Experiment set6S141 for Erwinia tracheiphila SCR3

Compare to:

plant=Melon; plant sample=MP2; plant location=NA

200 most detrimental genes:

  gene name fitness t score description  
LU632_RS20620 cpdA +5.4 29.5 3',5'-cyclic-AMP phosphodiesterase compare
LU632_RS04140 +4.2 4.4 terminase family protein compare
LU632_RS18560 +3.8 7.9 hypothetical protein compare
LU632_RS11095 +3.3 2.2 transposase zinc-binding domain-containing protein compare
LU632_RS25570 +3.3 5.7 ribbon-helix-helix domain-containing protein compare
LU632_RS10745 sirB1 +2.6 2.7 invasion regulator SirB1 compare
LU632_RS18880 +2.6 2.1 transposase compare
LU632_RS13335 +2.5 2.6 hypothetical protein compare
LU632_RS03630 +2.5 2.9 baseplate assembly protein compare
LU632_RS02580 trpR +2.4 2.6 trp operon repressor compare
LU632_RS22785 +2.2 4.3 YheU family protein compare
LU632_RS05180 +2.1 1.5 GNAT family N-acetyltransferase compare
LU632_RS05900 +2.1 2.2 hypothetical protein compare
LU632_RS03330 +2.1 10.7 LacI family DNA-binding transcriptional regulator compare
LU632_RS08180 rcsD +2.0 8.4 phosphotransferase RcsD compare
LU632_RS04205 +2.0 2.0 hypothetical protein compare
LU632_RS06480 rpoS +2.0 11.4 RNA polymerase sigma factor RpoS compare
LU632_RS20625 +2.0 3.4 DUF1249 family protein compare
LU632_RS23195 +1.9 4.1 amidohydrolase compare
LU632_RS17035 +1.9 1.7 DinI family protein compare
LU632_RS00835 +1.9 5.7 DeoR/GlpR family DNA-binding transcription regulator compare
LU632_RS08395 +1.9 1.5 LacI family DNA-binding transcriptional regulator compare
LU632_RS25615 +1.9 2.6 hypothetical protein compare
LU632_RS23785 +1.8 3.4 hypothetical protein compare
LU632_RS18400 +1.8 2.4 MFS transporter compare
LU632_RS10690 +1.8 2.1 hypothetical protein compare
LU632_RS19960 +1.7 1.8 hypothetical protein compare
LU632_RS14670 +1.7 1.4 host specificity protein compare
LU632_RS08170 rcsC +1.7 9.6 two-component system sensor histidine kinase RcsC compare
LU632_RS20490 +1.7 7.2 hypothetical protein compare
LU632_RS13255 proQ +1.7 4.8 RNA chaperone ProQ compare
LU632_RS13050 +1.6 1.4 sugar transferase compare
LU632_RS05510 speA +1.6 2.1 biosynthetic arginine decarboxylase compare
LU632_RS13475 +1.6 1.3 hypothetical protein compare
LU632_RS16545 +1.6 1.5 hypothetical protein compare
LU632_RS07980 nuoE +1.6 1.6 NADH-quinone oxidoreductase subunit NuoE compare
LU632_RS09695 +1.5 2.4 cold shock domain-containing protein compare
LU632_RS04045 +1.5 2.4 GntR family transcriptional regulator compare
LU632_RS13280 +1.5 3.1 DUF2184 domain-containing protein compare
LU632_RS23875 dsbA +1.5 1.1 thiol:disulfide interchange protein DsbA compare
LU632_RS06770 +1.5 2.9 hypothetical protein compare
LU632_RS10250 +1.4 1.7 phospholipase D family protein compare
LU632_RS19350 +1.4 1.6 hypothetical protein compare
LU632_RS13345 +1.4 2.1 YebG family protein compare
LU632_RS02150 cybC +1.4 2.7 cytochrome b562 compare
LU632_RS18215 +1.4 2.6 hypothetical protein compare
LU632_RS08425 +1.4 1.4 Rpn family recombination-promoting nuclease/putative transposase compare
LU632_RS03295 +1.3 5.4 aminoimidazole riboside kinase compare
LU632_RS00590 +1.3 1.9 chaperone-modulator protein CbpM compare
LU632_RS04705 +1.3 2.5 helix-turn-helix domain-containing protein compare
LU632_RS07345 +1.3 2.6 hypothetical protein compare
LU632_RS12350 +1.3 1.2 adenosine deaminase compare
LU632_RS19375 +1.2 2.2 hypothetical protein compare
LU632_RS20760 +1.2 1.9 hypothetical protein compare
LU632_RS17485 +1.2 1.9 hypothetical protein compare
LU632_RS04600 +1.2 1.1 hypothetical protein compare
LU632_RS19015 cspA +1.2 1.6 RNA chaperone/antiterminator CspA compare
LU632_RS15910 galK +1.2 1.5 galactokinase compare
LU632_RS03185 +1.2 1.2 sigma-70 family RNA polymerase sigma factor compare
LU632_RS14290 +1.2 3.3 hypothetical protein compare
LU632_RS15800 +1.2 1.9 hypothetical protein compare
LU632_RS19310 +1.2 2.0 hypothetical protein compare
LU632_RS20260 +1.2 0.7 DUF4113 domain-containing protein compare
LU632_RS17390 +1.2 2.0 DUF3102 domain-containing protein compare
LU632_RS23650 +1.2 3.1 DUF4158 domain-containing protein compare
LU632_RS24660 +1.1 1.8 NCS2 family permease compare
LU632_RS25350 +1.1 1.2 hypothetical protein compare
LU632_RS21530 +1.1 1.5 terminase large subunit compare
LU632_RS05010 +1.1 1.1 TIGR03745 family integrating conjugative element membrane protein compare
LU632_RS00725 tssJ +1.1 1.7 type VI secretion system lipoprotein TssJ compare
LU632_RS21580 +1.1 1.8 type II toxin-antitoxin system RelE/ParE family toxin compare
LU632_RS03325 +1.1 5.7 hypothetical protein compare
LU632_RS01965 +1.1 4.5 type 1 fimbrial protein compare
LU632_RS25500 +1.1 1.5 toxin compare
LU632_RS09650 +1.1 1.1 ISNCY family transposase compare
LU632_RS13850 fliT +1.1 1.4 flagella biosynthesis regulatory protein FliT compare
LU632_RS13210 cspE +1.1 2.1 transcription antiterminator/RNA stability regulator CspE compare
LU632_RS07285 +1.1 1.9 DinI family protein compare
LU632_RS17420 +1.0 0.9 phosphatidylinositol-specific phospholipase C domain-containing protein compare
LU632_RS05870 zapA +1.0 2.2 cell division protein ZapA compare
LU632_RS19020 +1.0 3.0 MarC family NAAT transporter compare
LU632_RS00760 +1.0 1.6 TagK domain-containing protein compare
LU632_RS03770 +1.0 1.4 hypothetical protein compare
LU632_RS20105 panC +1.0 2.1 pantoate--beta-alanine ligase compare
LU632_RS22665 +1.0 1.6 hypothetical protein compare
LU632_RS07125 +1.0 1.9 scaffolding protein compare
LU632_RS22010 slmA +1.0 2.5 nucleoid occlusion factor SlmA compare
LU632_RS13400 znuC +1.0 1.5 zinc ABC transporter ATP-binding protein ZnuC compare
LU632_RS12520 +1.0 2.0 lipopolysaccharide assembly protein LapA domain-containing protein compare
LU632_RS25455 +1.0 1.2 molybdopterin-guanine dinucleotide biosynthesis protein MobC compare
LU632_RS04790 +1.0 1.8 hypothetical protein compare
LU632_RS01285 ulaB +1.0 2.0 PTS ascorbate transporter subunit IIB compare
LU632_RS05015 +1.0 1.4 TIGR03750 family conjugal transfer protein compare
LU632_RS09535 +1.0 3.2 molybdopterin-synthase adenylyltransferase MoeB compare
LU632_RS13620 +1.0 1.6 phosphatase compare
LU632_RS09195 moaE +1.0 0.7 molybdopterin synthase catalytic subunit MoaE compare
LU632_RS09675 artQ +1.0 2.3 arginine ABC transporter permease ArtQ compare
LU632_RS20805 +0.9 1.2 AlpA family transcriptional regulator compare
LU632_RS03580 +0.9 1.4 head completion/stabilization protein compare
LU632_RS04190 +0.9 0.8 hypothetical protein compare
LU632_RS08585 +0.9 0.7 hydroxyethylthiazole kinase compare
LU632_RS07475 +0.9 1.1 recombinase family protein compare
LU632_RS24635 +0.9 2.9 hypothetical protein compare
LU632_RS13920 +0.9 2.3 rhamnan synthesis F family protein compare
LU632_RS23695 +0.9 1.5 MmcQ/YjbR family DNA-binding protein compare
LU632_RS00240 +0.9 2.2 organic hydroperoxide resistance protein compare
LU632_RS19215 +0.9 2.7 TOBE domain-containing protein compare
LU632_RS25980 +0.9 2.2 hypothetical protein compare
LU632_RS19705 glpK +0.9 2.4 glycerol kinase GlpK compare
LU632_RS06125 +0.9 1.9 AAA family ATPase compare
LU632_RS09045 +0.9 1.3 hypothetical protein compare
LU632_RS25250 gspI +0.9 1.5 type II secretion system minor pseudopilin GspI compare
LU632_RS07315 +0.9 1.2 3-ketoacyl-CoA thiolase compare
LU632_RS16775 +0.9 2.6 hypothetical protein compare
LU632_RS04885 +0.9 1.9 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
LU632_RS12840 +0.9 2.2 hypothetical protein compare
LU632_RS18265 +0.9 2.5 thioesterase family protein compare
LU632_RS05940 +0.9 2.0 hemolysin III family protein compare
LU632_RS03405 +0.9 1.6 hypothetical protein compare
LU632_RS08045 +0.9 1.8 LysR substrate-binding domain-containing protein compare
LU632_RS08485 +0.9 1.1 antitermination protein compare
LU632_RS21550 +0.9 0.7 hypothetical protein compare
LU632_RS13300 yobA +0.9 2.4 CopC domain-containing protein YobA compare
LU632_RS16745 +0.9 1.5 transposase compare
LU632_RS03075 pdhR +0.9 2.6 pyruvate dehydrogenase complex transcriptional repressor PdhR compare
LU632_RS08040 +0.9 0.9 hypothetical protein compare
LU632_RS11875 +0.9 1.5 hypothetical protein compare
LU632_RS14675 +0.9 2.0 hypothetical protein compare
LU632_RS13470 +0.9 2.0 hypothetical protein compare
LU632_RS12635 +0.9 0.8 FMN-dependent NADH-azoreductase compare
LU632_RS04385 +0.9 2.0 hypothetical protein compare
LU632_RS12215 +0.8 1.9 PTS transporter subunit EIIB compare
LU632_RS15025 +0.8 2.0 hypothetical protein compare
LU632_RS18930 sbcD +0.8 2.1 exonuclease subunit SbcD compare
LU632_RS25045 +0.8 1.0 hypothetical protein compare
LU632_RS02485 osmY +0.8 2.2 molecular chaperone OsmY compare
LU632_RS17385 +0.8 2.2 hypothetical protein compare
LU632_RS16450 +0.8 1.9 hypothetical protein compare
LU632_RS01760 +0.8 2.8 hypothetical protein compare
LU632_RS22295 zur +0.8 2.6 zinc uptake transcriptional repressor Zur compare
LU632_RS01975 +0.8 4.6 fimbrial biogenesis outer membrane usher protein compare
LU632_RS11815 +0.8 1.1 DUF1804 family protein compare
LU632_RS06415 +0.8 1.2 hypothetical protein compare
LU632_RS08080 +0.8 1.2 LysR family transcriptional regulator compare
LU632_RS05535 epd +0.8 2.5 erythrose-4-phosphate dehydrogenase compare
LU632_RS22070 +0.8 1.6 hypothetical protein compare
LU632_RS03555 +0.8 2.4 terminase family protein compare
LU632_RS12300 bioD +0.8 1.6 dethiobiotin synthase compare
LU632_RS03470 +0.8 2.6 hypothetical protein compare
LU632_RS06185 ptrA +0.8 1.2 pitrilysin compare
LU632_RS21690 +0.8 0.6 IS5 family transposase compare
LU632_RS08365 +0.8 1.6 hypothetical protein compare
LU632_RS06840 +0.8 1.6 hypothetical protein compare
LU632_RS16805 nrdI +0.8 1.8 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI compare
LU632_RS13675 +0.8 0.9 tRNA-Ser compare
LU632_RS11925 +0.8 1.3 alcohol dehydrogenase compare
LU632_RS24235 wecC +0.8 1.6 UDP-N-acetyl-D-mannosamine dehydrogenase compare
LU632_RS07500 +0.8 1.6 phage tail protein I compare
LU632_RS05370 +0.8 1.8 hypothetical protein compare
LU632_RS12930 rssA +0.8 2.9 patatin-like phospholipase RssA compare
LU632_RS20175 +0.8 0.6 hypothetical protein compare
LU632_RS05205 +0.7 1.6 hypothetical protein compare
LU632_RS04450 +0.7 0.8 SprT-like domain-containing protein compare
LU632_RS12400 +0.7 0.8 DNA-binding protein compare
LU632_RS23085 +0.7 1.2 DUF5993 family protein compare
LU632_RS20540 exbB +0.7 1.1 tol-pal system-associated acyl-CoA thioesterase compare
LU632_RS08065 +0.7 1.2 hypothetical protein compare
LU632_RS03195 +0.7 3.1 response regulator transcription factor compare
LU632_RS14005 +0.7 1.7 transglycosylase SLT domain-containing protein compare
LU632_RS17990 yfhb +0.7 1.9 phosphatidylglycerophosphatase C compare
LU632_RS26160 +0.7 1.8 ANR family transcriptional regulator compare
LU632_RS24590 +0.7 3.3 recombinase family protein compare
LU632_RS00440 +0.7 2.1 PrgH/EprH family type III secretion apparatus protein compare
LU632_RS02650 satP +0.7 1.8 acetate uptake transporter compare
LU632_RS23845 +0.7 1.3 DUF1493 family protein compare
LU632_RS22085 +0.7 1.8 DEAD/DEAH box helicase compare
LU632_RS07115 +0.7 2.6 terminase large subunit compare
LU632_RS07380 +0.7 1.0 DUF2913 family protein compare
LU632_RS07220 +0.7 1.7 hypothetical protein compare
LU632_RS03615 +0.7 1.3 phage virion morphogenesis protein compare
LU632_RS01180 +0.7 0.5 hypothetical protein compare
LU632_RS01700 +0.7 2.7 phage late control D family protein compare
LU632_RS23500 +0.7 1.3 hypothetical protein compare
LU632_RS26145 +0.7 2.7 hypothetical protein compare
LU632_RS03355 +0.7 1.5 hypothetical protein compare
LU632_RS10785 tagH +0.7 1.7 type VI secretion system-associated FHA domain protein TagH compare
LU632_RS08670 baeR +0.7 2.7 two-component system response regulator BaeR compare
LU632_RS06340 barA +0.7 2.3 two-component sensor histidine kinase BarA compare
LU632_RS21210 +0.7 1.0 helix-turn-helix domain-containing protein compare
LU632_RS23255 soxR +0.7 1.0 redox-sensitive transcriptional activator SoxR compare
LU632_RS19860 +0.7 1.0 YaeP family protein compare
LU632_RS20590 +0.7 1.1 antibiotic biosynthesis monooxygenase compare
LU632_RS13360 zwf +0.7 2.8 glucose-6-phosphate dehydrogenase compare
LU632_RS02585 yjjX +0.7 1.9 inosine/xanthosine triphosphatase compare
LU632_RS22050 +0.7 2.6 YicC family protein compare
LU632_RS06665 +0.7 1.1 IS481 family transposase compare
LU632_RS16530 +0.7 1.7 short-chain dehydrogenase/reductase SDR compare
LU632_RS04610 +0.7 1.2 hypothetical protein compare
LU632_RS10865 hxpB +0.7 1.9 hexitol phosphatase HxpB compare
LU632_RS23430 +0.7 2.6 DUF4225 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Erwinia tracheiphila SCR3 in in planta experiments

For in planta plant=Melon; plant sample=MP2; plant location=NA across organisms