Experiment set6S118 for Escherichia coli BL21

Compare to:

Bas52

200 most important genes:

  gene name fitness t score description  
ECD_02423 -3.9 -3.7 isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor compare
ECD_02694 -3.8 -1.4 putative LuxR family transcriptional regulator compare
ECD_00176 -3.7 -1.4 periplasmic chaperone compare
ECD_00896 -3.3 -3.1 recombination intermediate processing DNA-dependent ATPase compare
ECD_01629 -3.1 -1.7 transcriptional repressor, hypoxanthine-binding compare
ECD_t00083 -3.0 -1.9 tRNA-Leu compare
ECD_02302 -2.9 -7.3 nucleoside (except guanosine) transporter compare
ECD_03506 -2.9 -1.5 RNA polymerase, omega subunit compare
ECD_03256 -2.9 -5.4 sensory histidine kinase in two-component regulatory system with OmpR compare
ECD_03031 -2.8 -8.2 polynucleotide phosphorylase/polyadenylase compare
ECD_04260 -2.7 -5.9 purine nucleoside phosphorylase 1; nicotinamide 1-beta-D-riboside phosphorylase compare
ECD_r00015 -2.7 -6.6 23S ribosomal RNA compare
ECD_00392 -2.7 -7.5 HU, DNA-binding transcriptional regulator, beta subunit compare
ECD_01681 -2.7 -2.7 integration host factor (IHF), DNA-binding protein, alpha subunit compare
ECD_02162 -2.7 -1.4 ferredoxin involved with ribonucleotide reductase diferric-tyrosyl radical (Y*) cofactor maintenance compare
ECD_00061 -2.7 -8.8 RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated, ATP-dependent RNA translocase compare
ECD_01774 -2.6 -1.9 ribonuclease D compare
ECD_03590 -2.6 -1.7 tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase compare
ECD_02393 -2.6 -4.4 polyphosphate kinase, component of RNA degradosome compare
ECD_03257 -2.5 -3.3 response regulator in two-component regulatory system with EnvZ compare
ECD_03731 -2.4 -4.7 TatABCE protein translocation system subunit compare
ECD_03818 -2.3 -3.0 essential cell division protein compare
ECD_03817 -2.3 -4.1 peptidase component of the HslUV protease compare
ECD_01084 -2.2 -6.0 DUF177 family protein compare
ECD_00142 -2.2 -4.9 poly(A) polymerase compare
ECD_03624 -2.2 -10.2 16S rRNA m(7)G527 methyltransferase, SAM-dependent; glucose-inhibited cell-division protein compare
ECD_00626 -2.2 -4.9 putative ion transport compare
ECD_01122 -2.1 -2.5 spermidine/putrescine ABC transporter permease compare
ECD_00342 -2.1 -4.5 nucleoid-associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function compare
ECD_04259 -2.1 -4.2 phosphopentomutase compare
ECD_01124 -2.1 -3.1 spermidine/putrescine ABC transporter ATPase compare
ECD_03848 -2.1 -7.3 transcriptional repressor of fabA and fabB compare
ECD_00053 -2.0 -3.1 diadenosine tetraphosphatase compare
ECD_02244 -1.9 -3.3 putative semialdehyde dehydrogenase compare
ECD_00574 -1.9 -4.3 alkyl hydroperoxide reductase, C22 subunit compare
ECD_00487 -1.8 -1.2 Excisionase compare
ECD_02409 -1.8 -9.6 dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent compare
ECD_03729 -1.8 -1.4 TatABCE protein translocation system subunit compare
ECD_02736 -1.8 -4.5 glycine cleavage complex lipoylprotein compare
ECD_00206 -1.8 -9.4 putative S-adenosyl-L-methionine-dependent methyltransferase compare
ECD_01081 -1.8 -2.7 uncharacterized protein compare
ECD_01972 -1.7 -3.2 uridine/cytidine kinase compare
ECD_03660 -1.7 -0.9 rho operon leader peptide compare
ECD_01827 -1.7 -5.3 murein DD-endopeptidase, space-maker hydrolase, septation protein compare
ECD_00006 -1.6 -5.4 peroxide resistance protein, lowers intracellular iron compare
ECD_01793 -1.6 -3.7 stress protein, member of the CspA-family compare
ECD_01794 -1.6 -5.1 DUF2527 family heat-induced protein compare
ECD_03625 -1.6 -1.1 5-methylaminomethyl-2-thiouridine modification at tRNA U34 compare
ECD_03134 -1.6 -6.4 ssDNA-binding protein, function unknown compare
ECD_02548 -1.6 -3.5 regulatory protein for RecA compare
ECD_00950 -1.5 -1.7 FtsZ stabilizer compare
ECD_03005 -1.5 -2.0 N-acetylgalactosamine-specific enzyme IIB component of PTS compare
ECD_02899 -1.5 -1.6 inner membrane protein compare
ECD_00509 -1.5 -2.3 DLP12 prophage; putative lipoprotein compare
ECD_00418 -1.4 -2.5 primosomal replication protein N'' compare
ECD_02622 -1.4 -3.6 7-carboxy-7-deazaguanine synthase; queosine biosynthesis compare
ECD_02239 -1.4 -1.4 membrane-anchored periplasmic protein involved in septation compare
ECD_01121 -1.4 -4.9 spermidine/putrescine ABC transporter periplasmic binding protein compare
ECD_03556 -1.4 -1.5 ilvB operon leader peptide compare
ECD_00993 -1.4 -1.2 cold shock gene compare
ECD_02116 -1.3 -4.4 spermidine nucleoid-associated protein compare
ECD_01159 -1.3 -1.7 translesion error-prone DNA polymerase V subunit; DNA polymerase activity compare
ECD_00354 -1.3 -4.8 tRNA-guanine transglycosylase compare
ECD_04357 -1.3 -4.3 small predicted membrane protein compare
ECD_03016 -1.3 -3.1 DnaA initiator-associating factor for replication initiation compare
ECD_02826 -1.3 -1.1 hypothetical protein compare
ECD_01039 -1.3 -1.5 curlin subunit, amyloid curli fibers, cryptic compare
ECD_02996 -1.3 -4.5 transcriptional repressor of the aga regulon compare
ECD_02401 -1.3 -3.8 exonuclease VII, large subunit compare
ECD_04354 -1.3 -2.7 nucleoid-associated oriC-binding protein; H-NS and StpA stabilizing factor compare
ECD_01749 -1.3 -1.5 D-hexose-6-phosphate epimerase-like protein compare
ECD_01405 -1.3 -1.8 methionine N-acyltransferase; L-amino acid N-acyltransferase compare
ECD_00322 -1.3 -1.3 putative transcriptional regulator compare
ECD_02820 -1.2 -1.3 hypothetical protein compare
ECD_02655 -1.2 -3.6 L-fucose mutarotase compare
ECD_02335 -1.2 -2.6 N-acetylmuramoyl-l-alanine amidase I compare
ECD_03097 -1.2 -3.8 l-arginine-responsive arginine metabolism regulon transcriptional regulator compare
ECD_02661 -1.2 -3.0 cysteine sulfinate desulfinase compare
ECD_04265 -1.2 -5.3 DNA repair protein compare
ECD_01557 -1.2 -1.9 S- and N-oxide reductase, A subunit, periplasmic compare
ECD_00998 -1.2 -2.0 response regulator in two-component regulatory system with TorS compare
ECD_02607 -1.2 -1.2 phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent compare
ECD_02858 -1.2 -5.0 hypothetical protein compare
ECD_03093 -1.2 -1.6 DUF1043 family inner membrane-anchored protein compare
ECD_02869 -1.1 -2.1 maturation protease for hydrogenase 2 compare
ECD_01878 -1.1 -3.6 excinuclease UvrABC, endonuclease subunit compare
ECD_03801 -1.1 -5.9 6-phosphofructokinase I compare
ECD_00836 -1.1 -0.9 putative Regulatory protein compare
ECD_02470 -1.1 -3.8 ATP-dependent RNA helicase compare
ECD_03685 -1.1 -0.8 diaminopimelate epimerase compare
ECD_00303 -1.1 -3.1 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase compare
ECD_03498 -1.1 -4.6 nucleoid occlusion factor, anti-FtsZ division inhibitor compare
ECD_03458 -1.1 -3.8 ribosome-associated DUF2810 family protein compare
ECD_t00019 -1.1 -0.6 tRNA-Lys compare
ECD_00923 -1.1 -3.0 protein kinase-like domain protein compare
ECD_01312 -1.1 -1.7 O-6-alkylguanine-DNA:cysteine-protein methyltransferase compare
ECD_01852 -1.1 -1.6 chemotaxis regulator, protein phosphatase for CheY compare
ECD_03643 -1.1 -5.5 UPF0438 family protein compare
ECD_02851 -1.1 -6.6 putative saframycin Mx1 synthetase B compare
ECD_04030 -1.1 -0.9 phosphatidylserine decarboxylase compare
ECD_03929 -1.1 -2.4 DUF419 family protein compare
ECD_00380 -1.0 -1.0 cytochrome o ubiquinol oxidase subunit IV compare
ECD_02737 -1.0 -4.6 aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex compare
ECD_02105 -1.0 -4.6 murein DD-endopeptidase, space-maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD-carboxypeptidase compare
ECD_01621 -1.0 -1.4 glyoxalase I, Ni-dependent compare
ECD_01906 -1.0 -1.0 hypothetical protein compare
ECD_00438 -1.0 -0.9 copper-responsive regulon transcriptional regulator compare
ECD_02812 -1.0 -4.8 hypothetical protein compare
ECD_02919 -1.0 -2.0 motility and biofilm regulator compare
ECD_03677 -1.0 -5.3 putative protoheme IX synthesis protein compare
ECD_01696 -1.0 -1.2 2-deoxyglucose-6-P phosphatase compare
ECD_04039 -1.0 -1.6 global sRNA chaperone; HF-I, host factor for RNA phage Q beta replication compare
ECD_02853 -1.0 -2.8 hypothetical protein compare
ECD_03501 -1.0 -4.6 UPF0701 family protein compare
ECD_03983 -1.0 -6.3 sensory histidine kinase in two-component regulatory system with BasR compare
ECD_03623 -1.0 -2.3 ATP synthase, membrane-bound accessory factor compare
ECD_03846 -1.0 -5.6 oxidative and nitrosative stress transcriptional regulator compare
ECD_03500 -1.0 -2.8 ribonuclease PH compare
ECD_02857 -0.9 -0.7 hypothetical protein compare
ECD_01666 -0.9 -2.3 putative electron transfer flavoprotein subunit compare
ECD_02524 -0.9 -2.5 DUF2892 family inner membrane rhodanese compare
ECD_03412 -0.9 -3.1 uncharacterized protein compare
ECD_01241 -0.9 -1.0 putative RNA binding protein compare
ECD_01818 -0.9 -0.8 extracellular Colicin M immunity family protein compare
ECD_02815 -0.9 -4.6 Capsule polysaccharide export inner-membrane protein kpsE compare
ECD_04185 -0.9 -1.5 periplasmic chaperone compare
ECD_02889 -0.9 -1.9 septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts) compare
ECD_04121 -0.9 -2.2 protein inhibitor of RNase E compare
ECD_00004 -0.9 -3.3 L-threonine synthase compare
ECD_02070 -0.9 -2.1 UPF0299 family inner membrane protein compare
ECD_01103 -0.9 -1.5 beta N-acetyl-glucosaminidase compare
ECD_03659 -0.9 -0.8 thioredoxin 1 compare
ECD_02854 -0.9 -6.2 hypothetical protein compare
ECD_03238 -0.9 -2.6 D-ribulose-5-phosphate 3-epimerase compare
ECD_03642 -0.9 -4.8 flhDC operon transcriptional repressor compare
ECD_t00008 -0.9 -1.6 tRNA-Gln compare
ECD_01957 -0.9 -1.1 GDP-mannose mannosyl hydrolase compare
ECD_02258 -0.9 -1.4 putative fimbrial-like adhesin protein compare
ECD_02054 -0.9 -1.7 putative response regulator in two-component system withYehU compare
ECD_00081 -0.9 -3.1 transcriptional repressor-activator for carbon metabolism compare
ECD_03816 -0.9 -1.7 molecular chaperone and ATPase component of HslUV protease compare
ECD_00434 -0.9 -0.7 putative DNA-binding transcriptional regulator compare
ECD_04014 -0.9 -3.4 DUF4156 family lipoprotein compare
ECD_02817 -0.9 -5.7 KpsU protein compare
ECD_04250 -0.8 -5.3 peptide chain release factor RF-3 compare
ECD_03217 -0.8 -1.9 nitrite reductase (NADH) small subunit compare
ECD_01368 -0.8 -1.9 putative ATP-dependent helicase compare
ECD_02814 -0.8 -3.1 hypothetical protein compare
ECD_00423 -0.8 -2.7 gap repair protein compare
ECD_03023 -0.8 -1.3 GNAT family putative N-acetyltransferase compare
ECD_01058 -0.8 -1.7 dihydro-orotase compare
ECD_01293 -0.8 -2.7 putative family 65 glycosyl hydrolase compare
ECD_01593 -0.8 -0.8 putative oxidoreductase compare
ECD_02459 -0.8 -1.2 gap repair protein compare
ECD_03837 -0.8 -1.6 putative [formate-C-acetyltransferase 2]-activating enzyme; pyruvate formate-lyase 1-activating enzyme compare
ECD_04107 -0.8 -1.5 trehalose-6-P hydrolase compare
ECD_02346 -0.8 -2.1 aldehyde oxidoreductase, ethanolamine utilization protein compare
ECD_02938 -0.8 -4.4 G/U mismatch-specific DNA glycosylase; xanthine DNA glycosylase compare
ECD_02114 -0.8 -1.6 putative ATP-dependent DNA or RNA helicase compare
ECD_02268 -0.8 -4.8 long-chain fatty acid outer membrane transporter conserved
ECD_03509 -0.8 -3.4 ATP-dependent DNA helicase compare
ECD_03244 -0.8 -3.4 DNA catabolic protein compare
ECD_03647 -0.8 -4.1 acetolactate synthase 2 small subunit compare
ECD_00420 -0.8 -0.7 adenine phosphoribosyltransferase compare
ECD_02904 -0.8 -2.1 3',5' cAMP phosphodiesterase compare
ECD_02774 -0.8 -1.3 Zn-dependent metalloprotease-related protein compare
ECD_02914 -0.8 -3.0 BMFP family putative fusogenic protein compare
ECD_02819 -0.8 -4.3 KpsS protein compare
ECD_00501 -0.8 -1.3 uncharacterized protein, DLP12 prophage compare
ECD_01287 -0.8 -2.1 putative ABC sugar transporter periplasmic binding protein compare
ECD_02471 -0.8 -3.4 putative DNA-binding transcriptional regulator compare
ECD_02671 -0.8 -1.6 putative prepilin peptidase-dependent protein compare
ECD_02057 -0.8 -1.0 putative membrane protein compare
ECD_00838 -0.8 -2.1 putative phage tail protein compare
ECD_00185 -0.7 -2.0 putative lyase compare
ECD_02894 -0.7 -3.2 GCU-specific mRNA interferase toxin of the MqsR-MqsA toxin-antitoxin system; biofilm/motility regulator; anti-repressor compare
ECD_00492 -0.7 -0.5 hypothetical protein compare
ECD_01624 -0.7 -0.8 glutaredoxin-4 compare
ECD_02432 -0.7 -0.9 3-phenylpropionate dioxygenase, ferredoxin subunit compare
ECD_03219 -0.7 -2.6 fused siroheme synthase 1,3-dimethyluroporphyriongen III dehydrogenase and siroheme ferrochelatase/uroporphyrinogen methyltransferase compare
ECD_03246 -0.7 -3.2 DNA catabolic putative fimbrial assembly protein compare
ECD_03328 -0.7 -2.0 nickel ABC transporter ATPase compare
ECD_03612 -0.7 -4.5 phosphate ABC transporter periplasmic binding protein compare
ECD_03243 -0.7 -4.0 DNA catabolic putative fimbrial transporter compare
ECD_03897 -0.7 -2.6 glucosephosphate isomerase compare
ECD_02366 -0.7 -2.8 elongator methionine tRNA (ac4C34) acetyltransferase compare
ECD_02610 -0.7 -4.1 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) compare
ECD_01657 -0.7 -1.8 UPF0118 family inner membrane protein compare
ECD_02908 -0.7 -2.5 hypothetical protein compare
ECD_01101 -0.7 -1.2 OM lipoprotein stimulator of MrcB transpeptidase compare
ECD_02855 -0.7 -4.3 hypothetical protein compare
ECD_00702 -0.7 -3.0 periplasmic TolA-binding protein compare
ECD_00585 -0.7 -1.0 citrate lyase, acyl carrier (gamma) subunit compare
ECD_02798 -0.7 -3.6 hypothetical protein compare
ECD_00467 -0.7 -2.4 ureidoglycolate dehydrogenase compare
ECD_02377 -0.7 -1.2 hydrogenase 4, membrane subunit compare
ECD_03375 -0.7 -4.3 putative periplasmic M16 family chaperone compare
ECD_00496 -0.7 -0.9 DLP12 prophage; putative DNA-binding transcriptional regulator compare
ECD_00483 -0.7 -1.4 FimA-like protein compare
ECD_01352 -0.7 -1.6 fermentative D-lactate dehydrogenase, NAD-dependent compare


Specific Phenotypes

None in this experiment

For Escherichia coli BL21 in phage experiments

For phage MOI 10 across organisms