Experiment set6S143 for Escherichia coli BL21

Compare to:

Bas69

200 most detrimental genes:

  gene name fitness t score description  
ECD_03121 +1.6 1.8 putative membrane protein compare
ECD_02042 +1.4 1.7 DUF2574 family protein compare
ECD_03541 +1.2 2.4 hypothetical protein compare
ECD_01928 +1.1 1.5 phosphoribosyl-AMP cyclohydrolase and phosphoribosyl-ATP pyrophosphatase compare
ECD_02162 +1.1 2.0 ferredoxin involved with ribonucleotide reductase diferric-tyrosyl radical (Y*) cofactor maintenance compare
ECD_00872 +1.0 3.4 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent; OM lipoprotein compare
ECD_02107 +1.0 3.2 microcin C ABC transporter periplasmic binding protein compare
ECD_00492 +1.0 1.5 hypothetical protein compare
ECD_03798 +1.0 2.2 response regulator in two-component regulatory system with CpxA compare
ECD_01403 +1.0 2.3 DUF2526 family protein compare
ECD_01104 +1.0 1.7 putative UPF0227 family esterase compare
ECD_00274 +1.0 2.4 ankyrin repeat protein compare
ECD_01879 +1.0 1.2 response regulator in two-component regulatory system with BarA compare
ECD_01167 +0.9 1.7 murein tetrapeptide carboxypeptidase; LD-carboxypeptidase A compare
ECD_01859 +0.9 2.9 fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein compare
ECD_02671 +0.9 2.1 putative prepilin peptidase-dependent protein compare
ECD_04373 +0.9 3.1 UV-inducible membrane toxin, DinQ-AgrB type I toxin-antitoxin system compare
ECD_02473 +0.8 2.0 autonomous glycyl radical cofactor compare
ECD_01624 +0.8 1.7 glutaredoxin-4 compare
ECD_00807 +0.8 1.5 deoxyribose-5-phosphate-inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx compare
ECD_03877 +0.8 3.2 HU, DNA-binding transcriptional regulator, alpha subunit compare
ECD_01565 +0.8 0.8 putative arabinose efflux transporter compare
ECD_00941 +0.8 1.6 NAD(P)H-dependent FMN reductase compare
ECD_01486 +0.8 1.5 UPF0056 family inner membrane protein compare
ECD_03695 +0.8 1.2 Magnesium and cobalt transport protein corA compare
ECD_00450 +0.8 0.9 conserved protein, rhs-like protein compare
ECD_02349 +0.8 2.4 phosphate acetyltransferase compare
ECD_00682 +0.8 2.3 succinate dehydrogenase, membrane subunit, binds cytochrome b556 compare
ECD_00985 +0.8 1.8 O-antigen capsule forming protein-tyrosine-phosphatase; Etk-P dephosphorylase compare
ECD_00831 +0.8 2.1 retron EC86 RNA-directed DNA polymerase-like protein compare
ECD_01926 +0.8 2.0 N-(5'-phospho-L-ribosyl-formimino)-5-amino-1- (5'-phosphoribosyl)-4-imidazolecarboxamide isomerase compare
ECD_01320 +0.8 1.7 ATP-dependent RNA helicase, specific for 23S rRNA compare
ECD_01820 +0.7 1.9 phosphoribosylglycinamide formyltransferase 2 compare
ECD_00255 +0.7 2.4 50S ribosomal protein L31 type B; alternative zinc-limitation L31 protein compare
ECD_03729 +0.7 1.7 TatABCE protein translocation system subunit compare
ECD_04119 +0.7 1.1 SopA-central-domain-like hexapeptide repeat protein compare
ECD_01043 +0.7 2.5 stationary phase cardiolipin synthase 3 compare
ECD_00830 +0.7 2.3 hypothetical protein compare
ECD_00026 +0.7 2.9 hypothetical protein compare
ECD_02694 +0.7 1.1 putative LuxR family transcriptional regulator compare
ECD_02056 +0.7 2.0 transcriptional activator of csgD and csgBA compare
ECD_03308 +0.7 1.2 PanD autocleavage accelerator, panothenate synthesis compare
ECD_02189 +0.7 1.6 dihydroxynaphthoic acid synthetase compare
ECD_04308 +0.7 1.9 uncharacterized protein compare
ECD_01716 +0.7 1.7 arginine succinyltransferase compare
ECD_01586 +0.7 1.2 beta-D-glucuronidase compare
ECD_01694 +0.7 1.5 fructosamine kinase family protein compare
ECD_04212 +0.7 0.8 5-methylcytosine-specific restriction enzyme McrBC, subunit McrB compare
ECD_02100 +0.7 1.6 UPF0153 cysteine cluster protein compare
ECD_01404 +0.7 1.4 DUF606 family inner membrane protein compare
ECD_01375 +0.7 0.9 putative periplasmic protein compare
ECD_03837 +0.7 2.0 putative [formate-C-acetyltransferase 2]-activating enzyme; pyruvate formate-lyase 1-activating enzyme compare
ECD_02920 +0.7 1.7 DUF1449 family inner membrane protein compare
ECD_00441 +0.7 2.0 iron export ABC transporter ATPase; peroxide resistance protein compare
ECD_02915 +0.7 1.2 putative fimbrial-like adhesin protein compare
ECD_02256 +0.6 2.0 putative DNA endonuclease compare
ECD_00695 +0.6 1.4 putative inner membrane protein in cydABX-ybgE operon compare
ECD_01844 +0.6 2.0 TMAO reductase III (TorYZ), cytochrome c-type subunit compare
ECD_01912 +0.6 1.3 DNA gyrase inhibitor compare
ECD_02998 +0.6 1.9 N-acetylgalactosamine-specific enzyme IIB component of PTS compare
ECD_00617 +0.6 2.3 ribonucleoside hydrolase 1 compare
ECD_02113 +0.6 2.1 16S rRNA pseudouridine(516) synthase compare
ECD_01897 +0.6 0.9 ssuEADCB/tauABCD operon transcriptional activator compare
ECD_02163 +0.6 0.9 acid-inducible Kdo/WaaP family putative kinase compare
ECD_00535 +0.6 2.2 copper/silver efflux system, membrane fusion protein compare
ECD_04251 +0.6 2.2 salt-inducible putative ABC transporter periplasmic binding protein compare
ECD_03005 +0.6 1.2 N-acetylgalactosamine-specific enzyme IIB component of PTS compare
ECD_01443 +0.6 1.3 D,D-dipeptide ABC transporter permease compare
ECD_02398 +0.6 1.2 nalidixic acid resistance protein, putative periplasmic protein compare
ECD_01828 +0.6 1.0 zinc ABC transporter periplasmic binding protein compare
ECD_03645 +0.6 1.3 ilvG operon leader peptide compare
ECD_02280 +0.6 1.1 hybrid sensory histidine kinase in two-component regulatory system with EvgA compare
ECD_01561 +0.6 0.9 H(+)/Cl(-) exchange transporter compare
ECD_00585 +0.6 1.4 citrate lyase, acyl carrier (gamma) subunit compare
ECD_02901 +0.6 1.6 quinol monooxygenase compare
ECD_00513 +0.6 1.8 hypothetical protein compare
ECD_02324 +0.6 1.8 sulfate/thiosulfate ABC transporter permease compare
ECD_02135 +0.6 1.8 ferredoxin-type protein, role in electron transfer to periplasmic nitrate reductase NapA compare
ECD_01235 +0.6 1.2 tryptophan synthase, beta subunit compare
ECD_02770 +0.6 1.9 uncharacterized protein compare
ECD_04303 +0.6 1.0 KGG family protein compare
ECD_00899 +0.6 1.2 dimethyl sulfoxide reductase, anaerobic, subunit B compare
ECD_01634 +0.6 1.4 multidrug efflux system transporter compare
ECD_00226 +0.6 2.6 DNA polymerase IV compare
ECD_03407 +0.6 1.5 toxic polypeptide, small compare
ECD_01650 +0.6 1.7 component of SufBCD Fe-S cluster assembly scaffold compare
ECD_03671 +0.6 1.5 TDP-Fuc4NAc:lipidIIFuc4NAc transferase compare
ECD_00018 +0.6 1.4 sodium-proton antiporter compare
ECD_02308 +0.6 2.2 transcriptional regulator of yefH compare
ECD_01655 +0.6 1.2 1,4-dihydroxy-2-naphthoyl-CoA hydrolase compare
ECD_01498 +0.6 0.9 NADP-dependent 3-hydroxy acid dehydrogenase; malonic semialdehyde reductase compare
ECD_01060 +0.6 1.7 glutaredoxin 2 (Grx2) compare
ECD_01012 +0.6 1.1 putative reactive intermediate detoxifying aminoacrylate hydrolase compare
ECD_01789 +0.5 1.8 mannose-specific enzyme IID component of PTS compare
ECD_02710 +0.5 0.9 CTP:molybdopterin cytidylyltransferase compare
ECD_01956 +0.5 1.7 putative glycosyl transferase compare
ECD_01907 +0.5 1.9 hypothetical protein compare
ECD_04010 +0.5 2.4 suppressor of F exclusion of phage T7 compare
ECD_03530 +0.5 0.9 hypothetical protein compare
ECD_01773 +0.5 0.9 putative YeaWX dioxygenase beta subunit, reductase component compare
ECD_00454 +0.5 1.9 allD operon transcriptional activator compare
ECD_01562 +0.5 1.5 putative dethiobiotin synthetase compare
ECD_02474 +0.5 1.8 uracil-DNA-glycosylase compare
ECD_00742 +0.5 1.7 biotin synthase compare
ECD_00813 +0.5 0.9 transcriptional regulator of csgD and ybiJI; autoregulator compare
ECD_04371 +0.5 1.4 DUF2387 family putative metal-binding protein compare
ECD_01053 +0.5 1.0 putative cytochrome b561 compare
ECD_01396 +0.5 0.9 putative DNA-binding transcriptional regulator and putative aminotransferase compare
ECD_03357 +0.5 0.8 acid-resistance protein compare
ECD_03999 +0.5 0.9 antitoxin of GhoTS toxin-antitoxin pair; endonuclease for ghoT mRNA compare
ECD_00938 +0.5 1.2 aliphatic sulfonate ABC transporter permease compare
ECD_00280 +0.5 2.0 broad specificity NADPH-dependent aldehyde reductase, Zn-containing compare
ECD_03187 +0.5 2.1 bacterioferritin, iron storage and detoxification protein compare
ECD_04005 +0.5 2.4 putative transcriptional regulator compare
ECD_01066 +0.5 1.9 export chaperone for FlgK and FlgL compare
ECD_04177 +0.5 2.1 N-acetylneuraminic acid mutarotase compare
ECD_00968 +0.5 1.3 UPF0319 family protein compare
ECD_01535 +0.5 1.2 hypothetical protein compare
ECD_01889 +0.5 1.1 cytochrome b561-like protein compare
ECD_01034 +0.5 0.8 curli production assembly/transport outer membrane lipoprotein compare
ECD_04132 +0.5 2.2 5-keto-D-gluconate-5-reductase compare
ECD_01107 +0.5 1.5 repressor for bhsA(ycfR) compare
ECD_04051 +0.5 0.8 UPF0719 family inner membrane protein compare
ECD_01353 +0.5 1.1 putative membrane-anchored protein, function unknown compare
ECD_01842 +0.5 1.1 tRNA (cmo5U34)-carboxymethyltransferase, carboxy-SAM-dependent compare
ECD_02874 +0.5 1.8 DUF2623 family protein compare
ECD_01288 +0.5 1.4 putative sugar ABC transporter permease compare
ECD_01374 +0.5 1.9 cytochrome b561 compare
ECD_00260 +0.5 0.9 reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide-dependent disulfide oxidoreductase family compare
ECD_04388 +0.5 1.3 putative membrane-bound BasS regulator compare
ECD_01836 +0.5 1.8 dihydroneopterin triphosphate pyrophosphatase compare
ECD_02033 +0.5 0.8 hypothetical protein compare
ECD_02455 +0.5 2.5 putative DNA-binding transcriptional regulator compare
ECD_03425 +0.5 0.9 putative hydrogenase, 4Fe-4S ferredoxin-type component compare
ECD_02081 +0.5 1.6 DUF418 family putative inner membrane protein compare
ECD_00552 +0.5 0.6 stimulator of EntF adenylation activity, MbtH-like compare
ECD_00622 +0.5 2.0 glutamate/aspartate ABC transporter permease compare
ECD_01979 +0.5 1.1 multidrug efflux system, subunit A compare
ECD_02150 +0.5 1.9 short chain fatty acid transporter compare
ECD_03252 +0.5 2.7 ribosome-associated heat shock protein Hsp15 compare
ECD_00157 +0.5 1.5 vitamin B12 ABC transporter periplasmic binding protein compare
ECD_00439 +0.5 1.0 inner membrane protein; stimulator of the QmcA suppressor of ftsH-htpX compare
ECD_02137 +0.5 2.4 malate dehydrogenase, FAD/NAD(P)-binding domain compare
ECD_01101 +0.5 1.1 OM lipoprotein stimulator of MrcB transpeptidase compare
ECD_02066 +0.4 1.4 DedA family inner membrane protein compare
ECD_02814 +0.4 1.9 hypothetical protein compare
ECD_03022 +0.4 1.6 GIY-YIG nuclease superfamily protein compare
ECD_02862 +0.4 1.6 putative ATP-binding protein compare
ECD_00986 +0.4 1.3 putative O-antigen capsule outer membrane auxillary protein export channel compare
ECD_03020 +0.4 1.8 stress-resistance protein compare
ECD_03848 +0.4 2.4 transcriptional repressor of fabA and fabB compare
ECD_03107 +0.4 2.2 dTTP/UTP pyrophosphatase; m(5)UTP/m(5)CTP/pseudo-UTP pyrophosphatase compare
ECD_01693 +0.4 1.1 uncharacterized protein compare
ECD_01774 +0.4 0.8 ribonuclease D compare
ECD_00278 +0.4 1.6 carbamate kinase-like protein compare
ECD_00976 +0.4 1.6 hydrogenase 1, large subunit compare
ECD_01391 +0.4 1.2 BenE family inner membrane putative transporter compare
ECD_01651 +0.4 1.2 SufBCD Fe-S cluster assembly scaffold protein, ATP-binding protein compare
ECD_01559 +0.4 0.9 oxidoreductase, membrane subunit compare
ECD_02387 +0.4 1.2 putative oxidoreductase compare
ECD_01852 +0.4 0.7 chemotaxis regulator, protein phosphatase for CheY compare
ECD_00100 +0.4 1.3 dGTP-preferring nucleoside triphosphate pyrophosphohydrolase compare
ECD_04115 +0.4 1.9 UPF0131 family protein compare
ECD_02918 +0.4 0.8 fimbrial protein compare
ECD_00335 +0.4 1.4 shikimate kinase II compare
ECD_00385 +0.4 1.5 putative lipoprotein compare
ECD_01830 +0.4 0.9 zinc ABC transporter permease compare
ECD_04182 +0.4 2.3 tyrosine recombinase/inversion of on/off regulator of fimA compare
ECD_00231 +0.4 1.2 peptide chain release factor 2 compare
ECD_00247 +0.4 1.6 UPF0153 cysteine cluster protein compare
ECD_01747 +0.4 1.2 methionine sulfoxide reductase B compare
ECD_03132 +0.4 0.7 dehydroshikimate reductase, NAD(P)-binding compare
ECD_02332 +0.4 1.8 RpoE-regulated lipoprotein compare
ECD_00195 +0.4 1.2 putative outer membrane protein compare
ECD_00162 +0.4 1.4 UPF0325 family protein compare
ECD_01237 +0.4 1.5 fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase compare
ECD_01317 +0.4 1.2 DNA endonuclease compare
ECD_02811 +0.4 1.9 hypothetical protein compare
ECD_00949 +0.4 0.8 dihydro-orotate oxidase, FMN-linked compare
ECD_03245 +0.4 1.7 DNA catabolic protein compare
ECD_00873 +0.4 1.2 putative NAD(P)H-dependent oxidoreductase compare
ECD_01216 +0.4 1.2 UPF0056 family inner membrane protein compare
ECD_02618 +0.4 1.2 putative SDR family oxidoreductase compare
ECD_01274 +0.4 1.6 glutamate--putrescine ligase compare
ECD_02122 +0.4 0.8 periplasmic thioredoxin of cytochrome c-type biogenesis compare
ECD_01863 +0.4 0.7 flagellar class II regulon transcriptional activator, with FlhC compare
ECD_00946 +0.4 1.1 putative fimbriae protein compare
ECD_00956 +0.4 0.6 DUF330 family putative lipoprotein compare
ECD_03868 +0.4 1.1 immediate sulfur donor in thiazole formation compare
ECD_03358 +0.4 0.6 stress response protein acid-resistance protein compare
ECD_00753 +0.4 1.0 putative acetate transporter; BAX Inhibitor-1 family inner membrane protein compare
ECD_02459 +0.4 0.9 gap repair protein compare
ECD_02294 +0.4 1.6 aminopeptidase compare
ECD_00959 +0.4 1.8 putative peptidase compare
ECD_02841 +0.4 1.2 bifunctional prepilin leader peptidase/ methylase compare
ECD_00430 +0.4 1.6 putative fosmidomycin efflux system protein compare
ECD_01482 +0.4 0.8 succinate semialdehyde dehydrogenase, NAD(P)+-dependent compare
ECD_00981 +0.4 1.4 cytochrome bd-II oxidase, subunit I compare
ECD_04166 +0.4 1.9 putative epimerase compare
ECD_00980 +0.4 1.7 hydrogenase-1 protein nickel incorporation factor compare


Specific Phenotypes

None in this experiment

For Escherichia coli BL21 in phage experiments

For phage MOI 10 across organisms