Experiment set6S140 for Erwinia tracheiphila SCR3

Compare to:

plant=Melon; plant sample=MP1; plant location=NA

200 most important genes:

  gene name fitness t score description  
LU632_RS15245 purE -6.3 -2.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
LU632_RS25375 -4.3 -1.7 hypothetical protein compare
LU632_RS22960 feoA -3.7 -0.9 ferrous iron transporter A compare
LU632_RS09915 ompC -3.5 -11.8 porin OmpC compare
LU632_RS07865 purF -3.2 -17.9 amidophosphoribosyltransferase compare
LU632_RS02140 -3.2 -2.8 ribosome-associated protein compare
LU632_RS08275 purM -3.0 -7.0 phosphoribosylformylglycinamidine cyclo-ligase compare
LU632_RS02875 leuB -3.0 -12.1 3-isopropylmalate dehydrogenase compare
LU632_RS17975 purL -3.0 -16.6 phosphoribosylformylglycinamidine synthase compare
LU632_RS01015 purD -3.0 -8.8 phosphoribosylamine--glycine ligase compare
LU632_RS25495 -3.0 -1.7 type II toxin-antitoxin system MqsA family antitoxin compare
LU632_RS10340 pyrC -3.0 -8.8 dihydroorotase compare
LU632_RS09955 pyrD -2.9 -10.4 quinone-dependent dihydroorotate dehydrogenase compare
LU632_RS24150 -2.9 -1.2 lipoprotein compare
LU632_RS19610 argB -2.8 -3.6 acetylglutamate kinase compare
LU632_RS02750 carB -2.8 -13.9 carbamoyl-phosphate synthase large subunit compare
LU632_RS21700 fklB -2.8 -1.4 peptidylprolyl isomerase compare
LU632_RS18875 -2.7 -0.9 IS256 family transposase compare
LU632_RS08930 hisH -2.7 -9.7 imidazole glycerol phosphate synthase subunit HisH compare
LU632_RS07775 aroC -2.7 -3.6 chorismate synthase compare
LU632_RS22945 -2.7 -1.1 hypothetical protein compare
LU632_RS05515 speB -2.7 -1.2 agmatinase compare
LU632_RS22940 ompR -2.6 -6.4 two-component system response regulator OmpR compare
LU632_RS18420 -2.6 -0.9 LysE family translocator compare
LU632_RS16480 -2.6 -5.2 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
LU632_RS16100 -2.6 -3.5 succinate dehydrogenase iron-sulfur subunit compare
LU632_RS12710 -2.6 -0.8 DUF2498 family protein compare
LU632_RS04135 -2.6 -0.8 toxin compare
LU632_RS02880 leuA -2.5 -12.9 2-isopropylmalate synthase compare
LU632_RS21755 -2.5 -13.5 adenylosuccinate synthase compare
LU632_RS24405 -2.5 -11.9 branched-chain amino acid transaminase compare
LU632_RS22015 pyrE -2.5 -4.7 orotate phosphoribosyltransferase compare
LU632_RS23215 -2.5 -0.8 VirK/YbjX family protein compare
LU632_RS08925 hisA -2.5 -2.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
LU632_RS16415 tatE -2.5 -0.8 twin-arginine translocase subunit TatE compare
LU632_RS12500 pyrF -2.5 -7.8 orotidine-5'-phosphate decarboxylase compare
LU632_RS21875 gpsA -2.4 -8.5 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
LU632_RS02865 leuD -2.4 -6.5 3-isopropylmalate dehydratase small subunit compare
LU632_RS08800 -2.4 -2.8 glycosyltransferase compare
LU632_RS02870 leuC -2.4 -11.8 3-isopropylmalate dehydratase large subunit compare
LU632_RS06615 ptsI -2.4 -11.1 phosphoenolpyruvate-protein phosphotransferase PtsI compare
LU632_RS02100 -2.4 -14.6 hemolysin family protein compare
LU632_RS20950 pyrB -2.4 -8.8 aspartate carbamoyltransferase compare
LU632_RS08820 -2.3 -8.1 lipopolysaccharide biosynthesis protein compare
LU632_RS19605 -2.2 -7.1 argininosuccinate synthase compare
LU632_RS19600 argH -2.2 -10.1 argininosuccinate lyase compare
LU632_RS02755 carA -2.2 -7.3 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
LU632_RS16110 sdhD -2.2 -7.3 succinate dehydrogenase membrane anchor subunit compare
LU632_RS08645 -2.2 -2.2 T3SS effector OspC family protein compare
LU632_RS02050 miaA -2.2 -2.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LU632_RS24105 -2.2 -1.0 thioesterase family protein compare
LU632_RS08830 galE -2.2 -10.7 UDP-glucose 4-epimerase GalE compare
LU632_RS23980 tatC -2.2 -7.0 Sec-independent protein translocase subunit TatC compare
LU632_RS21940 -2.2 -3.0 glycosyltransferase compare
LU632_RS21955 -2.2 -0.9 glycosyltransferase family 4 protein compare
LU632_RS24155 -2.2 -1.4 class I adenylate cyclase compare
LU632_RS08935 hisB -2.2 -9.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
LU632_RS22935 envZ -2.2 -7.9 two-component system sensor histidine kinase EnvZ compare
LU632_RS23025 -2.2 -1.4 transposase domain-containing protein compare
LU632_RS15445 tyrA -2.1 -10.4 bifunctional chorismate mutase/prephenate dehydrogenase compare
LU632_RS09795 aroA -2.1 -7.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
LU632_RS19815 gmhB -2.1 -1.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
LU632_RS22135 glnG -2.1 -6.8 nitrogen regulation protein NR(I) compare
LU632_RS15250 purK -2.1 -4.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
LU632_RS08920 hisF -2.1 -6.0 imidazole glycerol phosphate synthase subunit HisF compare
LU632_RS08335 -2.1 -1.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LU632_RS15425 rpoE -2.1 -10.5 RNA polymerase sigma factor RpoE compare
LU632_RS24260 trxA -2.1 -2.9 thioredoxin TrxA compare
LU632_RS20900 argF -2.1 -9.1 ornithine carbamoyltransferase compare
LU632_RS01020 purH -2.1 -4.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LU632_RS22810 -2.0 -10.4 aspartate aminotransferase family protein compare
LU632_RS16105 sdhA -2.0 -9.4 succinate dehydrogenase flavoprotein subunit compare
LU632_RS25820 -2.0 -1.3 hypothetical protein compare
LU632_RS19615 argC -2.0 -7.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
LU632_RS24400 ilvD -2.0 -10.0 dihydroxy-acid dehydratase compare
LU632_RS04065 -2.0 -2.6 AlpA family phage regulatory protein compare
LU632_RS08945 hisD -2.0 -5.8 histidinol dehydrogenase compare
LU632_RS16090 odhB -2.0 -1.0 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
LU632_RS19285 rsmD -2.0 -1.7 16S rRNA (guanine(966)-N(2))-methyltransferase compare
LU632_RS20695 bacA -2.0 -3.3 undecaprenyl-diphosphate phosphatase compare
LU632_RS05120 -1.9 -0.9 TIGR03758 family integrating conjugative element protein compare
LU632_RS19620 argE -1.9 -4.6 acetylornithine deacetylase compare
LU632_RS08790 -1.9 -7.1 EpsG family protein compare
LU632_RS08770 -1.9 -8.3 polysaccharide export protein compare
LU632_RS06040 lysA -1.9 -7.0 diaminopimelate decarboxylase compare
LU632_RS21245 mlaF -1.9 -6.8 phospholipid ABC transporter ATP-binding protein MlaF compare
LU632_RS03210 -1.9 -2.7 EscI/YscI/HrpB family type III secretion system inner rod protein compare
LU632_RS02085 cysQ -1.8 -1.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
LU632_RS02615 thrB -1.8 -4.5 homoserine kinase compare
LU632_RS08775 -1.8 -5.3 protein tyrosine phosphatase compare
LU632_RS05225 -1.8 -2.4 hypothetical protein compare
LU632_RS08815 -1.8 -3.6 colanic acid biosynthesis glycosyltransferase WcaL compare
LU632_RS21225 mlaB -1.8 -3.7 lipid asymmetry maintenance protein MlaB compare
LU632_RS18685 -1.8 -1.7 DUF2635 domain-containing protein compare
LU632_RS22865 aroB -1.8 -1.2 3-dehydroquinate synthase compare
LU632_RS17240 -1.8 -3.0 hypothetical protein compare
LU632_RS08880 -1.8 -1.9 ABC transporter permease compare
LU632_RS00070 -1.7 -1.8 hypothetical protein compare
LU632_RS08780 wzc -1.7 -9.8 tyrosine-protein kinase Wzc compare
LU632_RS01320 crcB -1.7 -2.1 fluoride efflux transporter CrcB compare
LU632_RS05125 -1.7 -1.4 TIGR03745 family integrating conjugative element membrane protein compare
LU632_RS06210 argA -1.7 -7.1 amino-acid N-acetyltransferase compare
LU632_RS04180 -1.7 -2.3 hypothetical protein compare
LU632_RS07005 -1.7 -1.2 helix-turn-helix transcriptional regulator compare
LU632_RS12905 hns -1.7 -0.8 DNA-binding transcriptional regulator H-NS compare
LU632_RS05855 serA -1.7 -7.6 phosphoglycerate dehydrogenase compare
LU632_RS22140 glnL -1.7 -6.5 nitrogen regulation protein NR(II) compare
LU632_RS24385 ilvC -1.6 -6.0 ketol-acid reductoisomerase compare
LU632_RS16115 sdhC -1.6 -4.6 succinate dehydrogenase cytochrome b556 subunit compare
LU632_RS08850 rfbB -1.6 -1.9 dTDP-glucose 4,6-dehydratase compare
LU632_RS08785 -1.6 -5.7 glycosyltransferase family 2 protein compare
LU632_RS06585 -1.6 -1.0 FlxA-like family protein compare
LU632_RS22025 -1.6 -1.9 hypothetical protein compare
LU632_RS07035 -1.6 -1.5 recombination protein NinB compare
LU632_RS02610 thrA -1.6 -6.3 bifunctional aspartate kinase/homoserine dehydrogenase I compare
LU632_RS24490 -1.6 -1.3 hypothetical protein compare
LU632_RS01190 proA -1.6 -7.5 glutamate-5-semialdehyde dehydrogenase compare
LU632_RS19930 rseP -1.6 -5.7 sigma E protease regulator RseP compare
LU632_RS22410 metA -1.6 -6.7 homoserine O-succinyltransferase compare
LU632_RS19980 glnD -1.6 -1.9 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
LU632_RS23360 -1.6 -3.5 Sua5/YciO/YrdC/YwlC family protein compare
LU632_RS18910 -1.5 -1.5 hypothetical protein compare
LU632_RS03115 -1.5 -1.2 hypothetical protein compare
LU632_RS08915 hisIE -1.5 -3.2 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
LU632_RS06905 -1.5 -0.9 excisionase compare
LU632_RS08940 hisC -1.5 -8.4 histidinol-phosphate transaminase compare
LU632_RS18995 proC -1.5 -2.0 pyrroline-5-carboxylate reductase compare
LU632_RS12925 rssB -1.5 -1.4 two-component system response regulator RssB compare
LU632_RS12910 -1.5 -1.0 NAD-dependent epimerase compare
LU632_RS17320 fruK -1.5 -2.6 1-phosphofructokinase compare
LU632_RS09475 mntR -1.5 -2.7 manganese-binding transcriptional regulator MntR compare
LU632_RS14860 rne -1.5 -1.0 ribonuclease E compare
LU632_RS19185 -1.5 -1.2 IS256 family transposase compare
LU632_RS19990 -1.4 -1.7 DUF3461 family protein compare
LU632_RS16120 -1.4 -8.2 citrate synthase compare
LU632_RS14745 -1.4 -0.7 IS5 family transposase compare
LU632_RS14010 ldcA -1.4 -3.6 muramoyltetrapeptide carboxypeptidase compare
LU632_RS09085 pgl -1.4 -1.5 6-phosphogluconolactonase compare
LU632_RS14915 -1.4 -1.2 DDE-type integrase/transposase/recombinase compare
LU632_RS15025 -1.4 -2.9 hypothetical protein compare
LU632_RS19275 ftsE -1.4 -2.6 cell division ATP-binding protein FtsE compare
LU632_RS08885 -1.4 -2.4 ABC transporter ATP-binding protein compare
LU632_RS18700 -1.4 -1.9 HI1506-related protein compare
LU632_RS09245 -1.4 -3.4 L,D-transpeptidase family protein compare
LU632_RS16665 -1.4 -0.7 hypothetical protein compare
LU632_RS25350 -1.4 -0.7 hypothetical protein compare
LU632_RS09745 -1.4 -0.9 DNA translocase FtsK 4TM domain-containing protein compare
LU632_RS22150 typA -1.3 -1.9 ribosome-dependent GTPase TypA compare
LU632_RS01185 proB -1.3 -5.3 glutamate 5-kinase compare
LU632_RS01790 -1.3 -0.8 hypothetical protein compare
LU632_RS03310 -1.3 -7.5 sucrose-6-phosphate hydrolase compare
LU632_RS20505 -1.3 -1.2 IS256 family transposase compare
LU632_RS07030 -1.3 -2.5 hypothetical protein compare
LU632_RS11790 -1.3 -0.8 DUF2313 domain-containing protein compare
LU632_RS17035 -1.3 -0.6 DinI family protein compare
LU632_RS07955 -1.3 -6.9 pyridoxal phosphate-dependent aminotransferase compare
LU632_RS08950 hisG -1.3 -5.3 ATP phosphoribosyltransferase compare
LU632_RS18900 -1.3 -2.9 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
LU632_RS20545 metC -1.3 -6.3 cystathionine beta-lyase compare
LU632_RS06410 -1.3 -0.9 phosphoadenylyl-sulfate reductase compare
LU632_RS15830 -1.3 -0.9 Arm DNA-binding domain-containing protein compare
LU632_RS19495 gorA -1.3 -1.3 glutathione-disulfide reductase compare
LU632_RS13370 pyk -1.3 -6.4 pyruvate kinase compare
LU632_RS17830 -1.3 -1.1 MgtC/SapB family protein compare
LU632_RS21365 mdh -1.3 -4.7 malate dehydrogenase compare
LU632_RS13460 cmoB -1.3 -4.0 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
LU632_RS02730 rsmA -1.3 -1.8 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
LU632_RS04250 yiaK -1.3 -2.9 3-dehydro-L-gulonate 2-dehydrogenase compare
LU632_RS08315 bcp -1.3 -5.2 thioredoxin-dependent thiol peroxidase compare
LU632_RS19640 metB -1.3 -3.8 cystathionine gamma-synthase compare
LU632_RS18295 -1.3 -0.6 ISNCY family transposase compare
LU632_RS05960 sdhE -1.2 -2.7 FAD assembly factor SdhE compare
LU632_RS14660 -1.2 -1.9 IS5 family transposase compare
LU632_RS01130 -1.2 -1.6 acyl-CoA dehydrogenase family protein compare
LU632_RS17645 -1.2 -0.8 hypothetical protein compare
LU632_RS05900 -1.2 -2.0 hypothetical protein compare
LU632_RS04565 -1.2 -2.5 restriction endonuclease compare
LU632_RS06465 surE -1.2 -0.9 5'/3'-nucleotidase SurE compare
LU632_RS20110 panD -1.2 -3.4 aspartate 1-decarboxylase compare
LU632_RS15325 -1.2 -1.1 hypothetical protein compare
LU632_RS22295 zur -1.2 -3.6 zinc uptake transcriptional repressor Zur compare
LU632_RS08255 ppx -1.2 -2.3 exopolyphosphatase compare
LU632_RS08890 gndA -1.2 -2.1 NADP-dependent phosphogluconate dehydrogenase compare
LU632_RS06330 garR -1.2 -3.4 2-hydroxy-3-oxopropionate reductase compare
LU632_RS09185 moaC -1.2 -1.8 cyclic pyranopterin monophosphate synthase MoaC compare
LU632_RS03630 -1.2 -1.6 baseplate assembly protein compare
LU632_RS21705 -1.1 -2.7 Opacity-associated protein A compare
LU632_RS14500 -1.1 -1.9 hypothetical protein compare
LU632_RS09935 -1.1 -1.1 aliphatic sulfonate ABC transporter substrate-binding protein compare
LU632_RS04835 -1.1 -1.0 TIGR03758 family integrating conjugative element protein compare
LU632_RS11720 ydfG -1.1 -3.1 bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG compare
LU632_RS13170 -1.1 -0.8 YoaH family protein compare
LU632_RS19150 -1.1 -2.1 GNAT family N-acetyltransferase compare
LU632_RS20050 fhuD -1.1 -3.3 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
LU632_RS11620 -1.1 -2.7 DUF333 domain-containing protein compare
LU632_RS15415 rseB -1.1 -2.6 sigma-E factor regulatory protein RseB compare
LU632_RS07300 mlaA -1.1 -4.0 phospholipid-binding lipoprotein MlaA compare
LU632_RS21580 -1.1 -1.0 type II toxin-antitoxin system RelE/ParE family toxin compare
LU632_RS23310 gltP -1.1 -0.6 glutamate/aspartate:proton symporter GltP compare
LU632_RS09640 -1.1 -1.8 HlyD family secretion protein compare


Specific Phenotypes

None in this experiment

For Erwinia tracheiphila SCR3 in in planta experiments

For in planta plant=Melon; plant sample=MP1; plant location=NA across organisms