Experiment set6S141 for Erwinia tracheiphila SCR3

Compare to:

plant=Melon; plant sample=MP2; plant location=NA

200 most important genes:

  gene name fitness t score description  
LU632_RS15245 purE -3.9 -2.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
LU632_RS08335 -3.6 -1.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LU632_RS20780 -3.3 -0.7 hypothetical protein compare
LU632_RS08925 hisA -3.3 -3.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
LU632_RS01015 purD -2.9 -8.8 phosphoribosylamine--glycine ligase compare
LU632_RS09915 ompC -2.9 -12.4 porin OmpC compare
LU632_RS02875 leuB -2.7 -10.5 3-isopropylmalate dehydrogenase compare
LU632_RS05025 -2.6 -0.8 TIGR03749 family integrating conjugative element protein compare
LU632_RS15640 -2.6 -1.6 helix-turn-helix domain-containing protein compare
LU632_RS07865 purF -2.6 -16.0 amidophosphoribosyltransferase compare
LU632_RS00745 -2.5 -0.8 hypothetical protein compare
LU632_RS19600 argH -2.5 -11.2 argininosuccinate lyase compare
LU632_RS22015 pyrE -2.5 -4.5 orotate phosphoribosyltransferase compare
LU632_RS24445 -2.5 -1.0 DUF413 domain-containing protein compare
LU632_RS02880 leuA -2.4 -10.9 2-isopropylmalate synthase compare
LU632_RS12500 pyrF -2.4 -5.5 orotidine-5'-phosphate decarboxylase compare
LU632_RS09955 pyrD -2.4 -8.4 quinone-dependent dihydroorotate dehydrogenase compare
LU632_RS03370 -2.4 -0.9 integrase compare
LU632_RS02140 -2.4 -2.5 ribosome-associated protein compare
LU632_RS06535 -2.4 -0.7 tRNA-Ala compare
LU632_RS09745 -2.4 -1.5 DNA translocase FtsK 4TM domain-containing protein compare
LU632_RS19610 argB -2.3 -4.2 acetylglutamate kinase compare
LU632_RS02870 leuC -2.3 -10.5 3-isopropylmalate dehydratase large subunit compare
LU632_RS21755 -2.3 -11.3 adenylosuccinate synthase compare
LU632_RS20950 pyrB -2.3 -9.0 aspartate carbamoyltransferase compare
LU632_RS12260 -2.3 -1.0 tyrosine-type recombinase/integrase compare
LU632_RS10340 pyrC -2.3 -7.9 dihydroorotase compare
LU632_RS17975 purL -2.3 -14.8 phosphoribosylformylglycinamidine synthase compare
LU632_RS08275 purM -2.2 -7.3 phosphoribosylformylglycinamidine cyclo-ligase compare
LU632_RS19605 -2.2 -8.0 argininosuccinate synthase compare
LU632_RS00465 -2.2 -1.1 type III secretion system protein compare
LU632_RS14845 yceD -2.2 -1.0 23S rRNA accumulation protein YceD compare
LU632_RS24105 -2.2 -1.0 thioesterase family protein compare
LU632_RS00135 -2.2 -0.7 YibL family ribosome-associated protein compare
LU632_RS02070 hflC -2.2 -2.1 protease modulator HflC compare
LU632_RS08820 -2.2 -8.4 lipopolysaccharide biosynthesis protein compare
LU632_RS07775 aroC -2.1 -3.7 chorismate synthase compare
LU632_RS01020 purH -2.1 -4.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LU632_RS02750 carB -2.1 -12.4 carbamoyl-phosphate synthase large subunit compare
LU632_RS24405 -2.1 -9.9 branched-chain amino acid transaminase compare
LU632_RS14860 rne -2.1 -1.1 ribonuclease E compare
LU632_RS08060 -2.1 -1.3 phage protease compare
LU632_RS19620 argE -2.1 -6.0 acetylornithine deacetylase compare
LU632_RS02865 leuD -2.1 -5.9 3-isopropylmalate dehydratase small subunit compare
LU632_RS04305 -2.1 -0.9 DNA primase compare
LU632_RS18295 -2.0 -0.8 ISNCY family transposase compare
LU632_RS08830 galE -2.0 -9.1 UDP-glucose 4-epimerase GalE compare
LU632_RS16090 odhB -2.0 -1.0 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
LU632_RS08945 hisD -2.0 -6.3 histidinol dehydrogenase compare
LU632_RS11790 -2.0 -1.0 DUF2313 domain-containing protein compare
LU632_RS16880 -2.0 -0.8 DTW domain-containing protein compare
LU632_RS15860 istB -2.0 -2.1 IS21-like element helper ATPase IstB compare
LU632_RS08920 hisF -2.0 -5.6 imidazole glycerol phosphate synthase subunit HisF compare
LU632_RS08815 -2.0 -3.7 colanic acid biosynthesis glycosyltransferase WcaL compare
LU632_RS22935 envZ -2.0 -9.0 two-component system sensor histidine kinase EnvZ compare
LU632_RS08940 hisC -2.0 -8.5 histidinol-phosphate transaminase compare
LU632_RS15335 -2.0 -1.2 hypothetical protein compare
LU632_RS06615 ptsI -2.0 -9.2 phosphoenolpyruvate-protein phosphotransferase PtsI compare
LU632_RS22940 ompR -1.9 -5.1 two-component system response regulator OmpR compare
LU632_RS08790 -1.9 -6.5 EpsG family protein compare
LU632_RS24420 -1.9 -1.3 IlvGEDA operon leader peptide compare
LU632_RS08785 -1.9 -6.8 glycosyltransferase family 2 protein compare
LU632_RS06210 argA -1.9 -8.3 amino-acid N-acetyltransferase compare
LU632_RS06040 lysA -1.9 -5.8 diaminopimelate decarboxylase compare
LU632_RS25030 -1.9 -1.4 hypothetical protein compare
LU632_RS08915 hisIE -1.9 -4.1 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
LU632_RS08935 hisB -1.8 -7.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
LU632_RS16130 -1.8 -0.8 helix-turn-helix domain-containing protein compare
LU632_RS08950 hisG -1.8 -8.2 ATP phosphoribosyltransferase compare
LU632_RS15445 tyrA -1.8 -6.8 bifunctional chorismate mutase/prephenate dehydrogenase compare
LU632_RS23360 -1.8 -4.1 Sua5/YciO/YrdC/YwlC family protein compare
LU632_RS16110 sdhD -1.8 -5.9 succinate dehydrogenase membrane anchor subunit compare
LU632_RS09475 mntR -1.8 -2.6 manganese-binding transcriptional regulator MntR compare
LU632_RS16105 sdhA -1.8 -6.8 succinate dehydrogenase flavoprotein subunit compare
LU632_RS16120 -1.8 -10.9 citrate synthase compare
LU632_RS09795 aroA -1.7 -6.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
LU632_RS21240 mlaE -1.7 -3.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
LU632_RS20900 argF -1.7 -6.8 ornithine carbamoyltransferase compare
LU632_RS16675 -1.7 -2.2 hypothetical protein compare
LU632_RS02755 carA -1.7 -6.9 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
LU632_RS24890 pstA -1.7 -1.7 phosphate ABC transporter permease PstA compare
LU632_RS19640 metB -1.7 -6.5 cystathionine gamma-synthase compare
LU632_RS21225 mlaB -1.7 -3.2 lipid asymmetry maintenance protein MlaB compare
LU632_RS07740 -1.6 -1.0 phage transcriptional regulator compare
LU632_RS16115 sdhC -1.6 -5.3 succinate dehydrogenase cytochrome b556 subunit compare
LU632_RS22810 -1.6 -8.0 aspartate aminotransferase family protein compare
LU632_RS19615 argC -1.6 -5.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
LU632_RS15425 rpoE -1.6 -7.7 RNA polymerase sigma factor RpoE compare
LU632_RS21880 secB -1.6 -2.9 protein-export chaperone SecB compare
LU632_RS06985 -1.6 -0.8 hypothetical protein compare
LU632_RS24385 ilvC -1.6 -5.8 ketol-acid reductoisomerase compare
LU632_RS19980 glnD -1.6 -1.6 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
LU632_RS09670 artM -1.6 -3.5 arginine ABC transporter permease ArtM compare
LU632_RS02100 -1.6 -9.0 hemolysin family protein compare
LU632_RS26110 -1.6 -5.3 ParA family protein compare
LU632_RS21875 gpsA -1.6 -6.8 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
LU632_RS24400 ilvD -1.5 -6.7 dihydroxy-acid dehydratase compare
LU632_RS09420 -1.5 -1.2 hypothetical protein compare
LU632_RS14835 plsX -1.5 -3.2 phosphate acyltransferase PlsX compare
LU632_RS03140 sctS -1.5 -3.5 type III secretion system export apparatus subunit SctS compare
LU632_RS06905 -1.5 -0.9 excisionase compare
LU632_RS12910 -1.5 -1.0 NAD-dependent epimerase compare
LU632_RS08930 hisH -1.5 -5.8 imidazole glycerol phosphate synthase subunit HisH compare
LU632_RS20545 metC -1.5 -7.9 cystathionine beta-lyase compare
LU632_RS05115 -1.5 -1.5 hypothetical protein compare
LU632_RS25545 -1.5 -1.8 helix-turn-helix domain-containing protein compare
LU632_RS18585 -1.5 -1.1 DUF3251 domain-containing protein compare
LU632_RS06945 -1.5 -2.5 hypothetical protein compare
LU632_RS19495 gorA -1.5 -1.3 glutathione-disulfide reductase compare
LU632_RS16550 -1.5 -1.3 hypothetical protein compare
LU632_RS01190 proA -1.5 -5.6 glutamate-5-semialdehyde dehydrogenase compare
LU632_RS11860 -1.5 -4.3 DUF4406 domain-containing protein compare
LU632_RS05855 serA -1.4 -5.0 phosphoglycerate dehydrogenase compare
LU632_RS04810 -1.4 -0.9 hypothetical protein compare
LU632_RS14225 -1.4 -1.7 replication protein P compare
LU632_RS13885 -1.4 -0.9 terminase large subunit compare
LU632_RS16680 -1.4 -0.9 hypothetical protein compare
LU632_RS23620 -1.4 -3.2 VapC toxin family PIN domain ribonuclease compare
LU632_RS21365 mdh -1.4 -6.2 malate dehydrogenase compare
LU632_RS24035 metR -1.4 -4.4 HTH-type transcriptional regulator MetR compare
LU632_RS21055 rbfA -1.4 -1.0 30S ribosome-binding factor RbfA compare
LU632_RS14415 -1.4 -1.7 DUF2514 domain-containing protein compare
LU632_RS09520 -1.4 -2.0 hypothetical protein compare
LU632_RS22960 feoA -1.4 -0.6 ferrous iron transporter A compare
LU632_RS22135 glnG -1.4 -3.9 nitrogen regulation protein NR(I) compare
LU632_RS08770 -1.4 -5.2 polysaccharide export protein compare
LU632_RS15250 purK -1.4 -3.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
LU632_RS03310 -1.3 -8.2 sucrose-6-phosphate hydrolase compare
LU632_RS22410 metA -1.3 -7.0 homoserine O-succinyltransferase compare
LU632_RS03115 -1.3 -0.9 hypothetical protein compare
LU632_RS12925 rssB -1.3 -1.2 two-component system response regulator RssB compare
LU632_RS08775 -1.3 -3.1 protein tyrosine phosphatase compare
LU632_RS16100 -1.3 -3.1 succinate dehydrogenase iron-sulfur subunit compare
LU632_RS00535 -1.3 -2.4 acyl carrier protein compare
LU632_RS14545 -1.3 -1.6 excisionase compare
LU632_RS19260 panM -1.3 -2.1 aspartate 1-decarboxylase autocleavage activator PanM compare
LU632_RS13460 cmoB -1.3 -4.7 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
LU632_RS08780 wzc -1.3 -7.0 tyrosine-protein kinase Wzc compare
LU632_RS07955 -1.3 -7.9 pyridoxal phosphate-dependent aminotransferase compare
LU632_RS06470 -1.3 -1.6 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
LU632_RS11145 pykF -1.3 -2.4 pyruvate kinase PykF compare
LU632_RS17645 -1.3 -0.8 hypothetical protein compare
LU632_RS23980 tatC -1.3 -3.9 Sec-independent protein translocase subunit TatC compare
LU632_RS12905 hns -1.2 -0.7 DNA-binding transcriptional regulator H-NS compare
LU632_RS02545 serB -1.2 -0.8 phosphoserine phosphatase compare
LU632_RS21825 -1.2 -1.4 IS5 family transposase compare
LU632_RS04465 -1.2 -1.2 helix-turn-helix domain-containing protein compare
LU632_RS22140 glnL -1.2 -5.7 nitrogen regulation protein NR(II) compare
LU632_RS08260 ppk1 -1.2 -5.7 polyphosphate kinase 1 compare
LU632_RS22455 -1.2 -1.5 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
LU632_RS19275 ftsE -1.2 -3.3 cell division ATP-binding protein FtsE compare
LU632_RS19850 arfB -1.2 -2.3 aminoacyl-tRNA hydrolase compare
LU632_RS11245 slyB -1.2 -2.3 outer membrane lipoprotein SlyB compare
LU632_RS24490 -1.2 -1.0 hypothetical protein compare
LU632_RS09730 trxB -1.2 -1.9 thioredoxin-disulfide reductase compare
LU632_RS13330 -1.2 -1.4 hypothetical protein compare
LU632_RS02610 thrA -1.2 -5.2 bifunctional aspartate kinase/homoserine dehydrogenase I compare
LU632_RS01320 crcB -1.2 -1.6 fluoride efflux transporter CrcB compare
LU632_RS00720 -1.2 -1.8 Hcp family type VI secretion system effector compare
LU632_RS13370 pyk -1.2 -6.6 pyruvate kinase compare
LU632_RS09620 -1.2 -2.8 inner membrane protein YbjM compare
LU632_RS18865 tnpA -1.2 -1.2 IS200/IS605 family transposase compare
LU632_RS06635 zipA -1.2 -2.2 cell division protein ZipA compare
LU632_RS19665 ftsN -1.2 -2.4 cell division protein FtsN compare
LU632_RS22865 aroB -1.2 -1.4 3-dehydroquinate synthase compare
LU632_RS13170 -1.2 -0.8 YoaH family protein compare
LU632_RS03305 -1.1 -4.2 sucrose-specific PTS transporter subunit IIBC compare
LU632_RS22150 typA -1.1 -2.0 ribosome-dependent GTPase TypA compare
LU632_RS23985 tatB -1.1 -3.0 Sec-independent protein translocase protein TatB compare
LU632_RS07715 -1.1 -2.2 hypothetical protein compare
LU632_RS21235 mlaD -1.1 -3.7 outer membrane lipid asymmetry maintenance protein MlaD compare
LU632_RS03160 -1.1 -3.2 hypothetical protein compare
LU632_RS24980 -1.1 -1.1 helix-turn-helix domain-containing protein compare
LU632_RS17875 iscR -1.1 -1.3 Fe-S cluster assembly transcriptional regulator IscR compare
LU632_RS20505 -1.1 -0.8 IS256 family transposase compare
LU632_RS21245 mlaF -1.1 -3.4 phospholipid ABC transporter ATP-binding protein MlaF compare
LU632_RS22020 rph -1.1 -4.4 ribonuclease PH compare
LU632_RS24150 -1.1 -0.8 lipoprotein compare
LU632_RS00855 -1.1 -2.1 helix-turn-helix domain-containing protein compare
LU632_RS12200 -1.1 -1.8 excisionase family protein compare
LU632_RS14915 -1.1 -1.0 DDE-type integrase/transposase/recombinase compare
LU632_RS01740 -1.1 -1.4 hypothetical protein compare
LU632_RS17230 -1.1 -1.7 GtrA family protein compare
LU632_RS08500 -1.1 -0.7 transposase compare
LU632_RS16850 -1.1 -1.4 MFS transporter compare
LU632_RS13950 ychF -1.1 -1.5 redox-regulated ATPase YchF compare
LU632_RS21705 -1.1 -2.4 Opacity-associated protein A compare
LU632_RS22445 aroE -1.1 -1.3 shikimate dehydrogenase compare
LU632_RS03170 sctD -1.0 -2.9 type III secretion system inner membrane ring subunit SctD compare
LU632_RS09545 -1.0 -1.7 hypothetical protein compare
LU632_RS21955 -1.0 -0.6 glycosyltransferase family 4 protein compare
LU632_RS18120 -1.0 -1.6 hypothetical protein compare
LU632_RS03430 -1.0 -2.9 DUF4222 domain-containing protein compare
LU632_RS06335 -1.0 -2.9 glycerate kinase compare
LU632_RS26015 -1.0 -2.1 hypothetical protein compare
LU632_RS06555 -1.0 -1.0 IS110 family transposase compare
LU632_RS26120 -1.0 -1.1 WGR domain-containing protein compare
LU632_RS15005 -1.0 -1.7 hypothetical protein compare
LU632_RS15415 rseB -1.0 -2.4 sigma-E factor regulatory protein RseB compare
LU632_RS18700 -1.0 -1.5 HI1506-related protein compare


Specific Phenotypes

None in this experiment

For Erwinia tracheiphila SCR3 in in planta experiments

For in planta plant=Melon; plant sample=MP2; plant location=NA across organisms