein E compare
ECD_01292 +0.4 1.5 putative NADH-binding oxidoreductase compare
ECD_02825 +0.4 0.7 Pyrophosphorylase compare
ECD_00860 +0.4 1.9 putrescine ABC transporter ATPase compare
ECD_01048 +0.4 0.9 multicopy suppressor of secY and secA compare
ECD_02387 +0.4 1.2 putative oxidoreductase compare
ECD_00467 +0.4 1.7 ureidoglycolate dehydrogenase compare
ECD_03131 +0.4 1.1 DUF1488 family protein compare
ECD_01861 +0.4 1.3 proton conductor component of flagella motor compare
ECD_00950 +0.4 0.8 FtsZ stabilizer compare
ECD_03785 +0.4 1.0 putative enzyme IIA component of PTS compare
ECD_02024 +0.4 1.1 D-tagatose 1,6-bisphosphate aldolase 2, catalytic subunit compare
ECD_03073 +0.4 2.1 biosynthetic peptidoglycan transglycosylase compare
ECD_01681 +0.4 0.6 integration host factor (IHF), DNA-binding protein, alpha subunit compare
ECD_02135 +0.4 1.3 ferredoxin-type protein, role in electron transfer to periplasmic nitrate reductase NapA compare
ECD_02215 +0.4 2.4 glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase compare
ECD_01405 +0.4 0.9 methionine N-acyltransferase; L-amino acid N-acyltransferase compare
ECD_00019 +0.4 2.1 transcriptional activator of nhaA compare
ECD_00592 +0.4 1.1 phospholipid:lipid A palmitoyltransferase compare
ECD_01928 +0.4 0.8 phosphoribosyl-AMP cyclohydrolase and phosphoribosyl-ATP pyrophosphatase compare
ECD_02909 +0.4 1.3 DUF1190 family protein compare
ECD_02429 +0.4 1.4 hca operon transcriptional regulator compare
ECD_03458 +0.4 1.3 ribosome-associated DUF2810 family protein compare
ECD_01181 +0.4 1.1 C4-dicarboxylic acid transporter compare
ECD_02968 +0.4 1.6 DUF1469 family inner membrane protein compare
ECD_02163 +0.4 1.0 acid-inducible Kdo/WaaP family putative kinase compare
ECD_00818 +0.4 1.0 hypothetical protein compare
ECD_00872 +0.4 1.2 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent; OM lipoprotein compare
ECD_02694 +0.4 0.5 putative LuxR family transcriptional regulator compare
ECD_02129 +0.4 1.6 quinol dehydrogenase, electron source for NapAB compare
ECD_01069 +0.4 1.1 flagellar component of cell-proximal portion of basal-body rod compare
ECD_02299 +0.4 1.7 putative ion channel protein compare
ECD_01379 +0.4 0.7 putative DNA-binding transcriptional regulator compare
ECD_02297 +0.4 0.6 putative enzyme IIB component of PTS compare
ECD_00949 +0.4 0.8 dihydro-orotate oxidase, FMN-linked compare
ECD_01261 +0.4 1.0 global regulator of transcription; DeoR family compare
ECD_02524 +0.4 1.1 DUF2892 family inner membrane rhodanese compare
ECD_04392 +0.4 0.6 uncharacterized protein compare
ECD_00376 +0.4 1.3 hypothetical protein compare
ECD_02593 +0.4 3.2 L-isoaspartate protein carboxylmethyltransferase type II compare
ECD_00850 +0.4 0.9 putative regulator of late gene expression compare
ECD_00093 +0.4 1.9 D-alanine:D-alanine ligase compare
ECD_00459 +0.4 0.9 tartronate semialdehyde reductase, NADH-dependent compare
ECD_01319 +0.4 1.4 putative Zn(II) transporter compare
ECD_01486 +0.4 0.8 UPF0056 family inner membrane protein compare
ECD_03688 +0.4 1.9 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase; pyrimidine phosphatase; riboflavin synthesis compare
ECD_02833 +0.4 0.6 putative type II secretion protein GspI compare
ECD_02879 +0.4 1.6 membrane spanning protein in TonB-ExbB-ExbD complex compare
ECD_02251 +0.4 1.1 Elongation Factor P Lys34 hydroxylase compare
ECD_02313 +0.4 1.7 sulfate transporter, sulfite inhibited compare
ECD_03064 +0.4 1.0 periplasmic membrane-anchored LPS-binding protein; LPS export protein compare
ECD_02104 +0.4 0.8 lipid A 1-diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1-phosphate phosphotransferase compare
ECD_03356 +0.4 1.4 putative Mg(2+) transport ATPase, inner membrane protein compare
ECD_02021 +0.4 1.9 D-tagatose 1,6-bisphosphate aldolase 2, subunit compare
ECD_03542 +0.3 2.0 putative arabinose efflux transporter compare
ECD_00702 +0.3 1.5 periplasmic TolA-binding protein compare
ECD_04187 +0.3 1.2 minor component of type 1 fimbriae compare
ECD_02083 +0.3 1.4 S-formylglutathione hydrolase compare
ECD_03623 +0.3 1.0 ATP synthase, membrane-bound accessory factor compare
ECD_02900 +0.3 1.4 NADPH quinone reductase compare
ECD_00235 +0.3 1.5 DNA-binding transcriptional regulator compare
ECD_00969 +0.3 0.4 putative CoA-binding protein compare
ECD_03532 +0.3 1.2 hypothetical protein compare
ECD_04061 +0.3 1.5 L-ascorbate-specific enzyme IIB component of PTS compare
ECD_01830 +0.3 1.0 zinc ABC transporter permease compare
ECD_00347 +0.3 1.4 response regulator in two-component regulatory system with PhoR compare
ECD_03230 +0.3 1.1 DUF2620 family protein compare
ECD_00838 +0.3 0.9 putative phage tail protein compare
ECD_04259 +0.3 1.1 phosphopentomutase compare
ECD_04116 +0.3 1.6 c-di-GMP-binding biofilm dispersal mediator protein compare
ECD_00276 +0.3 1.4 putative NAD(P)-binding succinyl-CoA synthase compare
ECD_01201 +0.3 0.8 nitrate/nitrite transporter compare
ECD_01760 +0.3 0.6 putative MFS transporter, inner membrane protein compare
ECD_02713 +0.3 1.6 putative oxidoreductase compare
ECD_01479 +0.3 0.6 putative membrane-bound diguanylate cyclase compare


Specific Phenotypes

None in this experiment

For Escherichia coli BL21 in phage experiments

For phage MOI 10 across organisms