Experiment set6S138 for Escherichia coli BL21

Compare to:

Bas29

200 most important genes:

  gene name fitness t score description  
ECD_01162 -4.8 -3.3 fatty acid metabolism regulon transcriptional regulator compare
ECD_03358 -4.1 -2.3 stress response protein acid-resistance protein compare
ECD_00634 -3.7 -4.3 N-acetylglucosamine-6-phosphate deacetylase compare
ECD_02738 -3.0 -2.9 2-octaprenylphenol hydroxylase, FAD-dependent compare
ECD_02470 -2.9 -6.5 ATP-dependent RNA helicase compare
ECD_03308 -2.9 -2.8 PanD autocleavage accelerator, panothenate synthesis compare
ECD_03132 -2.9 -2.5 dehydroshikimate reductase, NAD(P)-binding compare
ECD_02205 -2.6 -4.3 NADH:ubiquinone oxidoreductase, membrane subunit J compare
ECD_04107 -2.6 -3.5 trehalose-6-P hydrolase compare
ECD_03625 -2.6 -5.4 5-methylaminomethyl-2-thiouridine modification at tRNA U34 compare
ECD_02203 -2.5 -6.2 NADH:ubiquinone oxidoreductase, membrane subunit L compare
ECD_03590 -2.4 -2.9 tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase compare
ECD_01775 -2.4 -2.4 acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) compare
ECD_03488 -2.4 -3.9 UDP-glucose:(heptosyl)lipopolysaccharide alpha-1,3-glucosyltransferase; lipopolysaccharide core biosynthesis protein; lipopolysaccharide glucosyltransferase I compare
ECD_02210 -2.3 -3.6 NADH:ubiquinone oxidoreductase, chain E compare
ECD_03692 -2.3 -7.5 magnesium/nickel/cobalt transporter compare
ECD_00933 -2.3 -4.6 outer membrane porin 1a (Ia compare
ECD_02202 -2.2 -5.3 NADH:ubiquinone oxidoreductase, membrane subunit M compare
ECD_02204 -2.1 -2.0 NADH:ubiquinone oxidoreductase, membrane subunit K compare
ECD_04038 -2.1 -2.5 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase compare
ECD_02201 -2.0 -6.0 NADH:ubiquinone oxidoreductase, membrane subunit N compare
ECD_03121 -2.0 -1.5 putative membrane protein compare
ECD_04070 -2.0 -2.9 50S ribosomal subunit protein L9 compare
ECD_02207 -2.0 -3.2 NADH:ubiquinone oxidoreductase, membrane subunit H compare
ECD_03036 -2.0 -2.4 transcription termination/antitermination L factor compare
ECD_02820 -2.0 -1.8 hypothetical protein compare
ECD_03037 -2.0 -4.3 ribosome maturation factor for 30S subunits compare
ECD_02206 -1.9 -2.4 NADH:ubiquinone oxidoreductase, chain I compare
ECD_01779 -1.9 -1.8 putative reactive intermediate deaminase compare
ECD_02209 -1.9 -4.5 NADH:ubiquinone oxidoreductase, chain F compare
ECD_01925 -1.8 -1.6 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
ECD_00054 -1.8 -2.4 protein associated with Co2+ and Mg2+ efflux compare
ECD_t00019 -1.8 -1.4 tRNA-Lys compare
ECD_03556 -1.8 -2.2 ilvB operon leader peptide compare
ECD_02549 -1.7 -7.1 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor compare
ECD_03735 -1.7 -4.5 NAD(P)H-flavin reductase compare
ECD_04018 -1.7 -1.6 entericidin A membrane lipoprotein, antidote entericidin B compare
ECD_02208 -1.7 -6.0 NADH:ubiquinone oxidoreductase, chain G compare
ECD_03696 -1.6 -1.6 DUF2628 family putative inner membrane protein compare
ECD_01255 -1.6 -2.3 phosphatidylglycerophosphatase B compare
ECD_00596 -1.6 -1.9 TatABCE protein translocation system subunit compare
ECD_02211 -1.6 -5.0 NADH:ubiquinone oxidoreductase, fused CD subunit compare
ECD_01645 -1.6 -2.1 pyruvate kinase I compare
ECD_00333 -1.6 -4.3 pyrroline-5-carboxylate reductase, NAD(P)-binding compare
ECD_01721 -1.5 -2.1 TVP38/TMEM64 family inner membrane protein compare
ECD_03238 -1.5 -2.6 D-ribulose-5-phosphate 3-epimerase compare
ECD_02628 -1.5 -2.4 antitoxin of the ChpA-ChpR toxin-antitoxin system compare
ECD_02212 -1.5 -5.1 NADH:ubiquinone oxidoreductase, chain B compare
ECD_01478 -1.5 -1.8 altronate oxidoreductase, NAD-dependent compare
ECD_00053 -1.5 -2.5 diadenosine tetraphosphatase compare
ECD_01489 -1.5 -2.8 transcriptional repressor of multiple antibiotic resistance compare
ECD_00032 -1.5 -1.5 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) compare
ECD_03046 -1.4 -3.0 transcript cleavage factor compare
ECD_t00083 -1.4 -2.7 tRNA-Leu compare
ECD_02740 -1.4 -5.6 proline aminopeptidase P II compare
ECD_01137 -1.4 -1.9 repressor of blue light-responsive genes compare
ECD_t00077 -1.4 -1.3 tRNA-Thr compare
ECD_00500 -1.4 -1.6 DLP12 prophage; endonuclease RUS compare
ECD_02410 -1.4 -1.3 multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase compare
ECD_01032 -1.4 -1.7 redox enzyme maturation protein (REMP) chaperone for YcdX compare
ECD_03731 -1.3 -2.6 TatABCE protein translocation system subunit compare
ECD_02718 -1.3 -2.7 putative 4Fe-4S ferredoxin-type oxidoreductase subunit compare
ECD_03242 -1.3 -1.3 shikimate kinase I compare
ECD_00889 -1.3 -1.5 leucyl/phenylalanyl-tRNA-protein transferase compare
ECD_02305 -1.3 -1.4 DUF1323 family putative DNA-binding protein compare
ECD_03096 -1.3 -2.0 malate dehydrogenase, NAD(P)-binding compare
ECD_04049 -1.3 -1.4 PspA/IM30 family protein compare
ECD_00670 -1.2 -2.4 NIF3 family metal-binding protein compare
ECD_01424 -1.2 -1.4 nitrate reductase 2 (NRZ), delta subunit (assembly subunit) compare
ECD_00260 -1.2 -2.2 reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide-dependent disulfide oxidoreductase family compare
ECD_03756 -1.2 -6.3 GTP-binding protein compare
ECD_02463 -1.2 -3.3 back-translocating elongation factor EF4, GTPase compare
ECD_03067 -1.2 -1.6 RNA polymerase, sigma 54 (sigma N) factor compare
ECD_00434 -1.2 -1.1 putative DNA-binding transcriptional regulator compare
ECD_02365 -1.2 -1.7 palmitoyl-CoA esterase activity, uncertain physiological substrate compare
ECD_01063 -1.2 -1.9 UPF0502 family protein compare
ECD_00081 -1.2 -3.6 transcriptional repressor-activator for carbon metabolism compare
ECD_01906 -1.2 -1.2 hypothetical protein compare
ECD_00683 -1.1 -2.9 succinate dehydrogenase, flavoprotein subunit compare
ECD_00828 -1.1 -1.3 hypothetical protein compare
ECD_03031 -1.1 -4.2 polynucleotide phosphorylase/polyadenylase compare
ECD_03659 -1.1 -1.3 thioredoxin 1 compare
ECD_01896 -1.1 -1.4 putative multdrug exporter, MATE family compare
ECD_03727 -1.1 -2.1 aerobic ubiquinone synthesis protein, SCP2 family protein compare
ECD_03610 -1.1 -2.9 phosphate ABC transporter permease compare
ECD_00940 -1.1 -1.1 aliphatic sulfonate ABC transporter periplasmic binding protein compare
ECD_03534 -1.1 -1.4 hypothetical protein compare
ECD_02508 -1.1 -1.8 tmRNA-binding trans-translation protein compare
ECD_00682 -1.1 -1.6 succinate dehydrogenase, membrane subunit, binds cytochrome b556 compare
ECD_00633 -1.1 -2.7 N-acetylglucosamine-inducible nag divergent operon transcriptional repressor compare
ECD_00984 -1.1 -2.3 tyrosine-protein kinase, role in O-antigen capsule formation compare
ECD_02557 -1.1 -7.2 sorbitol-inducible srl operon transcriptional repressor compare
ECD_00684 -1.1 -2.4 succinate dehydrogenase, FeS subunit compare
ECD_01084 -1.1 -3.2 DUF177 family protein compare
ECD_02765 -1.1 -3.2 transketolase 1, thiamine triphosphate-binding compare
ECD_02944 -1.1 -5.5 transcriptional repressor compare
ECD_01234 -1.1 -1.1 tryptophan synthase, alpha subunit compare
ECD_02895 -1.1 -2.5 transcriptional repressor for mcbR biofilm gene compare
ECD_01820 -1.1 -2.2 phosphoribosylglycinamide formyltransferase 2 compare
ECD_01030 -1.1 -1.4 glyoxylate/hydroxypyruvate reductase A compare
ECD_01749 -1.1 -1.0 D-hexose-6-phosphate epimerase-like protein compare
ECD_01245 -1.0 -2.7 23S rRNA pseudouridine(2605) synthase compare
ECD_03005 -1.0 -2.0 N-acetylgalactosamine-specific enzyme IIB component of PTS compare
ECD_01168 -1.0 -1.1 lytic murein endotransglycosylase E compare
ECD_01575 -1.0 -1.5 dihydromonapterin reductase, NADPH-dependent; dihydrofolate reductase isozyme compare
ECD_01835 -1.0 -1.2 UPF0082 family protein compare
ECD_03350 -1.0 -1.1 arsenical resistance operon transcriptional repressor; autorepressor compare
ECD_02963 -1.0 -3.3 hexuronate regulon transcriptional repressor; autorepressor compare
ECD_03489 -1.0 -4.7 lipopolysaccharide core biosynthesis protein compare
ECD_02239 -1.0 -1.3 membrane-anchored periplasmic protein involved in septation compare
ECD_01879 -1.0 -1.2 response regulator in two-component regulatory system with BarA compare
ECD_02473 -1.0 -1.7 autonomous glycyl radical cofactor compare
ECD_01887 -1.0 -1.0 inner membrane heme subunit for periplasmic YedYZ reductase compare
ECD_03256 -1.0 -4.0 sensory histidine kinase in two-component regulatory system with OmpR compare
ECD_01481 -1.0 -2.0 glutaminase 2 compare
ECD_01593 -1.0 -1.2 putative oxidoreductase compare
ECD_02132 -1.0 -1.3 ferredoxin-type protein compare
ECD_03097 -1.0 -3.2 l-arginine-responsive arginine metabolism regulon transcriptional regulator compare
ECD_03486 -1.0 -2.5 UDP-glucose:(Glucosyl) LPS alpha1,3-glucosyltransferase WaaO compare
ECD_02128 -1.0 -2.2 heme export ABC transporter ATPase compare
ECD_00339 -0.9 -2.0 hypothetical protein compare
ECD_01744 -0.9 -1.5 putative MFS sugar transporter, membrane protein compare
ECD_02399 -0.9 -2.5 GMP synthetase (glutamine aminotransferase) compare
ECD_03669 -0.9 -3.1 TDP-4-oxo-6-deoxy-D-glucose transaminase compare
ECD_01059 -0.9 -1.5 lipoprotein, DUF1439 family compare
ECD_03199 -0.9 -1.3 phi X174 lysis protein compare
ECD_03897 -0.9 -3.0 glucosephosphate isomerase compare
ECD_04259 -0.9 -2.3 phosphopentomutase compare
ECD_03671 -0.9 -1.2 TDP-Fuc4NAc:lipidIIFuc4NAc transferase compare
ECD_03342 -0.9 -3.3 phosphate transporter, low-affinity; tellurite importer compare
ECD_01109 -0.9 -1.3 L,D-transpeptidase linking Lpp to murein compare
ECD_02915 -0.9 -1.6 putative fimbrial-like adhesin protein compare
ECD_00393 -0.9 -1.8 periplasmic folding chaperone, has an inactive PPIase domain compare
ECD_00388 -0.9 -3.3 proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases compare
ECD_01498 -0.9 -0.7 NADP-dependent 3-hydroxy acid dehydrogenase; malonic semialdehyde reductase compare
ECD_01924 -0.9 -2.3 histidinol-phosphatase and imidazoleglycerol-phosphate dehydratase compare
ECD_04362 -0.9 -0.9 hypothetical protein compare
ECD_00142 -0.9 -2.8 poly(A) polymerase compare
ECD_01045 -0.9 -1.7 OPG biosynthetic periplasmic beta-1,6 branching glycosyltransferase compare
ECD_01615 -0.9 -1.8 putative efflux protein (PET) component of YdhJK efflux pump compare
ECD_02284 -0.9 -1.4 formyl-CoA transferase, NAD(P)-binding compare
ECD_00389 -0.9 -2.7 ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease compare
ECD_02459 -0.8 -1.7 gap repair protein compare
ECD_03455 -0.8 -5.3 mannitol-1-phosphate dehydrogenase, NAD-dependent compare
ECD_03752 -0.8 -4.9 coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen-independent compare
ECD_00496 -0.8 -1.2 DLP12 prophage; putative DNA-binding transcriptional regulator compare
ECD_00993 -0.8 -0.9 cold shock gene compare
ECD_03685 -0.8 -0.8 diaminopimelate epimerase compare
ECD_02175 -0.8 -1.5 inactive PncC family protein compare
ECD_01482 -0.8 -1.2 succinate semialdehyde dehydrogenase, NAD(P)+-dependent compare
ECD_00949 -0.8 -1.3 dihydro-orotate oxidase, FMN-linked compare
ECD_00026 -0.8 -2.7 hypothetical protein compare
ECD_02826 -0.8 -0.9 hypothetical protein compare
ECD_00136 -0.8 -1.3 putative fimbrial-like adhesin protein compare
ECD_02539 -0.8 -4.6 transcriptional repressor of microcin B17 synthesis and multidrug efflux compare
ECD_00765 -0.8 -1.1 DUF1768 family protein compare
ECD_02477 -0.8 -1.7 DTW domain protein compare
ECD_02097 -0.8 -2.1 fructose-1-phosphate kinase compare
ECD_02529 -0.8 -1.6 hydrogen donor for NrdEF electron transport system; glutaredoxin-like protein compare
ECD_01878 -0.8 -1.6 excinuclease UvrABC, endonuclease subunit compare
ECD_01724 -0.8 -2.2 putative ABC transporter permease compare
ECD_00380 -0.8 -0.9 cytochrome o ubiquinol oxidase subunit IV compare
ECD_t00038 -0.8 -1.2 tRNA-Arg compare
ECD_01706 -0.8 -1.2 N,N'-diacetylchitobiose-specific enzyme IIC component of PTS compare
ECD_02076 -0.8 -0.5 dihydropyrimidine dehydrogenase, NADH-dependent, subunit C compare
ECD_03086 -0.8 -1.6 sialic acid-inducible nan operon repressor compare
ECD_01650 -0.8 -1.9 component of SufBCD Fe-S cluster assembly scaffold compare
ECD_t00011 -0.8 -1.4 tRNA-Gln compare
ECD_02996 -0.8 -2.0 transcriptional repressor of the aga regulon compare
ECD_02507 -0.8 -1.0 toxic UPF0083 family protein inhibitor of 70S ribosome formation compare
ECD_01250 -0.8 -1.3 DNA topoisomerase I, omega subunit compare
ECD_00326 -0.8 -0.8 DUF2755 family inner membrane protein compare
ECD_02321 -0.8 -1.1 cysteine synthase B (O-acetylserine sulfhydrolase B) compare
ECD_00810 -0.7 -1.9 uncharacterized protein compare
ECD_03801 -0.7 -4.2 6-phosphofructokinase I compare
ECD_02548 -0.7 -1.3 regulatory protein for RecA compare
ECD_03359 -0.7 -1.7 acid-resistance membrane protein compare
ECD_03277 -0.7 -3.3 sn-glycerol-3-phosphate dehydrogenase, aerobic, FAD/NAD(P)-binding compare
ECD_04260 -0.7 -2.9 purine nucleoside phosphorylase 1; nicotinamide 1-beta-D-riboside phosphorylase compare
ECD_01910 -0.7 -1.4 UPF0265 family protein compare
ECD_01015 -0.7 -2.3 pyrimidine oxygenase, FMN-dependent compare
ECD_01763 -0.7 -1.0 diguanylate cyclase compare
ECD_02618 -0.7 -1.3 putative SDR family oxidoreductase compare
ECD_02136 -0.7 -1.4 ecotin, a serine protease inhibitor compare
ECD_02298 -0.7 -2.2 glucokinase compare
ECD_00196 -0.7 -2.8 DL-methionine transporter subunit compare
ECD_01629 -0.7 -1.4 transcriptional repressor, hypoxanthine-binding compare
ECD_03056 -0.7 -2.4 ABC transporter maintaining OM lipid asymmetry, cytoplasmic STAS component compare
ECD_02919 -0.7 -1.3 motility and biofilm regulator compare
ECD_01203 -0.7 -2.3 nitrate reductase 1, beta (Fe-S) subunit compare
ECD_03241 -0.7 -2.7 3-dehydroquinate synthase compare
ECD_02297 -0.7 -0.5 putative enzyme IIB component of PTS compare
ECD_01166 -0.7 -1.2 putative cation/proton antiporter compare
ECD_00329 -0.7 -0.8 anti-RssB factor, RpoS stabilzer during Pi starvation; anti-adapter protein compare
ECD_02401 -0.7 -1.9 exonuclease VII, large subunit compare
ECD_02907 -0.7 -2.7 transport channel compare
ECD_02120 -0.7 -1.9 response regulator in two-component regulatory system with NarQ compare
ECD_01019 -0.7 -1.5 putative membrane protein compare
ECD_02998 -0.7 -1.7 N-acetylgalactosamine-specific enzyme IIB component of PTS compare
ECD_02435 -0.7 -2.1 DoxX family inner membrane protein compare


Specific Phenotypes

None in this experiment

For Escherichia coli BL21 in phage experiments

For phage MOI 10 across organisms