Experiment set6S152 for Erwinia tracheiphila SCR3

Compare to:

plant=Squash; plant sample=QP1; plant location=NA

200 most important genes:

  gene name fitness t score description  
LU632_RS15245 purE -5.9 -2.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
LU632_RS09955 pyrD -5.0 -4.8 quinone-dependent dihydroorotate dehydrogenase compare
LU632_RS01015 purD -4.1 -4.0 phosphoribosylamine--glycine ligase compare
LU632_RS16130 -4.0 -0.9 helix-turn-helix domain-containing protein compare
LU632_RS06635 zipA -3.8 -1.9 cell division protein ZipA compare
LU632_RS08275 purM -3.7 -4.4 phosphoribosylformylglycinamidine cyclo-ligase compare
LU632_RS08815 -3.7 -3.3 colanic acid biosynthesis glycosyltransferase WcaL compare
LU632_RS02880 leuA -3.7 -12.4 2-isopropylmalate synthase compare
LU632_RS10340 pyrC -3.6 -4.3 dihydroorotase compare
LU632_RS09915 ompC -3.6 -8.7 porin OmpC compare
LU632_RS09195 moaE -3.6 -0.8 molybdopterin synthase catalytic subunit MoaE compare
LU632_RS17975 purL -3.6 -13.4 phosphoribosylformylglycinamidine synthase compare
LU632_RS21240 mlaE -3.6 -2.5 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
LU632_RS24405 -3.6 -10.8 branched-chain amino acid transaminase compare
LU632_RS06335 -3.6 -7.7 glycerate kinase compare
LU632_RS02750 carB -3.6 -9.4 carbamoyl-phosphate synthase large subunit compare
LU632_RS08785 -3.5 -7.8 glycosyltransferase family 2 protein compare
LU632_RS24270 gppA -3.5 -1.6 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
LU632_RS02870 leuC -3.5 -12.5 3-isopropylmalate dehydratase large subunit compare
LU632_RS21755 -3.5 -12.1 adenylosuccinate synthase compare
LU632_RS12500 pyrF -3.5 -5.3 orotidine-5'-phosphate decarboxylase compare
LU632_RS07865 purF -3.5 -15.3 amidophosphoribosyltransferase compare
LU632_RS22140 glnL -3.4 -9.5 nitrogen regulation protein NR(II) compare
LU632_RS08820 -3.4 -6.1 lipopolysaccharide biosynthesis protein compare
LU632_RS20900 argF -3.3 -11.2 ornithine carbamoyltransferase compare
LU632_RS02875 leuB -3.3 -9.6 3-isopropylmalate dehydrogenase compare
LU632_RS19600 argH -3.3 -10.8 argininosuccinate lyase compare
LU632_RS02100 -3.2 -14.0 hemolysin family protein compare
LU632_RS16115 sdhC -3.2 -5.5 succinate dehydrogenase cytochrome b556 subunit compare
LU632_RS08335 -3.2 -1.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LU632_RS23980 tatC -3.1 -8.9 Sec-independent protein translocase subunit TatC compare
LU632_RS20950 pyrB -3.1 -7.2 aspartate carbamoyltransferase compare
LU632_RS12115 -3.1 -2.4 hypothetical protein compare
LU632_RS02615 thrB -3.1 -2.1 homoserine kinase compare
LU632_RS02865 leuD -3.1 -5.5 3-isopropylmalate dehydratase small subunit compare
LU632_RS08885 -3.1 -3.7 ABC transporter ATP-binding protein compare
LU632_RS26120 -3.0 -2.3 WGR domain-containing protein compare
LU632_RS22015 pyrE -3.0 -2.9 orotate phosphoribosyltransferase compare
LU632_RS08770 -3.0 -8.0 polysaccharide export protein compare
LU632_RS08790 -2.9 -7.6 EpsG family protein compare
LU632_RS02755 carA -2.9 -8.4 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
LU632_RS21225 mlaB -2.8 -4.2 lipid asymmetry maintenance protein MlaB compare
LU632_RS22810 -2.8 -10.0 aspartate aminotransferase family protein compare
LU632_RS06985 -2.8 -0.9 hypothetical protein compare
LU632_RS08915 hisIE -2.8 -5.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
LU632_RS22135 glnG -2.8 -6.5 nitrogen regulation protein NR(I) compare
LU632_RS24155 -2.8 -1.3 class I adenylate cyclase compare
LU632_RS24400 ilvD -2.8 -10.5 dihydroxy-acid dehydratase compare
LU632_RS15445 tyrA -2.7 -12.0 bifunctional chorismate mutase/prephenate dehydrogenase compare
LU632_RS08880 -2.7 -1.9 ABC transporter permease compare
LU632_RS06615 ptsI -2.7 -11.8 phosphoenolpyruvate-protein phosphotransferase PtsI compare
LU632_RS18995 proC -2.7 -1.5 pyrroline-5-carboxylate reductase compare
LU632_RS08780 wzc -2.6 -12.4 tyrosine-protein kinase Wzc compare
LU632_RS18005 -2.6 -6.5 O-antigen ligase family protein compare
LU632_RS08775 -2.5 -5.3 protein tyrosine phosphatase compare
LU632_RS25495 -2.5 -1.4 type II toxin-antitoxin system MqsA family antitoxin compare
LU632_RS01020 purH -2.5 -2.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LU632_RS01085 -2.5 -2.2 class I SAM-dependent methyltransferase compare
LU632_RS15425 rpoE -2.5 -10.4 RNA polymerase sigma factor RpoE compare
LU632_RS16105 sdhA -2.5 -8.6 succinate dehydrogenase flavoprotein subunit compare
LU632_RS21245 mlaF -2.4 -6.6 phospholipid ABC transporter ATP-binding protein MlaF compare
LU632_RS22935 envZ -2.4 -8.1 two-component system sensor histidine kinase EnvZ compare
LU632_RS19615 argC -2.4 -7.0 N-acetyl-gamma-glutamyl-phosphate reductase compare
LU632_RS18420 -2.4 -0.8 LysE family translocator compare
LU632_RS03735 -2.4 -2.3 DUF1435 domain-containing protein compare
LU632_RS01320 crcB -2.4 -2.1 fluoride efflux transporter CrcB compare
LU632_RS08920 hisF -2.4 -5.6 imidazole glycerol phosphate synthase subunit HisF compare
LU632_RS19270 ftsX -2.4 -12.3 permease-like cell division protein FtsX compare
LU632_RS09245 -2.4 -4.7 L,D-transpeptidase family protein compare
LU632_RS07775 aroC -2.4 -3.1 chorismate synthase compare
LU632_RS25000 -2.4 -1.8 DUF3164 family protein compare
LU632_RS08800 -2.3 -1.9 glycosyltransferase compare
LU632_RS08935 hisB -2.3 -8.9 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
LU632_RS16100 -2.3 -3.2 succinate dehydrogenase iron-sulfur subunit compare
LU632_RS21235 mlaD -2.3 -6.4 outer membrane lipid asymmetry maintenance protein MlaD compare
LU632_RS21700 fklB -2.3 -1.2 peptidylprolyl isomerase compare
LU632_RS16110 sdhD -2.3 -5.8 succinate dehydrogenase membrane anchor subunit compare
LU632_RS00535 -2.3 -2.8 acyl carrier protein compare
LU632_RS01090 rnhA -2.2 -1.0 ribonuclease HI compare
LU632_RS23215 -2.2 -0.7 VirK/YbjX family protein compare
LU632_RS06210 argA -2.2 -8.2 amino-acid N-acetyltransferase compare
LU632_RS22960 feoA -2.2 -0.7 ferrous iron transporter A compare
LU632_RS04250 yiaK -2.1 -4.2 3-dehydro-L-gulonate 2-dehydrogenase compare
LU632_RS25465 -2.1 -1.8 hypothetical protein compare
LU632_RS10625 -2.1 -1.6 N-acetylmuramoyl-L-alanine amidase compare
LU632_RS01185 proB -2.1 -7.6 glutamate 5-kinase compare
LU632_RS09475 mntR -2.1 -2.4 manganese-binding transcriptional regulator MntR compare
LU632_RS08930 hisH -2.1 -8.0 imidazole glycerol phosphate synthase subunit HisH compare
LU632_RS06040 lysA -2.1 -6.2 diaminopimelate decarboxylase compare
LU632_RS02815 -2.1 -1.6 transposase compare
LU632_RS19275 ftsE -2.1 -4.9 cell division ATP-binding protein FtsE compare
LU632_RS03310 -2.1 -8.8 sucrose-6-phosphate hydrolase compare
LU632_RS11355 -2.1 -0.8 hypothetical protein compare
LU632_RS09010 -2.1 -2.1 DnaJ domain-containing protein compare
LU632_RS19610 argB -2.1 -3.9 acetylglutamate kinase compare
LU632_RS21940 -2.1 -3.2 glycosyltransferase compare
LU632_RS05855 serA -2.0 -7.1 phosphoglycerate dehydrogenase compare
LU632_RS23195 -2.0 -1.5 amidohydrolase compare
LU632_RS19620 argE -2.0 -5.1 acetylornithine deacetylase compare
LU632_RS00135 -2.0 -0.6 YibL family ribosome-associated protein compare
LU632_RS04710 -2.0 -0.8 IS110 family transposase compare
LU632_RS19605 -2.0 -5.3 argininosuccinate synthase compare
LU632_RS01190 proA -2.0 -5.9 glutamate-5-semialdehyde dehydrogenase compare
LU632_RS22940 ompR -2.0 -3.6 two-component system response regulator OmpR compare
LU632_RS21230 mlaC -2.0 -4.1 phospholipid-binding protein MlaC compare
LU632_RS06955 -1.9 -1.7 hypothetical protein compare
LU632_RS09795 aroA -1.9 -5.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
LU632_RS08940 hisC -1.9 -7.4 histidinol-phosphate transaminase compare
LU632_RS23360 -1.9 -2.9 Sua5/YciO/YrdC/YwlC family protein compare
LU632_RS10660 -1.9 -1.0 hypothetical protein compare
LU632_RS08830 galE -1.9 -5.9 UDP-glucose 4-epimerase GalE compare
LU632_RS18120 -1.9 -2.8 hypothetical protein compare
LU632_RS02610 thrA -1.9 -5.5 bifunctional aspartate kinase/homoserine dehydrogenase I compare
LU632_RS17645 -1.9 -0.9 hypothetical protein compare
LU632_RS14860 rne -1.9 -1.0 ribonuclease E compare
LU632_RS17830 -1.9 -1.5 MgtC/SapB family protein compare
LU632_RS17500 -1.9 -1.7 pyocin activator PrtN family protein compare
LU632_RS14895 -1.8 -2.3 integrase arm-type DNA-binding domain-containing protein compare
LU632_RS08500 -1.8 -0.8 transposase compare
LU632_RS17785 bamB -1.8 -3.3 outer membrane protein assembly factor BamB compare
LU632_RS15415 rseB -1.8 -1.8 sigma-E factor regulatory protein RseB compare
LU632_RS22410 metA -1.8 -7.9 homoserine O-succinyltransferase compare
LU632_RS00070 -1.8 -1.9 hypothetical protein compare
LU632_RS08850 rfbB -1.8 -1.7 dTDP-glucose 4,6-dehydratase compare
LU632_RS12350 -1.8 -0.7 adenosine deaminase compare
LU632_RS16835 mprA -1.8 -4.3 transcriptional repressor MprA compare
LU632_RS02140 -1.8 -1.8 ribosome-associated protein compare
LU632_RS08035 -1.8 -7.2 glucan biosynthesis protein D compare
LU632_RS06465 surE -1.8 -1.0 5'/3'-nucleotidase SurE compare
LU632_RS20995 -1.8 -2.6 N-acetyltransferase compare
LU632_RS04295 -1.8 -2.7 IS91 family transposase compare
LU632_RS05960 sdhE -1.8 -2.5 FAD assembly factor SdhE compare
LU632_RS16665 -1.8 -0.8 hypothetical protein compare
LU632_RS03440 -1.8 -1.4 single-stranded DNA-binding protein compare
LU632_RS18295 -1.8 -0.7 ISNCY family transposase compare
LU632_RS20495 -1.7 -3.2 hypothetical protein compare
LU632_RS12325 -1.7 -2.0 H-NS histone family protein compare
LU632_RS14775 hinT -1.7 -1.8 purine nucleoside phosphoramidase compare
LU632_RS03245 -1.7 -2.7 hypothetical protein compare
LU632_RS19640 metB -1.7 -5.4 cystathionine gamma-synthase compare
LU632_RS06330 garR -1.7 -3.3 2-hydroxy-3-oxopropionate reductase compare
LU632_RS17140 -1.7 -1.4 hypothetical protein compare
LU632_RS09085 pgl -1.7 -1.4 6-phosphogluconolactonase compare
LU632_RS13675 -1.7 -1.1 tRNA-Ser compare
LU632_RS14570 -1.7 -1.4 NUDIX hydrolase compare
LU632_RS05410 mltC -1.7 -8.2 membrane-bound lytic murein transglycosylase MltC compare
LU632_RS24385 ilvC -1.7 -4.7 ketol-acid reductoisomerase compare
LU632_RS24260 trxA -1.7 -2.4 thioredoxin TrxA compare
LU632_RS23505 -1.7 -0.5 IS256 family transposase compare
LU632_RS16480 -1.7 -3.4 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
LU632_RS07300 mlaA -1.7 -4.7 phospholipid-binding lipoprotein MlaA compare
LU632_RS19395 -1.6 -1.3 DHCW motif cupin fold protein compare
LU632_RS14710 -1.6 -1.2 antitermination protein compare
LU632_RS22285 -1.6 -0.7 recombinase family protein compare
LU632_RS15405 -1.6 -1.6 IS6 family transposase compare
LU632_RS02280 -1.6 -1.4 YqjK-like family protein compare
LU632_RS14150 -1.6 -1.4 hypothetical protein compare
LU632_RS16090 odhB -1.6 -0.8 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
LU632_RS24845 -1.6 -0.8 hypothetical protein compare
LU632_RS12925 rssB -1.6 -1.1 two-component system response regulator RssB compare
LU632_RS17370 -1.6 -0.7 hypothetical protein compare
LU632_RS20960 ridA -1.6 -2.2 2-iminobutanoate/2-iminopropanoate deaminase compare
LU632_RS02210 yraP -1.6 -3.9 divisome-associated lipoprotein YraP compare
LU632_RS05320 -1.6 -0.7 hypothetical protein compare
LU632_RS21085 secG -1.6 -1.6 preprotein translocase subunit SecG compare
LU632_RS21875 gpsA -1.6 -8.3 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
LU632_RS19980 glnD -1.6 -1.5 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
LU632_RS02910 rsmH -1.6 -5.2 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
LU632_RS21895 envC -1.6 -6.4 murein hydrolase activator EnvC compare
LU632_RS05950 -1.5 -3.5 hemolysin III family protein compare
LU632_RS19360 -1.5 -0.9 hypothetical protein compare
LU632_RS00695 -1.5 -0.6 fimbria/pilus periplasmic chaperone compare
LU632_RS24890 pstA -1.5 -1.4 phosphate ABC transporter permease PstA compare
LU632_RS05275 -1.5 -1.4 ATP-binding protein compare
LU632_RS02065 hflK -1.5 -2.1 FtsH protease activity modulator HflK compare
LU632_RS24230 rffC -1.5 -3.1 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
LU632_RS08805 -1.5 -7.2 phage tailspike protein compare
LU632_RS07955 -1.5 -6.9 pyridoxal phosphate-dependent aminotransferase compare
LU632_RS19665 ftsN -1.5 -2.2 cell division protein FtsN compare
LU632_RS24250 wecA -1.5 -7.8 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
LU632_RS08950 hisG -1.5 -5.3 ATP phosphoribosyltransferase compare
LU632_RS15860 istB -1.5 -1.6 IS21-like element helper ATPase IstB compare
LU632_RS08970 -1.4 -2.1 ATP-binding cassette domain-containing protein compare
LU632_RS12800 -1.4 -2.8 envelope biogenesis factor ElyC compare
LU632_RS20260 -1.4 -0.7 DUF4113 domain-containing protein compare
LU632_RS15250 purK -1.4 -3.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
LU632_RS24035 metR -1.4 -3.9 HTH-type transcriptional regulator MetR compare
LU632_RS04180 -1.4 -2.0 hypothetical protein compare
LU632_RS02070 hflC -1.4 -1.7 protease modulator HflC compare
LU632_RS19775 -1.4 -7.9 amino acid ABC transporter permease compare
LU632_RS15800 -1.4 -1.6 hypothetical protein compare
LU632_RS17265 -1.4 -1.6 hypothetical protein compare
LU632_RS12850 cls -1.4 -1.3 cardiolipin synthase compare
LU632_RS03210 -1.4 -1.4 EscI/YscI/HrpB family type III secretion system inner rod protein compare
LU632_RS23985 tatB -1.4 -2.6 Sec-independent protein translocase protein TatB compare
LU632_RS21705 -1.4 -2.5 Opacity-associated protein A compare
LU632_RS01265 -1.4 -1.8 hypothetical protein compare
LU632_RS21000 -1.4 -4.0 SCP2 domain-containing protein compare
LU632_RS25485 -1.4 -1.5 hypothetical protein compare
LU632_RS07155 -1.4 -3.7 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Erwinia tracheiphila SCR3 in in planta experiments

For in planta plant=Squash; plant sample=QP1; plant location=NA across organisms