Experiment set6S134 for Escherichia coli BL21

Compare to:

Bas06

200 most detrimental genes:

  gene name fitness t score description  
ECD_02694 +1.2 2.0 putative LuxR family transcriptional regulator compare
ECD_01565 +1.2 2.4 putative arabinose efflux transporter compare
ECD_01691 +1.1 3.9 acid-inducible putative outer membrane protein compare
ECD_01435 +1.0 1.2 putative DNA-binding transcriptional regulator compare
ECD_04049 +0.8 1.9 PspA/IM30 family protein compare
ECD_03358 +0.8 1.6 stress response protein acid-resistance protein compare
ECD_01812 +0.8 1.8 CopC family protein compare
ECD_01042 +0.8 1.2 O-acetyl-ADP-ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthase C regulatory subunit compare
ECD_02034 +0.8 2.4 hypothetical protein compare
ECD_00681 +0.8 2.0 succinate dehydrogenase, membrane subunit, binds cytochrome b556 compare
ECD_01305 +0.7 2.2 S9-like protein non-peptidase family protein compare
ECD_04194 +0.7 2.7 uncharacterized protein compare
ECD_03785 +0.7 2.4 putative enzyme IIA component of PTS compare
ECD_01301 +0.7 2.0 lipid hydroperoxide peroxidase compare
ECD_01365 +0.7 1.5 putative esterase compare
ECD_00955 +0.7 2.0 paraquat-inducible, SoxRS-regulated MCE domain protein compare
ECD_03451 +0.6 1.6 TPR-like repeat protein compare
ECD_02103 +0.6 1.9 Zn-stimulated GTPase involved in zinc homeostasis; mutants are cadmium and EDTA sensitive; Zn(2+) binding protein compare
ECD_01071 +0.6 2.3 flagellar hook assembly protein compare
ECD_00499 +0.6 2.0 DLP12 prophage; uncharacterized protein compare
ECD_04391 +0.6 2.1 hypothetical protein compare
ECD_00569 +0.6 2.6 Spo0J family protein, ParB-like nuclease domain compare
ECD_01235 +0.6 2.1 tryptophan synthase, beta subunit compare
ECD_00531 +0.6 3.2 copper-sensing histidine kinase in two-component regulatory system with CusR compare
ECD_00374 +0.6 1.1 phage Phi6 host factor, ATP/GTP binding protein compare
ECD_01109 +0.6 1.0 L,D-transpeptidase linking Lpp to murein compare
ECD_03623 +0.6 1.5 ATP synthase, membrane-bound accessory factor compare
ECD_02067 +0.6 2.0 putative oxidoreductase compare
ECD_02345 +0.6 1.1 ethanolamine utilization protein, HSP70/actin superfamily protein compare
ECD_01849 +0.6 2.4 proton seal during flagellar secretion compare
ECD_01556 +0.6 1.8 putative selenate reductase, periplasmic compare
ECD_00584 +0.6 2.6 citrate lyase, citryl-ACP lyase (beta) subunit compare
ECD_04303 +0.6 1.3 KGG family protein compare
ECD_00704 +0.6 1.7 nicotinamide riboside transporter compare
ECD_03660 +0.6 0.9 rho operon leader peptide compare
ECD_01763 +0.6 0.8 diguanylate cyclase compare
ECD_00310 +0.6 3.4 alcohol dehydrogenase class III; glutathione-dependent formaldehyde dehydrogenase compare
ECD_00667 +0.5 1.4 DUF1722 family protein compare
ECD_00311 +0.5 1.2 regulator protein that represses frmRAB operon compare
ECD_02840 +0.5 1.2 secretin (GspDbeta) OM localization lipoprotein pilotin compare
ECD_00137 +0.5 2.7 putative fimbrial-like adhesin protein compare
ECD_01861 +0.5 2.3 proton conductor component of flagella motor compare
ECD_01584 +0.5 2.0 putative outer membrane porin for beta-glucuronides porin protein compare
ECD_01488 +0.5 1.3 putative phage protein compare
ECD_03481 +0.5 1.6 UDP-galactose:(Galactosyl) LPS alpha1,2-galactosyltransferase compare
ECD_01727 +0.5 2.2 CDP-alcohol phosphatidyltransferase family inner membrane protein compare
ECD_03001 +0.5 1.6 putative phosphotransferase system enzyme subunit (N-acetyl-galactosamine/galactosamine PTS system enzyme IIA component) compare
ECD_03308 +0.5 1.1 PanD autocleavage accelerator, panothenate synthesis compare
ECD_01255 +0.5 1.5 phosphatidylglycerophosphatase B compare
ECD_00492 +0.5 0.9 hypothetical protein compare
ECD_00898 +0.5 2.9 dimethyl sulfoxide reductase, anaerobic, subunit A compare
ECD_03837 +0.5 2.1 putative [formate-C-acetyltransferase 2]-activating enzyme; pyruvate formate-lyase 1-activating enzyme compare
ECD_01208 +0.5 2.0 formyltetrahydrofolate hydrolase compare
ECD_01792 +0.5 1.0 23S rRNA m(1)G745 methyltransferase, SAM-dependent compare
ECD_01101 +0.5 1.6 OM lipoprotein stimulator of MrcB transpeptidase compare
ECD_00753 +0.5 1.9 putative acetate transporter; BAX Inhibitor-1 family inner membrane protein compare
ECD_00949 +0.5 1.8 dihydro-orotate oxidase, FMN-linked compare
ECD_01845 +0.5 1.8 copper homeostasis protein compare
ECD_02174 +0.5 1.3 putative DNA-binding transcriptional regulator for the rhm operon compare
ECD_01979 +0.5 1.9 multidrug efflux system, subunit A compare
ECD_02416 +0.5 1.5 Fe(2+) donor and activity modulator for cysteine desulfurase compare
ECD_00231 +0.5 1.7 peptide chain release factor 2 compare
ECD_04018 +0.5 1.0 entericidin A membrane lipoprotein, antidote entericidin B compare
ECD_00487 +0.5 1.0 Excisionase compare
ECD_01049 +0.5 1.9 putative drug efflux system protein compare
ECD_01320 +0.5 1.8 ATP-dependent RNA helicase, specific for 23S rRNA compare
ECD_04193 +0.5 1.2 fructuronate-inducible hexuronate regulon transcriptional repressor; autorepressor compare
ECD_01852 +0.4 0.9 chemotaxis regulator, protein phosphatase for CheY compare
ECD_01589 +0.4 1.0 transcriptional repressor of Mal regulon compare
ECD_00156 +0.4 1.7 UPF0126 family inner membrane protein compare
ECD_01964 +0.4 1.6 putative acyl transferase compare
ECD_01865 +0.4 1.5 trehalose-6-phosphate synthase compare
ECD_00946 +0.4 0.8 putative fimbriae protein compare
ECD_01969 +0.4 1.5 inner membrane protein compare
ECD_00334 +0.4 2.7 UPF0178 family protein compare
ECD_01498 +0.4 0.7 NADP-dependent 3-hydroxy acid dehydrogenase; malonic semialdehyde reductase compare
ECD_00535 +0.4 1.5 copper/silver efflux system, membrane fusion protein compare
ECD_01801 +0.4 3.1 carboxy-terminal protease for penicillin-binding protein 3 compare
ECD_03534 +0.4 1.1 hypothetical protein compare
ECD_00794 +0.4 1.7 molybdopterin molybdenumtransferase; molybdopterin biosynthesis protein compare
ECD_01404 +0.4 1.5 DUF606 family inner membrane protein compare
ECD_04309 +0.4 1.1 uncharacterized protein compare
ECD_02028 +0.4 0.7 putative kinase compare
ECD_00151 +0.4 2.2 iron(3+)-hydroxamate import ABC transporter periplasmic binding protein compare
ECD_01679 +0.4 1.4 glutathione peroxidase compare
ECD_02584 +0.4 1.0 serine/threonine-specific protein phosphatase 2 compare
ECD_04170 +0.4 1.5 putative enzyme IIB component of PTS compare
ECD_00121 +0.4 1.2 PulS_OutS family protein compare
ECD_02405 +0.4 1.1 ancillary SecYEG translocon subunit; putative anti-RcsB factor compare
ECD_04211 +0.4 1.3 5-methylcytosine-specific restriction enzyme McrBC, subunit McrC compare
ECD_01577 +0.4 0.7 response regulator of RstAB two-component system compare
ECD_02951 +0.4 0.7 antitoxinof the HigB-HigA toxin-antitoxin system compare
ECD_04392 +0.4 1.3 uncharacterized protein compare
ECD_02474 +0.4 1.3 uracil-DNA-glycosylase compare
ECD_02915 +0.4 0.9 putative fimbrial-like adhesin protein compare
ECD_01694 +0.4 1.3 fructosamine kinase family protein compare
ECD_01374 +0.4 1.3 cytochrome b561 compare
ECD_01928 +0.4 1.1 phosphoribosyl-AMP cyclohydrolase and phosphoribosyl-ATP pyrophosphatase compare
ECD_02054 +0.4 1.1 putative response regulator in two-component system withYehU compare
ECD_00923 +0.4 1.6 protein kinase-like domain protein compare
ECD_00532 +0.4 1.2 response regulator in two-component regulatory system with CusS compare
ECD_02333 +0.4 1.1 inner membrane protein compare
ECD_02192 +0.4 1.2 isochorismate synthase 2 compare
ECD_01379 +0.4 0.9 putative DNA-binding transcriptional regulator compare
ECD_02064 +0.4 1.6 D-alanyl-D-alanine endopeptidase compare
ECD_02430 +0.4 2.5 3-phenylpropionate dioxygenase, large (alpha) subunit compare
ECD_00828 +0.4 1.2 hypothetical protein compare
ECD_02223 +0.4 1.8 putative inner membrane transporter; C4-dicarboxylate anaerobic carrier family protein compare
ECD_00048 +0.4 1.3 putative 4Fe-4S ferredoxin-type protein compare
ECD_00790 +0.4 2.1 putative pyruvate formate lyase compare
ECD_02600 +0.4 2.7 adenosine 5'-phosphosulfate kinase compare
ECD_01752 +0.4 1.2 protein kinase, endogenous substrate unidentified; autokinase compare
ECD_04087 +0.4 2.3 putative transcriptional regulator compare
ECD_00376 +0.4 1.4 hypothetical protein compare
ECD_02057 +0.4 1.0 putative membrane protein compare
ECD_03508 +0.4 1.1 tRNA mG18-2'-O-methyltransferase, SAM-dependent compare
ECD_02113 +0.4 1.9 16S rRNA pseudouridine(516) synthase compare
ECD_02310 +0.4 1.1 DUF3820 family protein compare
ECD_02177 +0.4 0.8 nucleoside triphosphatase compare
ECD_01906 +0.4 0.7 hypothetical protein compare
ECD_00899 +0.4 1.0 dimethyl sulfoxide reductase, anaerobic, subunit B compare
ECD_00834 +0.4 1.1 putative capsid scaffolding protein compare
ECD_01289 +0.4 1.3 putative sugar ABC transporter permease compare
ECD_01405 +0.4 1.0 methionine N-acyltransferase; L-amino acid N-acyltransferase compare
ECD_03338 +0.4 1.8 DUF4049 family protein compare
ECD_03357 +0.4 0.7 acid-resistance protein compare
ECD_04388 +0.4 1.2 putative membrane-bound BasS regulator compare
ECD_01926 +0.4 1.4 N-(5'-phospho-L-ribosyl-formimino)-5-amino-1- (5'-phosphoribosyl)-4-imidazolecarboxamide isomerase compare
ECD_00402 +0.3 1.1 nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB compare
ECD_01012 +0.3 1.0 putative reactive intermediate detoxifying aminoacrylate hydrolase compare
ECD_03260 +0.3 1.7 ferrous iron transporter, protein A conserved
ECD_02387 +0.3 0.8 putative oxidoreductase compare
ECD_03405 +0.3 1.2 HTH_CROC1 family putative transcriptional regulator compare
ECD_02563 +0.3 1.8 formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit compare
ECD_01860 +0.3 1.1 protein that enables flagellar motor rotation compare
ECD_00161 +0.3 1.9 carbohydrate diacid regulon transcriptional regulator; autoregulator compare
ECD_02163 +0.3 0.7 acid-inducible Kdo/WaaP family putative kinase compare
ECD_01033 +0.3 1.2 DUF1097 family inner membrane protein compare
ECD_00385 +0.3 1.2 putative lipoprotein compare
ECD_00192 +0.3 1.5 putative lipoprotein compare
ECD_00707 +0.3 1.0 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible compare
ECD_00495 +0.3 1.6 inactive polymorphonuclear leukocyte migration suppressor; DLP12 prophage; UPF0098 family secreted protein compare
ECD_02608 +0.3 2.1 sulfite reductase, beta subunit, NAD(P)-binding, heme-binding compare
ECD_00473 +0.3 1.7 N5-carboxyaminoimidazole ribonucleotide mutase compare
ECD_03131 +0.3 1.2 DUF1488 family protein compare
ECD_02250 +0.3 0.6 uncharacterized protein compare
ECD_00291 +0.3 1.9 cytosine/isoguanine deaminase compare
ECD_01966 +0.3 1.4 colanic acid production tyrosine-protein kinase; autokinase; Ugd phosphorylase compare
ECD_01210 +0.3 0.7 putative patatin-like family phospholipase compare
ECD_01529 +0.3 1.0 Qin prophage; uncharacterized protein compare
ECD_00533 +0.3 1.0 copper/silver efflux system, outer membrane component compare
ECD_01225 +0.3 0.9 putative DGPF domain-containing enzyme compare
ECD_02065 +0.3 1.2 Yip1 family inner membrane protein compare
ECD_01601 +0.3 0.6 SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport complex compare
ECD_02759 +0.3 1.8 putative PanK family P-loop kinase compare
ECD_01572 +0.3 1.0 pyridine nucleotide transhydrogenase, alpha subunit compare
ECD_04249 +0.3 2.0 dUMP phosphatase compare
ECD_00380 +0.3 0.6 cytochrome o ubiquinol oxidase subunit IV compare
ECD_00315 +0.3 1.3 taurine ABC transporter periplasmic binding protein compare
ECD_01443 +0.3 1.0 D,D-dipeptide ABC transporter permease compare
ECD_04079 +0.3 1.4 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) compare
ECD_00228 +0.3 1.2 mRNA interferase toxin of the YafO-YafN toxin-antitoxin system compare
ECD_04203 +0.3 1.7 putative ATPase, activator of (R)-hydroxyglutaryl-CoA dehydratase compare
ECD_00848 +0.3 1.1 bacteriophage tail fiber protein compare
ECD_03129 +0.3 1.2 putative amino acid ABC transporter ATPase compare
ECD_00254 +0.3 1.5 uncharacterized protein compare
ECD_02833 +0.3 1.1 putative type II secretion protein GspI compare
ECD_00274 +0.3 0.8 ankyrin repeat protein compare
ECD_00792 +0.3 1.2 fructose-6-phosphate aldolase 1 compare
ECD_01067 +0.3 0.7 anti-sigma factor for FliA (sigma 28) compare
ECD_02126 +0.3 1.5 heme export ABC transporter permease; CcmE-interacting protein compare
ECD_03847 +0.3 2.0 pyridine nucleotide transhydrogenase, soluble compare
ECD_00497 +0.3 1.8 DLP12 prophage; uncharacterized protein compare
ECD_01650 +0.3 0.9 component of SufBCD Fe-S cluster assembly scaffold compare
ECD_00513 +0.3 1.0 hypothetical protein compare
ECD_01126 +0.3 0.8 50S ribosomal protein L16 arginine hydroxylase; 2-oxoglutarate oxygenase compare
ECD_01724 +0.3 1.2 putative ABC transporter permease compare
ECD_00185 +0.3 0.9 putative lyase compare
ECD_01922 +0.3 0.9 bifunctional histidinal dehydrogenase/ histidinol dehydrogenase compare
ECD_00807 +0.3 0.5 deoxyribose-5-phosphate-inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx compare
ECD_00838 +0.3 0.7 putative phage tail protein compare
ECD_03249 +0.3 1.4 adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP-ribose/NADH hydrolase compare
ECD_02853 +0.3 1.3 hypothetical protein compare
ECD_01810 +0.3 1.4 DUF2511 family protein compare
ECD_01889 +0.3 0.6 cytochrome b561-like protein compare
ECD_00811 +0.3 1.0 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase; pyrimidine phosphatase; riboflavin synthesis compare
ECD_02169 +0.3 1.2 anaerobic sn-glycerol-3-phosphate dehydrogenase, C subunit, 4Fe-4S iron-sulfur cluster compare
ECD_02191 +0.3 1.6 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; SEPHCHC synthase compare
ECD_03340 +0.3 1.6 acid resistance protein, inner membrane compare
ECD_01034 +0.3 0.7 curli production assembly/transport outer membrane lipoprotein compare
ECD_00944 +0.3 1.9 putative outer membrane fimbrial subunit export usher protein compare
ECD_02194 +0.3 1.0 GNAT family putative N-acetyltransferase compare
ECD_02692 +0.3 1.4 short chain acyltransferase compare
ECD_03324 +0.3 1.3 4'-phosphopantetheinyl transferase compare
ECD_01652 +0.3 1.0 component of SufBCD complex compare
ECD_00325 +0.3 1.8 microcin Bac7 uptake protein; outer membrane surface-exposed lipoprotein compare
ECD_02324 +0.3 1.1 sulfate/thiosulfate ABC transporter permease compare
ECD_04308 +0.3 1.1 uncharacterized protein compare
ECD_00917 +0.3 1.9 ComEC family inner membrane protein compare
ECD_01655 +0.3 0.8 1,4-dihydroxy-2-naphthoyl-CoA hydrolase compare


Specific Phenotypes

None in this experiment

For Escherichia coli BL21 in phage experiments

For phage MOI 10 across organisms