Experiment set6S123 for Escherichia coli BL21

Compare to:

Bas14

200 most important genes:

  gene name fitness t score description  
ECD_00831 -6.6 -4.6 retron EC86 RNA-directed DNA polymerase-like protein compare
ECD_00830 -4.4 -4.3 hypothetical protein compare
ECD_03119 -3.9 -3.7 global DNA-binding transcriptional dual regulator compare
ECD_02286 -3.1 -2.3 putative lipoprotein involved in colanic acid biosynthesis compare
ECD_02182 -2.9 -4.7 undecaprenyl phosphate-alpha-L-ara4FN deformylase compare
ECD_04038 -2.9 -3.4 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase compare
ECD_02857 -2.8 -2.1 hypothetical protein compare
ECD_03590 -2.7 -3.7 tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase compare
ECD_03983 -2.6 -11.5 sensory histidine kinase in two-component regulatory system with BasR compare
ECD_03984 -2.5 -9.4 response regulator in two-component regulatory system with BasS compare
ECD_03731 -2.5 -4.3 TatABCE protein translocation system subunit compare
ECD_02889 -2.4 -6.9 septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts) compare
ECD_03625 -2.3 -7.4 5-methylaminomethyl-2-thiouridine modification at tRNA U34 compare
ECD_01489 -2.2 -4.1 transcriptional repressor of multiple antibiotic resistance compare
ECD_t00083 -2.1 -4.4 tRNA-Leu compare
ECD_01250 -2.1 -2.7 DNA topoisomerase I, omega subunit compare
ECD_03692 -2.0 -7.4 magnesium/nickel/cobalt transporter compare
ECD_03797 -2.0 -8.5 sensory histidine kinase in two-component regulatory system with CpxR compare
ECD_04107 -2.0 -3.9 trehalose-6-P hydrolase compare
ECD_03257 -1.8 -3.5 response regulator in two-component regulatory system with EnvZ compare
ECD_01930 -1.8 -9.5 UDP-glucose 6-dehydrogenase compare
ECD_02179 -1.6 -7.1 uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent compare
ECD_00006 -1.6 -7.0 peroxide resistance protein, lowers intracellular iron compare
ECD_00933 -1.6 -4.7 outer membrane porin 1a (Ia compare
ECD_01774 -1.6 -2.5 ribonuclease D compare
ECD_03685 -1.6 -1.1 diaminopimelate epimerase compare
ECD_03036 -1.5 -4.0 transcription termination/antitermination L factor compare
ECD_00333 -1.5 -7.4 pyrroline-5-carboxylate reductase, NAD(P)-binding compare
ECD_02180 -1.5 -7.1 undecaprenyl phosphate-L-Ara4FN transferase compare
ECD_02432 -1.5 -1.3 3-phenylpropionate dioxygenase, ferredoxin subunit compare
ECD_00015 -1.5 -6.9 chaperone Hsp40, DnaK co-chaperone compare
ECD_03093 -1.5 -3.4 DUF1043 family inner membrane-anchored protein compare
ECD_02335 -1.5 -4.3 N-acetylmuramoyl-l-alanine amidase I compare
ECD_02181 -1.4 -8.9 fused UDP-L-Ara4N formyltransferase/UDP-GlcA C-4'-decarboxylase compare
ECD_01529 -1.4 -1.8 Qin prophage; uncharacterized protein compare
ECD_00634 -1.3 -3.4 N-acetylglucosamine-6-phosphate deacetylase compare
ECD_00082 -1.3 -2.1 RsmH methytransferase inhibitor compare
ECD_03687 -1.3 -2.1 site-specific tyrosine recombinase compare
ECD_00574 -1.3 -4.7 alkyl hydroperoxide reductase, C22 subunit compare
ECD_02183 -1.3 -7.7 4-amino-4-deoxy-L-arabinose transferase compare
ECD_00054 -1.3 -1.9 protein associated with Co2+ and Mg2+ efflux compare
ECD_03818 -1.3 -2.5 essential cell division protein compare
ECD_04388 -1.3 -2.9 putative membrane-bound BasS regulator compare
ECD_00366 -1.2 -2.8 phosphatidylglycerophosphatase A compare
ECD_04119 -1.2 -1.5 SopA-central-domain-like hexapeptide repeat protein compare
ECD_02470 -1.2 -4.6 ATP-dependent RNA helicase compare
ECD_00423 -1.2 -4.3 gap repair protein compare
ECD_00494 -1.2 -2.1 DLP12 prophage; putative recombinase compare
ECD_03985 -1.2 -8.3 lipid A phosphoethanolamine transferase compare
ECD_03075 -1.2 -4.5 aerobic respiration control sensor histidine protein kinase, cognate to two-component response regulators ArcA and RssB compare
ECD_02220 -1.1 -1.7 UPF0208 family inner membrane protein compare
ECD_03046 -1.1 -3.2 transcript cleavage factor compare
ECD_02175 -1.1 -2.5 inactive PncC family protein compare
ECD_01399 -1.1 -1.9 putative ABC transporter permease compare
ECD_03509 -1.1 -4.5 ATP-dependent DNA helicase compare
ECD_00843 -1.1 -1.7 phage baseplate assembly protein compare
ECD_02331 -1.1 -2.3 porphyrinogen oxidase, cytoplasmic compare
ECD_01012 -1.1 -1.8 putative reactive intermediate detoxifying aminoacrylate hydrolase compare
ECD_01426 -1.1 -2.9 nitrate reductase 2 (NRZ), alpha subunit compare
ECD_02726 -1.0 -3.4 site-specific tyrosine recombinase compare
ECD_00948 -1.0 -3.2 putative periplasmic pilin chaperone compare
ECD_00960 -1.0 -2.4 Ter macrodomain organizer matS-binding protein compare
ECD_04051 -1.0 -2.1 UPF0719 family inner membrane protein compare
ECD_03212 -1.0 -1.8 stationary phase-induced protein, putative toxin compare
ECD_03256 -1.0 -4.7 sensory histidine kinase in two-component regulatory system with OmpR compare
ECD_00836 -1.0 -1.1 putative Regulatory protein compare
ECD_03669 -1.0 -4.2 TDP-4-oxo-6-deoxy-D-glucose transaminase compare
ECD_03816 -1.0 -2.5 molecular chaperone and ATPase component of HslUV protease compare
ECD_01240 -1.0 -2.2 PHP domain protein compare
ECD_01225 -1.0 -1.8 putative DGPF domain-containing enzyme compare
ECD_01953 -1.0 -2.4 colanic biosynthesis UDP-glucose lipid carrier transferase compare
ECD_03118 -0.9 -4.7 tRNA-dihydrouridine synthase B compare
ECD_04265 -0.9 -4.4 DNA repair protein compare
ECD_01878 -0.9 -2.5 excinuclease UvrABC, endonuclease subunit compare
ECD_01726 -0.9 -1.7 molybdopterin synthase sulfurtransferase compare
ECD_02548 -0.9 -2.4 regulatory protein for RecA compare
ECD_01162 -0.9 -1.5 fatty acid metabolism regulon transcriptional regulator compare
ECD_00680 -0.9 -2.8 citrate synthase compare
ECD_02667 -0.9 -5.2 exonuclease V (RecBCD complex), alpha chain compare
ECD_00896 -0.9 -2.4 recombination intermediate processing DNA-dependent ATPase compare
ECD_02507 -0.9 -1.3 toxic UPF0083 family protein inhibitor of 70S ribosome formation compare
ECD_00993 -0.9 -1.1 cold shock gene compare
ECD_01826 -0.9 -1.9 myristoyl-acyl carrier protein (ACP)-dependent acyltransferase compare
ECD_03037 -0.9 -3.0 ribosome maturation factor for 30S subunits compare
ECD_03583 -0.9 -5.6 gap repair protein compare
ECD_02524 -0.9 -2.0 DUF2892 family inner membrane rhodanese compare
ECD_02352 -0.9 -3.6 putative P-loop NTPase ethanolamine utilization protein compare
ECD_02042 -0.9 -1.4 DUF2574 family protein compare
ECD_00014 -0.8 -1.5 chaperone Hsp70, with co-chaperone DnaJ compare
ECD_03729 -0.8 -1.8 TatABCE protein translocation system subunit compare
ECD_01737 -0.8 -2.0 nicotinamidase/pyrazinamidase compare
ECD_01370 -0.8 -1.5 aldehyde dehydrogenase A, NAD-linked compare
ECD_01405 -0.8 -1.3 methionine N-acyltransferase; L-amino acid N-acyltransferase compare
ECD_t00011 -0.8 -1.8 tRNA-Gln compare
ECD_02151 -0.8 -2.9 acetyl-CoA acetyltransferase compare
ECD_01313 -0.8 -2.5 p-aminobenzoyl-glutamate transporter; membrane protein compare
ECD_02607 -0.8 -0.9 phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent compare
ECD_02382 -0.8 -2.2 putative processing element hydrogenase 4 compare
ECD_01557 -0.8 -2.0 S- and N-oxide reductase, A subunit, periplasmic compare
ECD_02377 -0.8 -2.0 hydrogenase 4, membrane subunit compare
ECD_03997 -0.8 -2.3 putative 4Fe-4S mono-cluster protein compare
ECD_00749 -0.8 -2.2 inactive molybdopterin adenylyltransferase compare
ECD_00970 -0.8 -1.8 heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA-binding protein compare
ECD_00053 -0.8 -1.7 diadenosine tetraphosphatase compare
ECD_03848 -0.8 -4.5 transcriptional repressor of fabA and fabB compare
ECD_02628 -0.8 -2.3 antitoxin of the ChpA-ChpR toxin-antitoxin system compare
ECD_t00038 -0.8 -2.1 tRNA-Arg compare
ECD_01174 -0.8 -2.1 dihydroxyacetone kinase, C-terminal domain compare
ECD_03029 -0.8 -3.7 ATP-dependent RNA helicase compare
ECD_01800 -0.8 -1.7 putative endopeptidase compare
ECD_00904 -0.8 -1.0 LysR family putative transcriptional regulator compare
ECD_03016 -0.8 -3.7 DnaA initiator-associating factor for replication initiation compare
ECD_03342 -0.8 -3.5 phosphate transporter, low-affinity; tellurite importer compare
ECD_03664 -0.8 -5.1 UDP-N-acetyl glucosamine-2-epimerase compare
ECD_02907 -0.8 -3.5 transport channel compare
ECD_01168 -0.8 -1.1 lytic murein endotransglycosylase E compare
ECD_04024 -0.8 -1.2 fumarate reductase (anaerobic), membrane anchor subunit compare
ECD_02833 -0.7 -2.0 putative type II secretion protein GspI compare
ECD_03668 -0.7 -3.1 TDP-fucosamine acetyltransferase compare
ECD_03752 -0.7 -5.0 coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen-independent compare
ECD_02919 -0.7 -2.0 motility and biofilm regulator compare
ECD_02254 -0.7 -2.0 chorismate synthase compare
ECD_02114 -0.7 -2.6 putative ATP-dependent DNA or RNA helicase compare
ECD_00651 -0.7 -1.6 response regulator in two-component regulatory system with KdpD compare
ECD_00835 -0.7 -1.1 hypothetical protein compare
ECD_02162 -0.7 -1.1 ferredoxin involved with ribonucleotide reductase diferric-tyrosyl radical (Y*) cofactor maintenance compare
ECD_03667 -0.7 -3.2 glucose-1-phosphate thymidylyltransferase compare
ECD_01928 -0.7 -1.2 phosphoribosyl-AMP cyclohydrolase and phosphoribosyl-ATP pyrophosphatase compare
ECD_00867 -0.7 -1.5 arginine ABC transporter permease compare
ECD_01681 -0.7 -1.2 integration host factor (IHF), DNA-binding protein, alpha subunit compare
ECD_03005 -0.7 -1.7 N-acetylgalactosamine-specific enzyme IIB component of PTS compare
ECD_02242 -0.7 -2.0 DedA family inner membrane protein compare
ECD_02650 -0.7 -2.6 D-ribose-binding periplasmic protein compare
ECD_00746 -0.7 -3.8 exision nuclease of nucleotide excision repair, DNA damage recognition component compare
ECD_02171 -0.7 -2.6 2-keto-3-deoxy-L-rhamnonate aldolase compare
ECD_02724 -0.7 -4.8 ssDNA exonuclease, 5 compare
ECD_03659 -0.7 -1.2 thioredoxin 1 compare
ECD_02239 -0.7 -1.1 membrane-anchored periplasmic protein involved in septation compare
ECD_01288 -0.7 -2.0 putative sugar ABC transporter permease compare
ECD_03040 -0.7 -1.3 preprotein translocase membrane subunit compare
ECD_01445 -0.7 -1.6 D,D-dipeptide ABC transporter periplasmic binding protein compare
ECD_t00077 -0.7 -1.0 tRNA-Thr compare
ECD_02996 -0.6 -2.5 transcriptional repressor of the aga regulon compare
ECD_01066 -0.6 -1.4 export chaperone for FlgK and FlgL compare
ECD_00862 -0.6 -1.4 putrescine ABC transporter permease compare
ECD_00940 -0.6 -1.0 aliphatic sulfonate ABC transporter periplasmic binding protein compare
ECD_03673 -0.6 -3.5 UDP-N-acetyl-D-mannosaminuronic acid transferase compare
ECD_00496 -0.6 -1.2 DLP12 prophage; putative DNA-binding transcriptional regulator compare
ECD_02652 -0.6 -2.4 hypothetical protein compare
ECD_00939 -0.6 -1.4 alkanesulfonate monooxygenase, FMNH(2)-dependent compare
ECD_03930 -0.6 -4.9 ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC compare
ECD_00020 -0.6 -1.1 hypothetical protein compare
ECD_00142 -0.6 -2.4 poly(A) polymerase compare
ECD_04111 -0.6 -2.4 enamine/imine deaminase, reaction intermediate detoxification compare
ECD_00434 -0.6 -0.8 putative DNA-binding transcriptional regulator compare
ECD_02943 -0.6 -2.1 putative tRNA binding protein; putative tRNA corner chaperone compare
ECD_01825 -0.6 -1.7 pyruvate kinase II compare
ECD_00032 -0.6 -1.1 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) compare
ECD_02732 -0.6 -1.3 UPF0267 family protein compare
ECD_00442 -0.6 -0.8 iron export ABC transporter permease; peroxide resistance protein compare
ECD_01053 -0.6 -0.9 putative cytochrome b561 compare
ECD_03507 -0.6 -1.7 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase compare
ECD_02973 -0.6 -1.0 DUF805 family inner membrane protein compare
ECD_02244 -0.6 -2.0 putative semialdehyde dehydrogenase compare
ECD_02035 -0.6 -1.7 hypothetical protein compare
ECD_03508 -0.6 -1.5 tRNA mG18-2'-O-methyltransferase, SAM-dependent compare
ECD_00377 -0.6 -0.8 putative acetyltransferase compare
ECD_02070 -0.6 -1.3 UPF0299 family inner membrane protein compare
ECD_01954 -0.6 -0.6 phosphomannomutase compare
ECD_01148 -0.6 -1.9 hypothetical protein compare
ECD_00626 -0.6 -1.9 putative ion transport compare
ECD_03756 -0.5 -3.9 GTP-binding protein compare
ECD_03556 -0.5 -1.3 ilvB operon leader peptide compare
ECD_00854 -0.5 -1.7 glutaredoxin 1, redox coenzyme for ribonucleotide reductase (RNR1a) compare
ECD_03122 -0.5 -1.9 acrAB operon transcriptional repressor compare
ECD_02659 -0.5 -3.1 glycine cleavage system transcriptional activator; autorepressor compare
ECD_01312 -0.5 -0.8 O-6-alkylguanine-DNA:cysteine-protein methyltransferase compare
ECD_03355 -0.5 -0.8 Putative LuxR family repressor for dicarboxylate transport compare
ECD_03396 -0.5 -4.5 KDO phosphoethanolamine transferase, Ca(2+)-inducible conserved
ECD_00407 -0.5 -1.0 DUF1428 family protein compare
ECD_02484 -0.5 -3.0 23S rRNA pseudouridine(1911,1915,1917) synthase compare
ECD_01863 -0.5 -0.8 flagellar class II regulon transcriptional activator, with FlhC compare
ECD_03468 -0.5 -2.3 glutaredoxin 3 compare
ECD_01835 -0.5 -0.8 UPF0082 family protein compare
ECD_02550 -0.5 -3.8 nicotinamide-nucleotide amidohydrolase; NMN amidohydrolase compare
ECD_01300 -0.5 -1.3 aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase compare
ECD_02401 -0.5 -2.1 exonuclease VII, large subunit compare
ECD_00532 -0.5 -1.2 response regulator in two-component regulatory system with CusS compare
ECD_00130 -0.5 -1.2 aspartate 1-decarboxylase compare
ECD_01045 -0.5 -1.4 OPG biosynthetic periplasmic beta-1,6 branching glycosyltransferase compare
ECD_03220 -0.5 -1.2 small lipoprotein compare
ECD_02250 -0.5 -0.7 uncharacterized protein compare
ECD_01188 -0.5 -1.3 SIRB family inner membrane protein compare
ECD_03132 -0.5 -1.2 dehydroshikimate reductase, NAD(P)-binding compare
ECD_01321 -0.5 -1.9 tRNA s(2)C32 thioltransferase, iron sulfur cluster protein compare
ECD_02060 -0.5 -1.5 putative ABC transporter permease compare
ECD_01804 -0.5 -1.3 inner membrane PqiA domain protein compare
ECD_00077 -0.5 -2.4 leu operon leader peptide compare
ECD_03671 -0.5 -0.8 TDP-Fuc4NAc:lipidIIFuc4NAc transferase compare
ECD_03498 -0.5 -2.0 nucleoid occlusion factor, anti-FtsZ division inhibitor compare


Specific Phenotypes

None in this experiment

For Escherichia coli BL21 in phage experiments

For phage MOI 10 across organisms