Experiment set6S154 for Erwinia tracheiphila SCR3

Compare to:

plant=Squash; plant sample=QP3; plant location=NA

200 most important genes:

  gene name fitness t score description  
LU632_RS04305 -4.3 -1.2 DNA primase compare
LU632_RS15690 gshA -3.8 -1.8 glutamate--cysteine ligase compare
LU632_RS13950 ychF -2.8 -1.9 redox-regulated ATPase YchF compare
LU632_RS24445 -2.5 -1.2 DUF413 domain-containing protein compare
LU632_RS16415 tatE -2.4 -0.9 twin-arginine translocase subunit TatE compare
LU632_RS21225 mlaB -2.2 -4.8 lipid asymmetry maintenance protein MlaB compare
LU632_RS25495 -2.2 -1.8 type II toxin-antitoxin system MqsA family antitoxin compare
LU632_RS01525 -2.0 -1.5 hypothetical protein compare
LU632_RS16115 sdhC -2.0 -5.9 succinate dehydrogenase cytochrome b556 subunit compare
LU632_RS02880 leuA -2.0 -11.4 2-isopropylmalate synthase compare
LU632_RS02465 -2.0 -0.9 IS256 family transposase compare
LU632_RS09915 ompC -2.0 -10.3 porin OmpC compare
LU632_RS15385 rnc -2.0 -1.3 ribonuclease III compare
LU632_RS22935 envZ -2.0 -8.3 two-component system sensor histidine kinase EnvZ compare
LU632_RS11790 -1.9 -1.3 DUF2313 domain-containing protein compare
LU632_RS06635 zipA -1.9 -2.9 cell division protein ZipA compare
LU632_RS16090 odhB -1.9 -1.2 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
LU632_RS21085 secG -1.9 -2.8 preprotein translocase subunit SecG compare
LU632_RS10625 -1.9 -1.3 N-acetylmuramoyl-L-alanine amidase compare
LU632_RS08820 -1.9 -7.4 lipopolysaccharide biosynthesis protein compare
LU632_RS02755 carA -1.8 -8.2 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
LU632_RS12500 pyrF -1.8 -6.1 orotidine-5'-phosphate decarboxylase compare
LU632_RS20270 -1.8 -0.8 IS5 family transposase compare
LU632_RS02750 carB -1.8 -10.8 carbamoyl-phosphate synthase large subunit compare
LU632_RS18995 proC -1.8 -2.7 pyrroline-5-carboxylate reductase compare
LU632_RS00435 sctF -1.8 -0.8 type III secretion system needle filament subunit SctF compare
LU632_RS20950 pyrB -1.7 -8.2 aspartate carbamoyltransferase compare
LU632_RS02815 -1.7 -1.2 transposase compare
LU632_RS16105 sdhA -1.7 -8.9 succinate dehydrogenase flavoprotein subunit compare
LU632_RS09955 pyrD -1.7 -7.6 quinone-dependent dihydroorotate dehydrogenase compare
LU632_RS04140 -1.7 -0.8 terminase family protein compare
LU632_RS19600 argH -1.7 -8.9 argininosuccinate lyase compare
LU632_RS10270 -1.7 -1.1 glucan biosynthesis protein G compare
LU632_RS02100 -1.7 -10.8 hemolysin family protein compare
LU632_RS24490 -1.7 -1.3 hypothetical protein compare
LU632_RS07865 purF -1.6 -11.1 amidophosphoribosyltransferase compare
LU632_RS11095 -1.6 -0.9 transposase zinc-binding domain-containing protein compare
LU632_RS17975 purL -1.6 -11.0 phosphoribosylformylglycinamidine synthase compare
LU632_RS13885 -1.6 -1.2 terminase large subunit compare
LU632_RS19610 argB -1.6 -3.2 acetylglutamate kinase compare
LU632_RS24885 pstC -1.6 -2.5 phosphate ABC transporter permease PstC compare
LU632_RS19605 -1.6 -4.3 argininosuccinate synthase compare
LU632_RS08785 -1.6 -6.1 glycosyltransferase family 2 protein compare
LU632_RS11825 -1.6 -1.0 hypothetical protein compare
LU632_RS12850 cls -1.6 -1.5 cardiolipin synthase compare
LU632_RS03495 -1.6 -3.0 phage regulatory CII family protein compare
LU632_RS16560 -1.6 -1.3 hypothetical protein compare
LU632_RS10340 pyrC -1.6 -5.7 dihydroorotase compare
LU632_RS22810 -1.6 -8.8 aspartate aminotransferase family protein compare
LU632_RS12905 hns -1.6 -0.8 DNA-binding transcriptional regulator H-NS compare
LU632_RS02870 leuC -1.6 -9.1 3-isopropylmalate dehydratase large subunit compare
LU632_RS24260 trxA -1.6 -2.9 thioredoxin TrxA compare
LU632_RS13730 -1.5 -3.4 FTR1 family protein compare
LU632_RS22940 ompR -1.5 -4.7 two-component system response regulator OmpR compare
LU632_RS09245 -1.5 -3.5 L,D-transpeptidase family protein compare
LU632_RS15640 -1.5 -1.5 helix-turn-helix domain-containing protein compare
LU632_RS24405 -1.5 -8.4 branched-chain amino acid transaminase compare
LU632_RS06210 argA -1.5 -6.6 amino-acid N-acetyltransferase compare
LU632_RS03335 -1.5 -2.4 ABC transporter ATP-binding protein compare
LU632_RS23220 -1.5 -0.9 VirK/YbjX family protein compare
LU632_RS12780 -1.5 -1.7 BON domain-containing protein compare
LU632_RS15245 purE -1.5 -1.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
LU632_RS08800 -1.5 -2.1 glycosyltransferase compare
LU632_RS21755 -1.5 -7.9 adenylosuccinate synthase compare
LU632_RS02875 leuB -1.5 -7.9 3-isopropylmalate dehydrogenase compare
LU632_RS08945 hisD -1.4 -5.5 histidinol dehydrogenase compare
LU632_RS06335 -1.4 -4.6 glycerate kinase compare
LU632_RS19275 ftsE -1.4 -4.5 cell division ATP-binding protein FtsE compare
LU632_RS25645 pilP -1.4 -2.0 type IV pilus biogenesis protein PilP compare
LU632_RS16110 sdhD -1.4 -5.0 succinate dehydrogenase membrane anchor subunit compare
LU632_RS00655 -1.4 -1.3 DotU family type IV/VI secretion system protein compare
LU632_RS08770 -1.4 -6.3 polysaccharide export protein compare
LU632_RS07775 aroC -1.4 -3.1 chorismate synthase compare
LU632_RS07650 -1.4 -2.4 hypothetical protein compare
LU632_RS25030 -1.4 -1.0 hypothetical protein compare
LU632_RS08335 -1.4 -1.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LU632_RS08920 hisF -1.4 -5.4 imidazole glycerol phosphate synthase subunit HisF compare
LU632_RS05025 -1.4 -0.7 TIGR03749 family integrating conjugative element protein compare
LU632_RS08775 -1.4 -4.9 protein tyrosine phosphatase compare
LU632_RS08815 -1.4 -2.5 colanic acid biosynthesis glycosyltransferase WcaL compare
LU632_RS02610 thrA -1.4 -5.4 bifunctional aspartate kinase/homoserine dehydrogenase I compare
LU632_RS22135 glnG -1.3 -4.0 nitrogen regulation protein NR(I) compare
LU632_RS04390 -1.3 -1.0 N-acetylmuramoyl-L-alanine amidase compare
LU632_RS19270 ftsX -1.3 -8.4 permease-like cell division protein FtsX compare
LU632_RS08275 purM -1.3 -5.4 phosphoribosylformylglycinamidine cyclo-ligase compare
LU632_RS01160 gpt -1.3 -1.4 xanthine phosphoribosyltransferase compare
LU632_RS09695 -1.3 -1.2 cold shock domain-containing protein compare
LU632_RS08790 -1.3 -4.4 EpsG family protein compare
LU632_RS08830 galE -1.3 -6.4 UDP-glucose 4-epimerase GalE compare
LU632_RS03310 -1.3 -8.6 sucrose-6-phosphate hydrolase compare
LU632_RS19980 glnD -1.3 -2.0 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
LU632_RS22150 typA -1.3 -2.1 ribosome-dependent GTPase TypA compare
LU632_RS20900 argF -1.3 -6.5 ornithine carbamoyltransferase compare
LU632_RS10860 -1.3 -2.0 metal-dependent hydrolase compare
LU632_RS22960 feoA -1.3 -0.7 ferrous iron transporter A compare
LU632_RS24845 -1.3 -0.9 hypothetical protein compare
LU632_RS05510 speA -1.3 -1.1 biosynthetic arginine decarboxylase compare
LU632_RS03225 sctL -1.3 -2.9 type III secretion system stator protein SctL compare
LU632_RS01020 purH -1.3 -4.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LU632_RS17650 -1.3 -1.4 hypothetical protein compare
LU632_RS24385 ilvC -1.3 -5.5 ketol-acid reductoisomerase compare
LU632_RS03950 -1.3 -4.7 hypothetical protein compare
LU632_RS06615 ptsI -1.3 -7.6 phosphoenolpyruvate-protein phosphotransferase PtsI compare
LU632_RS18005 -1.3 -3.9 O-antigen ligase family protein compare
LU632_RS08915 hisIE -1.2 -3.3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
LU632_RS12705 -1.2 -2.2 IS630 family transposase compare
LU632_RS24400 ilvD -1.2 -7.2 dihydroxy-acid dehydratase compare
LU632_RS19665 ftsN -1.2 -2.4 cell division protein FtsN compare
LU632_RS11560 pspA -1.2 -1.5 phage shock protein PspA compare
LU632_RS05855 serA -1.2 -4.9 phosphoglycerate dehydrogenase compare
LU632_RS24675 -1.2 -0.7 winged helix-turn-helix domain-containing protein compare
LU632_RS09475 mntR -1.2 -2.3 manganese-binding transcriptional regulator MntR compare
LU632_RS02865 leuD -1.2 -4.6 3-isopropylmalate dehydratase small subunit compare
LU632_RS24890 pstA -1.2 -1.6 phosphate ABC transporter permease PstA compare
LU632_RS04065 -1.2 -1.7 AlpA family phage regulatory protein compare
LU632_RS12910 -1.2 -1.1 NAD-dependent epimerase compare
LU632_RS08930 hisH -1.2 -4.9 imidazole glycerol phosphate synthase subunit HisH compare
LU632_RS21235 mlaD -1.2 -3.8 outer membrane lipid asymmetry maintenance protein MlaD compare
LU632_RS16285 -1.2 -0.9 tRNA-Met compare
LU632_RS19745 -1.2 -2.0 glutathione S-transferase N-terminal domain-containing protein compare
LU632_RS00495 sctS -1.2 -0.7 type III secretion system export apparatus subunit SctS compare
LU632_RS21245 mlaF -1.2 -4.2 phospholipid ABC transporter ATP-binding protein MlaF compare
LU632_RS14960 -1.2 -1.2 FAD-binding oxidoreductase compare
LU632_RS15860 istB -1.2 -1.2 IS21-like element helper ATPase IstB compare
LU632_RS14710 -1.2 -1.3 antitermination protein compare
LU632_RS01015 purD -1.2 -4.3 phosphoribosylamine--glycine ligase compare
LU632_RS09795 aroA -1.2 -5.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
LU632_RS05515 speB -1.2 -1.1 agmatinase compare
LU632_RS02730 rsmA -1.2 -1.8 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
LU632_RS09745 -1.2 -1.0 DNA translocase FtsK 4TM domain-containing protein compare
LU632_RS08940 hisC -1.1 -6.7 histidinol-phosphate transaminase compare
LU632_RS22980 -1.1 -1.9 phosphoribosyltransferase compare
LU632_RS08780 wzc -1.1 -7.3 tyrosine-protein kinase Wzc compare
LU632_RS23695 -1.1 -1.3 MmcQ/YjbR family DNA-binding protein compare
LU632_RS18060 -1.1 -4.3 hypothetical protein compare
LU632_RS22140 glnL -1.1 -5.1 nitrogen regulation protein NR(II) compare
LU632_RS19495 gorA -1.1 -1.5 glutathione-disulfide reductase compare
LU632_RS24450 hdfR -1.1 -2.6 HTH-type transcriptional regulator HdfR compare
LU632_RS23980 tatC -1.1 -4.6 Sec-independent protein translocase subunit TatC compare
LU632_RS20960 ridA -1.1 -1.4 2-iminobutanoate/2-iminopropanoate deaminase compare
LU632_RS17265 -1.1 -1.6 hypothetical protein compare
LU632_RS18555 -1.1 -1.2 hypothetical protein compare
LU632_RS07950 yfbR -1.1 -3.4 5'-deoxynucleotidase compare
LU632_RS22945 -1.1 -0.8 hypothetical protein compare
LU632_RS06040 lysA -1.1 -4.8 diaminopimelate decarboxylase compare
LU632_RS16120 -1.1 -7.0 citrate synthase compare
LU632_RS15250 purK -1.1 -3.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
LU632_RS22015 pyrE -1.1 -2.9 orotate phosphoribosyltransferase compare
LU632_RS06860 -1.1 -2.4 hypothetical protein compare
LU632_RS24435 -1.1 -2.2 DDE-type integrase/transposase/recombinase compare
LU632_RS05985 recJ -1.1 -2.7 single-stranded-DNA-specific exonuclease RecJ compare
LU632_RS01430 -1.1 -1.1 hypothetical protein compare
LU632_RS19615 argC -1.1 -4.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
LU632_RS08935 hisB -1.1 -5.3 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
LU632_RS05960 sdhE -1.1 -2.6 FAD assembly factor SdhE compare
LU632_RS05130 -1.0 -0.8 TIGR03750 family conjugal transfer protein compare
LU632_RS02050 miaA -1.0 -1.6 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LU632_RS15415 rseB -1.0 -2.5 sigma-E factor regulatory protein RseB compare
LU632_RS07300 mlaA -1.0 -4.2 phospholipid-binding lipoprotein MlaA compare
LU632_RS14145 -1.0 -1.3 integrase core domain-containing protein compare
LU632_RS19620 argE -1.0 -3.9 acetylornithine deacetylase compare
LU632_RS03140 sctS -1.0 -2.0 type III secretion system export apparatus subunit SctS compare
LU632_RS02070 hflC -1.0 -2.1 protease modulator HflC compare
LU632_RS22020 rph -1.0 -3.3 ribonuclease PH compare
LU632_RS24420 -1.0 -1.1 IlvGEDA operon leader peptide compare
LU632_RS23625 -1.0 -1.2 IS91 family transposase compare
LU632_RS23215 -1.0 -0.6 VirK/YbjX family protein compare
LU632_RS26110 -1.0 -3.2 ParA family protein compare
LU632_RS13455 cmoA -1.0 -1.7 carboxy-S-adenosyl-L-methionine synthase CmoA compare
LU632_RS01610 -1.0 -1.0 tail protein X compare
LU632_RS18955 rdgC -1.0 -2.8 recombination-associated protein RdgC compare
LU632_RS14895 -1.0 -2.1 integrase arm-type DNA-binding domain-containing protein compare
LU632_RS08850 rfbB -1.0 -1.4 dTDP-glucose 4,6-dehydratase compare
LU632_RS02615 thrB -1.0 -3.0 homoserine kinase compare
LU632_RS19570 -1.0 -3.4 transcriptional regulator compare
LU632_RS02545 serB -0.9 -1.1 phosphoserine phosphatase compare
LU632_RS18045 -0.9 -0.8 hypothetical protein compare
LU632_RS05935 -0.9 -1.9 PTS transporter subunit EIIB compare
LU632_RS08885 -0.9 -2.0 ABC transporter ATP-binding protein compare
LU632_RS01995 -0.9 -1.1 type VI secretion system tube protein Hcp compare
LU632_RS01530 -0.9 -1.9 hypothetical protein compare
LU632_RS07215 -0.9 -2.4 antitermination protein Q compare
LU632_RS07045 -0.9 -0.8 hypothetical protein compare
LU632_RS04565 -0.9 -2.0 restriction endonuclease compare
LU632_RS04255 -0.9 -2.3 YhcH/YjgK/YiaL family protein compare
LU632_RS15405 -0.9 -1.5 IS6 family transposase compare
LU632_RS18420 -0.9 -0.7 LysE family translocator compare
LU632_RS16855 -0.9 -1.0 helix-turn-helix domain-containing protein compare
LU632_RS25820 -0.9 -0.9 hypothetical protein compare
LU632_RS18100 htpG -0.9 -3.0 molecular chaperone HtpG compare
LU632_RS01590 -0.9 -3.1 GPO family capsid scaffolding protein compare
LU632_RS21230 mlaC -0.9 -2.9 phospholipid-binding protein MlaC compare
LU632_RS16250 nagA -0.9 -3.9 N-acetylglucosamine-6-phosphate deacetylase compare
LU632_RS10330 dinI -0.9 -2.7 DNA damage-inducible protein I compare
LU632_RS07440 -0.9 -2.0 hypothetical protein compare
LU632_RS06100 -0.9 -0.5 hypothetical protein compare
LU632_RS08260 ppk1 -0.9 -4.4 polyphosphate kinase 1 compare
LU632_RS23725 -0.9 -1.3 hypothetical protein compare
LU632_RS20930 -0.9 -0.8 hypothetical protein compare
LU632_RS16990 bamE -0.9 -1.0 outer membrane protein assembly factor BamE compare


Specific Phenotypes

None in this experiment

For Erwinia tracheiphila SCR3 in in planta experiments

For in planta plant=Squash; plant sample=QP3; plant location=NA across organisms