Experiment set6S167 for Escherichia coli BL21

Compare to:

Laval1374

200 most important genes:

  gene name fitness t score description  
ECD_02432 -2.2 -2.5 3-phenylpropionate dioxygenase, ferredoxin subunit compare
ECD_03119 -2.1 -3.0 global DNA-binding transcriptional dual regulator compare
ECD_03685 -2.0 -1.4 diaminopimelate epimerase compare
ECD_00176 -1.8 -2.1 periplasmic chaperone compare
ECD_00053 -1.8 -3.7 diadenosine tetraphosphatase compare
ECD_01240 -1.7 -3.5 PHP domain protein compare
ECD_03037 -1.6 -4.0 ribosome maturation factor for 30S subunits compare
ECD_t00011 -1.6 -3.3 tRNA-Gln compare
ECD_02607 -1.6 -2.1 phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent compare
ECD_01444 -1.5 -1.5 D,D-dipeptide ABC transporter permease compare
ECD_00802 -1.4 -2.0 ribosomal protein S12 methylthiotransferase compare
ECD_01250 -1.4 -2.5 DNA topoisomerase I, omega subunit compare
ECD_00834 -1.4 -2.3 putative capsid scaffolding protein compare
ECD_03897 -1.4 -4.9 glucosephosphate isomerase compare
ECD_01721 -1.3 -1.9 TVP38/TMEM64 family inner membrane protein compare
ECD_03692 -1.3 -6.3 magnesium/nickel/cobalt transporter compare
ECD_03075 -1.3 -5.0 aerobic respiration control sensor histidine protein kinase, cognate to two-component response regulators ArcA and RssB compare
ECD_03625 -1.3 -4.1 5-methylaminomethyl-2-thiouridine modification at tRNA U34 compare
ECD_00634 -1.2 -2.9 N-acetylglucosamine-6-phosphate deacetylase compare
ECD_02238 -1.2 -1.9 colicin V production protein compare
ECD_02738 -1.2 -2.0 2-octaprenylphenol hydroxylase, FAD-dependent compare
ECD_01826 -1.2 -2.7 myristoyl-acyl carrier protein (ACP)-dependent acyltransferase compare
ECD_01679 -1.2 -2.5 glutathione peroxidase compare
ECD_00015 -1.2 -5.2 chaperone Hsp40, DnaK co-chaperone compare
ECD_03590 -1.1 -2.2 tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase compare
ECD_02206 -1.1 -1.9 NADH:ubiquinone oxidoreductase, chain I compare
ECD_02549 -1.1 -6.0 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor compare
ECD_01452 -1.1 -2.4 putative periplasmic M16 family zinc metalloendopeptidase compare
ECD_04049 -1.1 -1.5 PspA/IM30 family protein compare
ECD_02220 -1.1 -1.5 UPF0208 family inner membrane protein compare
ECD_04070 -1.1 -2.6 50S ribosomal subunit protein L9 compare
ECD_03801 -1.0 -6.1 6-phosphofructokinase I compare
ECD_01312 -1.0 -2.0 O-6-alkylguanine-DNA:cysteine-protein methyltransferase compare
ECD_00050 -1.0 -3.1 potassium-efflux system ancillary protein for KefC, glutathione-regulated; quinone oxidoreductase, FMN-dependent compare
ECD_02765 -1.0 -3.5 transketolase 1, thiamine triphosphate-binding compare
ECD_04107 -1.0 -2.0 trehalose-6-P hydrolase compare
ECD_01835 -1.0 -1.3 UPF0082 family protein compare
ECD_00082 -1.0 -1.8 RsmH methytransferase inhibitor compare
ECD_02470 -1.0 -3.4 ATP-dependent RNA helicase compare
ECD_01488 -0.9 -2.0 putative phage protein compare
ECD_02318 -0.9 -1.1 pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase compare
ECD_00633 -0.9 -2.4 N-acetylglucosamine-inducible nag divergent operon transcriptional repressor compare
ECD_00014 -0.9 -1.8 chaperone Hsp70, with co-chaperone DnaJ compare
ECD_04038 -0.9 -1.2 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase compare
ECD_10005 -0.9 -1.6 Excisionase compare
ECD_00933 -0.9 -2.6 outer membrane porin 1a (Ia compare
ECD_02525 -0.9 -1.5 DNA binding protein, nucleoid-associated compare
ECD_00442 -0.8 -1.2 iron export ABC transporter permease; peroxide resistance protein compare
ECD_02459 -0.8 -1.7 gap repair protein compare
ECD_01435 -0.8 -1.6 putative DNA-binding transcriptional regulator compare
ECD_01084 -0.8 -2.6 DUF177 family protein compare
ECD_01039 -0.8 -1.4 curlin subunit, amyloid curli fibers, cryptic compare
ECD_02201 -0.8 -3.6 NADH:ubiquinone oxidoreductase, membrane subunit N compare
ECD_04024 -0.8 -0.9 fumarate reductase (anaerobic), membrane anchor subunit compare
ECD_01080 -0.8 -2.6 endoribonuclease; RNA-binding protein compare
ECD_00574 -0.8 -2.8 alkyl hydroperoxide reductase, C22 subunit compare
ECD_01368 -0.8 -1.6 putative ATP-dependent helicase compare
ECD_01096 -0.7 -2.3 putative DNase compare
ECD_02777 -0.7 -3.4 glutathione synthetase compare
ECD_03756 -0.7 -4.9 GTP-binding protein compare
ECD_04051 -0.7 -1.5 UPF0719 family inner membrane protein compare
ECD_00795 -0.7 -2.1 Isoaspartyl peptidase compare
ECD_02209 -0.7 -2.8 NADH:ubiquinone oxidoreductase, chain F compare
ECD_02456 -0.7 -1.4 putative 4Fe-4S cluster-containing protein compare
ECD_02132 -0.7 -1.6 ferredoxin-type protein compare
ECD_01352 -0.7 -2.3 fermentative D-lactate dehydrogenase, NAD-dependent compare
ECD_04030 -0.7 -1.2 phosphatidylserine decarboxylase compare
ECD_03458 -0.7 -3.1 ribosome-associated DUF2810 family protein compare
ECD_01227 -0.7 -1.3 acyl-CoA esterase compare
ECD_01040 -0.7 -1.6 curli assembly protein compare
ECD_02548 -0.7 -2.0 regulatory protein for RecA compare
ECD_02032 -0.7 -1.9 hydoxyethylthiazole kinase compare
ECD_03455 -0.7 -5.1 mannitol-1-phosphate dehydrogenase, NAD-dependent compare
ECD_02463 -0.7 -2.3 back-translocating elongation factor EF4, GTPase compare
ECD_02826 -0.7 -0.9 hypothetical protein compare
ECD_02984 -0.7 -1.5 L-threonine dehydratase, catabolic compare
ECD_03797 -0.7 -3.4 sensory histidine kinase in two-component regulatory system with CpxR compare
ECD_03342 -0.6 -3.0 phosphate transporter, low-affinity; tellurite importer compare
ECD_02175 -0.6 -1.4 inactive PncC family protein compare
ECD_01681 -0.6 -1.3 integration host factor (IHF), DNA-binding protein, alpha subunit compare
ECD_01557 -0.6 -2.0 S- and N-oxide reductase, A subunit, periplasmic compare
ECD_03611 -0.6 -2.2 phosphate ABC transporter permease compare
ECD_03349 -0.6 -3.7 glutathione oxidoreductase compare
ECD_01896 -0.6 -1.1 putative multdrug exporter, MATE family compare
ECD_02211 -0.6 -2.9 NADH:ubiquinone oxidoreductase, fused CD subunit compare
ECD_04039 -0.6 -3.1 global sRNA chaperone; HF-I, host factor for RNA phage Q beta replication compare
ECD_01953 -0.6 -1.8 colanic biosynthesis UDP-glucose lipid carrier transferase compare
ECD_02399 -0.6 -2.2 GMP synthetase (glutamine aminotransferase) compare
ECD_03731 -0.6 -1.5 TatABCE protein translocation system subunit compare
ECD_02366 -0.6 -2.6 elongator methionine tRNA (ac4C34) acetyltransferase compare
ECD_00374 -0.6 -0.8 phage Phi6 host factor, ATP/GTP binding protein compare
ECD_01489 -0.6 -1.3 transcriptional repressor of multiple antibiotic resistance compare
ECD_04362 -0.6 -1.2 hypothetical protein compare
ECD_03031 -0.6 -3.3 polynucleotide phosphorylase/polyadenylase compare
ECD_00406 -0.6 -1.8 excision repair protein, alkyltransferase-like protein ATL compare
ECD_03029 -0.6 -2.9 ATP-dependent RNA helicase compare
ECD_00843 -0.6 -1.2 phage baseplate assembly protein compare
ECD_03266 -0.6 -2.7 Fe/S biogenesis protein, putative scaffold/chaperone protein compare
ECD_03257 -0.6 -1.5 response regulator in two-component regulatory system with EnvZ compare
ECD_01019 -0.6 -1.5 putative membrane protein compare
ECD_00970 -0.6 -1.9 heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA-binding protein compare
ECD_02484 -0.6 -3.2 23S rRNA pseudouridine(1911,1915,1917) synthase compare
ECD_00333 -0.6 -3.0 pyrroline-5-carboxylate reductase, NAD(P)-binding compare
ECD_01744 -0.6 -1.3 putative MFS sugar transporter, membrane protein compare
ECD_02203 -0.6 -2.5 NADH:ubiquinone oxidoreductase, membrane subunit L compare
ECD_03238 -0.6 -1.9 D-ribulose-5-phosphate 3-epimerase compare
ECD_00054 -0.6 -1.1 protein associated with Co2+ and Mg2+ efflux compare
ECD_01409 -0.6 -1.5 ATP-binding protein, periplasmic, function unknown compare
ECD_02075 -0.6 -1.3 dihydropyrimidine dehydrogenase, NADH-dependent, subunit N compare
ECD_00322 -0.6 -1.0 putative transcriptional regulator compare
ECD_01124 -0.6 -1.3 spermidine/putrescine ABC transporter ATPase compare
ECD_01795 -0.6 -2.1 putative inner membrane protein compare
ECD_00794 -0.6 -1.8 molybdopterin molybdenumtransferase; molybdopterin biosynthesis protein compare
ECD_02724 -0.6 -3.9 ssDNA exonuclease, 5 compare
ECD_02251 -0.5 -2.0 Elongation Factor P Lys34 hydroxylase compare
ECD_00849 -0.5 -0.7 putative DNA-invertase compare
ECD_02899 -0.5 -1.0 inner membrane protein compare
ECD_01691 -0.5 -1.3 acid-inducible putative outer membrane protein compare
ECD_01059 -0.5 -1.6 lipoprotein, DUF1439 family compare
ECD_02212 -0.5 -2.8 NADH:ubiquinone oxidoreductase, chain B compare
ECD_02767 -0.5 -2.9 agmatinase compare
ECD_00388 -0.5 -2.7 proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases compare
ECD_02710 -0.5 -1.0 CTP:molybdopterin cytidylyltransferase compare
ECD_02172 -0.5 -1.6 putative L-rhamnonate transporter compare
ECD_01291 -0.5 -1.6 putative TIM alpha/beta barrel enzyme compare
ECD_04019 -0.5 -1.0 entericidin B membrane lipoprotein compare
ECD_01955 -0.5 -2.2 mannose-1-phosphate guanyltransferase compare
ECD_00863 -0.5 -1.6 DUF2593 family inner membrane protein compare
ECD_02507 -0.5 -0.8 toxic UPF0083 family protein inhibitor of 70S ribosome formation compare
ECD_02622 -0.5 -1.4 7-carboxy-7-deazaguanine synthase; queosine biosynthesis compare
ECD_02067 -0.5 -1.6 putative oxidoreductase compare
ECD_03096 -0.5 -0.8 malate dehydrogenase, NAD(P)-binding compare
ECD_00296 -0.5 -1.5 thiogalactoside acetyltransferase compare
ECD_02276 -0.5 -2.9 D-serine dehydratase compare
ECD_01584 -0.5 -1.4 putative outer membrane porin for beta-glucuronides porin protein compare
ECD_01894 -0.5 -1.7 AMP nucleosidase compare
ECD_04018 -0.5 -0.8 entericidin A membrane lipoprotein, antidote entericidin B compare
ECD_00997 -0.5 -1.4 periplasmic sensory protein associated with the TorRS two-component regulatory system compare
ECD_00230 -0.5 -1.1 hypothetical protein compare
ECD_01852 -0.5 -1.0 chemotaxis regulator, protein phosphatase for CheY compare
ECD_01703 -0.5 -1.6 phospho-chitobiase; general 6-phospho-beta-glucosidase activity compare
ECD_04309 -0.5 -1.2 uncharacterized protein compare
ECD_01873 -0.5 -1.8 ferritin iron storage protein (cytoplasmic) compare
ECD_01434 -0.5 -0.7 formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible compare
ECD_02321 -0.5 -1.4 cysteine synthase B (O-acetylserine sulfhydrolase B) compare
ECD_03046 -0.5 -2.1 transcript cleavage factor compare
ECD_03356 -0.5 -1.8 putative Mg(2+) transport ATPase, inner membrane protein compare
ECD_02254 -0.5 -1.0 chorismate synthase compare
ECD_01770 -0.5 -1.2 D-malate oxidase, NAD-dependent; putative tartrate dehydrogenase compare
ECD_02305 -0.5 -1.2 DUF1323 family putative DNA-binding protein compare
ECD_01621 -0.5 -1.0 glyoxalase I, Ni-dependent compare
ECD_02492 -0.5 -2.6 putative periplasmic inhibitor of YfiN activity compare
ECD_02286 -0.5 -0.7 putative lipoprotein involved in colanic acid biosynthesis compare
ECD_03352 -0.5 -1.8 arsenate reductase compare
ECD_01818 -0.5 -0.7 extracellular Colicin M immunity family protein compare
ECD_00337 -0.5 -2.2 AroM family protein compare
ECD_00984 -0.5 -1.9 tyrosine-protein kinase, role in O-antigen capsule formation compare
ECD_04043 -0.5 -1.4 DUF2065 family protein compare
ECD_00192 -0.5 -2.0 putative lipoprotein compare
ECD_02996 -0.5 -2.1 transcriptional repressor of the aga regulon compare
ECD_01309 -0.5 -1.9 DUF2534 family putative inner membrane protein compare
ECD_00438 -0.5 -0.8 copper-responsive regulon transcriptional regulator compare
ECD_02036 -0.5 -0.8 hypothetical protein compare
ECD_01487 -0.5 -1.9 phage N15 gp48-like protein compare
ECD_00771 -0.5 -1.9 Fe(II)-dependent oxygenase superfamily protein compare
ECD_01775 -0.5 -1.0 acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) compare
ECD_04250 -0.5 -3.1 peptide chain release factor RF-3 compare
ECD_00547 -0.5 -1.2 toxic polypeptide, small compare
ECD_01105 -0.5 -1.4 respiratory NADH dehydrogenase 2/cupric reductase compare
ECD_02726 -0.5 -1.6 site-specific tyrosine recombinase compare
ECD_02454 -0.5 -2.1 phosphatidylglycerophosphatase C, membrane bound compare
ECD_00538 -0.5 -2.2 mechanosensitive channel protein, miniconductance compare
ECD_04141 -0.5 -1.4 putative MFS transporter, membrane protein compare
ECD_03817 -0.5 -1.5 peptidase component of the HslUV protease compare
ECD_00808 -0.5 -1.4 undecaprenyl pyrophosphate phosphatase compare
ECD_02380 -0.5 -1.5 hydrogenase 4, Fe-S subunit compare
ECD_00004 -0.5 -1.8 L-threonine synthase compare
ECD_00205 -0.5 -2.1 hydroxyacylglutathione hydrolase compare
ECD_00006 -0.4 -2.4 peroxide resistance protein, lowers intracellular iron compare
ECD_01556 -0.4 -1.0 putative selenate reductase, periplasmic compare
ECD_04389 -0.4 -1.2 hypothetical protein compare
ECD_01045 -0.4 -0.9 OPG biosynthetic periplasmic beta-1,6 branching glycosyltransferase compare
ECD_04278 -0.4 -2.3 uncharacterized protein compare
ECD_03067 -0.4 -0.8 RNA polymerase, sigma 54 (sigma N) factor compare
ECD_01148 -0.4 -1.4 hypothetical protein compare
ECD_02207 -0.4 -1.3 NADH:ubiquinone oxidoreductase, membrane subunit H compare
ECD_02244 -0.4 -1.7 putative semialdehyde dehydrogenase compare
ECD_03571 -0.4 -0.6 DUF1375 family outer membrane protein compare
ECD_00967 -0.4 -1.2 methylglyoxal synthase compare
ECD_00818 -0.4 -0.9 hypothetical protein compare
ECD_00366 -0.4 -1.2 phosphatidylglycerophosphatase A compare
ECD_00592 -0.4 -1.1 phospholipid:lipid A palmitoyltransferase compare
ECD_00635 -0.4 -1.4 glucosamine-6-phosphate deaminase compare
ECD_03884 -0.4 -2.2 GNAT-family putative N-acetyltransferase; acetyl coenzyme A-binding protein compare
ECD_03097 -0.4 -1.7 l-arginine-responsive arginine metabolism regulon transcriptional regulator compare
ECD_03556 -0.4 -1.0 ilvB operon leader peptide compare
ECD_01811 -0.4 -1.9 inner membrane protein compare
ECD_04203 -0.4 -2.0 putative ATPase, activator of (R)-hydroxyglutaryl-CoA dehydratase compare
ECD_00203 -0.4 -2.1 putative S-adenosyl-L-methionine-dependent methyltransferase compare
ECD_02508 -0.4 -0.8 tmRNA-binding trans-translation protein compare


Specific Phenotypes

None in this experiment

For Escherichia coli BL21 in phage experiments

For phage MOI 10 across organisms