Experiment set6S114 for Escherichia coli BL21

Compare to:

Bas27

200 most important genes:

  gene name fitness t score description  
ECD_03355 -4.4 -2.3 Putative LuxR family repressor for dicarboxylate transport compare
ECD_03556 -3.8 -2.8 ilvB operon leader peptide compare
ECD_01826 -2.9 -3.4 myristoyl-acyl carrier protein (ACP)-dependent acyltransferase compare
ECD_02205 -2.7 -4.8 NADH:ubiquinone oxidoreductase, membrane subunit J compare
ECD_00634 -2.7 -4.4 N-acetylglucosamine-6-phosphate deacetylase compare
ECD_02507 -2.7 -2.5 toxic UPF0083 family protein inhibitor of 70S ribosome formation compare
ECD_02207 -2.6 -4.2 NADH:ubiquinone oxidoreductase, membrane subunit H compare
ECD_01691 -2.6 -2.8 acid-inducible putative outer membrane protein compare
ECD_03590 -2.5 -2.9 tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase compare
ECD_02206 -2.4 -3.6 NADH:ubiquinone oxidoreductase, chain I compare
ECD_03625 -2.3 -6.0 5-methylaminomethyl-2-thiouridine modification at tRNA U34 compare
ECD_00807 -2.2 -1.6 deoxyribose-5-phosphate-inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx compare
ECD_02404 -2.2 -2.5 BamABCDE complex OM biogenesis lipoprotein compare
ECD_02203 -2.1 -6.1 NADH:ubiquinone oxidoreductase, membrane subunit L compare
ECD_02201 -2.1 -6.6 NADH:ubiquinone oxidoreductase, membrane subunit N compare
ECD_03692 -2.1 -6.2 magnesium/nickel/cobalt transporter compare
ECD_02209 -2.0 -5.4 NADH:ubiquinone oxidoreductase, chain F compare
ECD_02549 -2.0 -8.4 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor compare
ECD_02399 -2.0 -4.3 GMP synthetase (glutamine aminotransferase) compare
ECD_03488 -1.9 -3.2 UDP-glucose:(heptosyl)lipopolysaccharide alpha-1,3-glucosyltransferase; lipopolysaccharide core biosynthesis protein; lipopolysaccharide glucosyltransferase I compare
ECD_03096 -1.8 -3.0 malate dehydrogenase, NAD(P)-binding compare
ECD_03314 -1.8 -3.6 16S rRNA m(2)G966 methyltransferase, SAM-dependent compare
ECD_00054 -1.8 -2.5 protein associated with Co2+ and Mg2+ efflux compare
ECD_02211 -1.7 -5.6 NADH:ubiquinone oxidoreductase, fused CD subunit compare
ECD_02208 -1.7 -6.7 NADH:ubiquinone oxidoreductase, chain G compare
ECD_01489 -1.7 -2.8 transcriptional repressor of multiple antibiotic resistance compare
ECD_02470 -1.7 -5.3 ATP-dependent RNA helicase compare
ECD_02820 -1.7 -1.7 hypothetical protein compare
ECD_02210 -1.6 -3.1 NADH:ubiquinone oxidoreductase, chain E compare
ECD_00933 -1.6 -4.1 outer membrane porin 1a (Ia compare
ECD_03509 -1.6 -5.2 ATP-dependent DNA helicase compare
ECD_03037 -1.6 -3.9 ribosome maturation factor for 30S subunits compare
ECD_02202 -1.5 -3.4 NADH:ubiquinone oxidoreductase, membrane subunit M compare
ECD_04038 -1.5 -1.8 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase compare
ECD_00684 -1.4 -2.7 succinate dehydrogenase, FeS subunit compare
ECD_03121 -1.4 -1.3 putative membrane protein compare
ECD_03036 -1.4 -3.1 transcription termination/antitermination L factor compare
ECD_03132 -1.4 -2.0 dehydroshikimate reductase, NAD(P)-binding compare
ECD_03659 -1.4 -1.2 thioredoxin 1 compare
ECD_04093 -1.4 -2.6 GGCT-like protein compare
ECD_03685 -1.4 -0.9 diaminopimelate epimerase compare
ECD_02250 -1.4 -1.4 uncharacterized protein compare
ECD_01852 -1.4 -1.8 chemotaxis regulator, protein phosphatase for CheY compare
ECD_03752 -1.3 -7.1 coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen-independent compare
ECD_03797 -1.3 -4.3 sensory histidine kinase in two-component regulatory system with CpxR compare
ECD_03238 -1.3 -2.8 D-ribulose-5-phosphate 3-epimerase compare
ECD_03119 -1.3 -1.8 global DNA-binding transcriptional dual regulator compare
ECD_01835 -1.3 -1.5 UPF0082 family protein compare
ECD_00333 -1.3 -4.2 pyrroline-5-carboxylate reductase, NAD(P)-binding compare
ECD_00081 -1.3 -3.9 transcriptional repressor-activator for carbon metabolism compare
ECD_01879 -1.3 -1.4 response regulator in two-component regulatory system with BarA compare
ECD_01954 -1.3 -1.5 phosphomannomutase compare
ECD_02212 -1.2 -4.2 NADH:ubiquinone oxidoreductase, chain B compare
ECD_02738 -1.2 -1.8 2-octaprenylphenol hydroxylase, FAD-dependent compare
ECD_02204 -1.2 -1.1 NADH:ubiquinone oxidoreductase, membrane subunit K compare
ECD_01675 -1.2 -3.0 UPF0061 family protein compare
ECD_01216 -1.2 -2.2 UPF0056 family inner membrane protein compare
ECD_01104 -1.2 -1.6 putative UPF0227 family esterase compare
ECD_00053 -1.2 -2.5 diadenosine tetraphosphatase compare
ECD_00993 -1.2 -1.2 cold shock gene compare
ECD_00680 -1.2 -4.0 citrate synthase compare
ECD_00388 -1.2 -3.4 proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases compare
ECD_02122 -1.2 -2.0 periplasmic thioredoxin of cytochrome c-type biogenesis compare
ECD_01645 -1.2 -2.0 pyruvate kinase I compare
ECD_01353 -1.1 -1.7 putative membrane-anchored protein, function unknown compare
ECD_01482 -1.1 -1.7 succinate semialdehyde dehydrogenase, NAD(P)+-dependent compare
ECD_04193 -1.1 -1.6 fructuronate-inducible hexuronate regulon transcriptional repressor; autorepressor compare
ECD_t00077 -1.1 -1.1 tRNA-Thr compare
ECD_02944 -1.1 -5.7 transcriptional repressor compare
ECD_00683 -1.1 -2.8 succinate dehydrogenase, flavoprotein subunit compare
ECD_01230 -1.1 -1.6 outer membrane protein W compare
ECD_03735 -1.1 -4.1 NAD(P)H-flavin reductase compare
ECD_03731 -1.1 -2.5 TatABCE protein translocation system subunit compare
ECD_02946 -1.1 -2.1 evolved beta-D-galactosidase, beta subunit; cupin superfamily compare
ECD_00682 -1.1 -2.5 succinate dehydrogenase, membrane subunit, binds cytochrome b556 compare
ECD_01625 -1.1 -2.5 murein DD-endopeptidase, space-maker hydrolase compare
ECD_00774 -1.1 -1.5 23S rRNA m(6)A1618 methyltransferase, SAM-dependent compare
ECD_02584 -1.1 -1.8 serine/threonine-specific protein phosphatase 2 compare
ECD_00420 -1.0 -1.5 adenine phosphoribosyltransferase compare
ECD_00487 -1.0 -1.5 Excisionase compare
ECD_01084 -1.0 -3.6 DUF177 family protein compare
ECD_00423 -1.0 -3.2 gap repair protein compare
ECD_04045 -1.0 -3.4 nitric oxide-sensitive repressor for NO regulon compare
ECD_02765 -1.0 -3.2 transketolase 1, thiamine triphosphate-binding compare
ECD_t00011 -1.0 -1.7 tRNA-Gln compare
ECD_00361 -1.0 -2.7 Nrd regulon repressor compare
ECD_03339 -1.0 -3.0 hypothetical protein compare
ECD_00001 -1.0 -2.3 thr operon leader peptide compare
ECD_00098 -1.0 -1.6 regulator of secA translation compare
ECD_00574 -1.0 -3.0 alkyl hydroperoxide reductase, C22 subunit compare
ECD_02320 -1.0 -2.6 WGR domain protein compare
ECD_01168 -1.0 -1.0 lytic murein endotransglycosylase E compare
ECD_02740 -1.0 -4.4 proline aminopeptidase P II compare
ECD_02508 -1.0 -1.4 tmRNA-binding trans-translation protein compare
ECD_01739 -1.0 -2.2 putative DNA-binding transcriptional regulator compare
ECD_04293 -1.0 -2.2 inhibitor of glucose uptake compare
ECD_00484 -0.9 -2.1 FimA-like protein compare
ECD_03455 -0.9 -5.6 mannitol-1-phosphate dehydrogenase, NAD-dependent compare
ECD_01111 -0.9 -1.5 inner membrane protein compare
ECD_01039 -0.9 -1.4 curlin subunit, amyloid curli fibers, cryptic compare
ECD_03046 -0.9 -2.3 transcript cleavage factor compare
ECD_00032 -0.9 -1.1 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) compare
ECD_01034 -0.9 -1.2 curli production assembly/transport outer membrane lipoprotein compare
ECD_02557 -0.9 -6.2 sorbitol-inducible srl operon transcriptional repressor compare
ECD_00633 -0.9 -2.5 N-acetylglucosamine-inducible nag divergent operon transcriptional repressor compare
ECD_03756 -0.9 -5.1 GTP-binding protein compare
ECD_03075 -0.9 -2.8 aerobic respiration control sensor histidine protein kinase, cognate to two-component response regulators ArcA and RssB compare
ECD_04024 -0.9 -1.1 fumarate reductase (anaerobic), membrane anchor subunit compare
ECD_00006 -0.9 -3.4 peroxide resistance protein, lowers intracellular iron compare
ECD_02670 -0.9 -1.5 exonuclease V (RecBCD complex), gamma chain compare
ECD_02726 -0.9 -2.7 site-specific tyrosine recombinase compare
ECD_02097 -0.9 -2.5 fructose-1-phosphate kinase compare
ECD_01481 -0.8 -2.1 glutaminase 2 compare
ECD_01312 -0.8 -1.6 O-6-alkylguanine-DNA:cysteine-protein methyltransferase compare
ECD_03086 -0.8 -1.7 sialic acid-inducible nan operon repressor compare
ECD_00956 -0.8 -0.6 DUF330 family putative lipoprotein compare
ECD_03687 -0.8 -1.0 site-specific tyrosine recombinase compare
ECD_00026 -0.8 -1.5 hypothetical protein compare
ECD_01910 -0.8 -1.6 UPF0265 family protein compare
ECD_02135 -0.8 -2.1 ferredoxin-type protein, role in electron transfer to periplasmic nitrate reductase NapA compare
ECD_02998 -0.8 -1.0 N-acetylgalactosamine-specific enzyme IIB component of PTS compare
ECD_01240 -0.8 -1.7 PHP domain protein compare
ECD_02961 -0.8 -3.5 uronate isomerase compare
ECD_01250 -0.8 -1.5 DNA topoisomerase I, omega subunit compare
ECD_03256 -0.8 -3.7 sensory histidine kinase in two-component regulatory system with OmpR compare
ECD_04354 -0.8 -2.4 nucleoid-associated oriC-binding protein; H-NS and StpA stabilizing factor compare
ECD_03897 -0.8 -2.8 glucosephosphate isomerase compare
ECD_04070 -0.8 -1.6 50S ribosomal subunit protein L9 compare
ECD_01241 -0.8 -1.2 putative RNA binding protein compare
ECD_00335 -0.8 -1.6 shikimate kinase II compare
ECD_02463 -0.8 -2.4 back-translocating elongation factor EF4, GTPase compare
ECD_00612 -0.8 -1.2 DUF1451 family protein compare
ECD_01786 -0.8 -1.7 putative membrane protein/conserved protein compare
ECD_02539 -0.8 -4.5 transcriptional repressor of microcin B17 synthesis and multidrug efflux compare
ECD_01575 -0.8 -1.2 dihydromonapterin reductase, NADPH-dependent; dihydrofolate reductase isozyme compare
ECD_03489 -0.7 -4.1 lipopolysaccharide core biosynthesis protein compare
ECD_02622 -0.7 -1.6 7-carboxy-7-deazaguanine synthase; queosine biosynthesis compare
ECD_03801 -0.7 -4.3 6-phosphofructokinase I compare
ECD_03257 -0.7 -1.5 response regulator in two-component regulatory system with EnvZ compare
ECD_03813 -0.7 -1.5 FtsZ stabilizer, septal ring assembly factor, cell division stimulator compare
ECD_00389 -0.7 -2.9 ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease compare
ECD_03727 -0.7 -1.3 aerobic ubiquinone synthesis protein, SCP2 family protein compare
ECD_00960 -0.7 -1.1 Ter macrodomain organizer matS-binding protein compare
ECD_02746 -0.7 -1.3 hypothetical protein compare
ECD_03029 -0.7 -3.0 ATP-dependent RNA helicase compare
ECD_01586 -0.7 -1.2 beta-D-glucuronidase compare
ECD_00015 -0.7 -2.6 chaperone Hsp40, DnaK co-chaperone compare
ECD_00940 -0.7 -1.1 aliphatic sulfonate ABC transporter periplasmic binding protein compare
ECD_02951 -0.7 -0.8 antitoxinof the HigB-HigA toxin-antitoxin system compare
ECD_03653 -0.7 -1.7 peptidyl-prolyl cis-trans isomerase C (rotamase C) compare
ECD_00831 -0.7 -1.5 retron EC86 RNA-directed DNA polymerase-like protein compare
ECD_02484 -0.7 -3.1 23S rRNA pseudouridine(1911,1915,1917) synthase compare
ECD_00704 -0.7 -0.9 nicotinamide riboside transporter compare
ECD_03070 -0.7 -3.0 adaptor protein for GlmZ/GlmY sRNA decay, glucosamine-6-phosphate-regulated; NTPase compare
ECD_02729 -0.7 -1.6 flavinator of succinate dehydrogenase; antitoxin of CptAB toxin-antitoxin pair compare
ECD_00165 -0.7 -2.4 uridylyltransferase compare
ECD_00082 -0.7 -1.1 RsmH methytransferase inhibitor compare
ECD_01399 -0.7 -1.2 putative ABC transporter permease compare
ECD_03056 -0.7 -2.5 ABC transporter maintaining OM lipid asymmetry, cytoplasmic STAS component compare
ECD_04051 -0.7 -1.2 UPF0719 family inner membrane protein compare
ECD_00100 -0.7 -2.6 dGTP-preferring nucleoside triphosphate pyrophosphohydrolase compare
ECD_00366 -0.7 -1.5 phosphatidylglycerophosphatase A compare
ECD_03358 -0.7 -0.8 stress response protein acid-resistance protein compare
ECD_03486 -0.7 -2.4 UDP-glucose:(Glucosyl) LPS alpha1,3-glucosyltransferase WaaO compare
ECD_02767 -0.7 -3.3 agmatinase compare
ECD_00870 -0.7 -1.5 lipoprotein compare
ECD_04030 -0.7 -0.8 phosphatidylserine decarboxylase compare
ECD_01893 -0.7 -2.0 shikimate transporter compare
ECD_00970 -0.7 -1.8 heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA-binding protein compare
ECD_01946 -0.7 -1.2 dTDP-L-rhamnose synthase, NAD(P)-dependent dTDP-4-dehydrorhamnose reductase subunit compare
ECD_03817 -0.7 -1.4 peptidase component of the HslUV protease compare
ECD_02889 -0.7 -2.7 septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts) compare
ECD_01033 -0.7 -1.4 DUF1097 family inner membrane protein compare
ECD_00707 -0.7 -1.3 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible compare
ECD_02365 -0.6 -1.2 palmitoyl-CoA esterase activity, uncertain physiological substrate compare
ECD_03266 -0.6 -2.8 Fe/S biogenesis protein, putative scaffold/chaperone protein compare
ECD_01804 -0.6 -1.6 inner membrane PqiA domain protein compare
ECD_00014 -0.6 -1.7 chaperone Hsp70, with co-chaperone DnaJ compare
ECD_01188 -0.6 -1.2 SIRB family inner membrane protein compare
ECD_01221 -0.6 -1.4 oligopeptide ABC transporter ATPase compare
ECD_04265 -0.6 -3.3 DNA repair protein compare
ECD_00048 -0.6 -1.7 putative 4Fe-4S ferredoxin-type protein compare
ECD_01174 -0.6 -1.5 dihydroxyacetone kinase, C-terminal domain compare
ECD_00150 -0.6 -1.9 iron(3+)-hydroxamate import ABC transporter ATPase compare
ECD_01425 -0.6 -1.5 nitrate reductase 2 (NRZ), beta subunit compare
ECD_01479 -0.6 -0.9 putative membrane-bound diguanylate cyclase compare
ECD_02907 -0.6 -2.7 transport channel compare
ECD_00242 -0.6 -1.3 moco insertion factor for PaoABC aldehyde oxidoreductase compare
ECD_02724 -0.6 -3.9 ssDNA exonuclease, 5 compare
ECD_00300 -0.6 -2.3 mhp operon transcriptional activator compare
ECD_03021 -0.6 -1.1 UPF0306 family protein compare
ECD_03342 -0.6 -2.7 phosphate transporter, low-affinity; tellurite importer compare
ECD_03920 -0.6 -1.2 uncharacterized protein compare
ECD_00688 -0.6 -2.2 succinyl-CoA synthetase, NAD(P)-binding, alpha subunit compare
ECD_00984 -0.6 -2.2 tyrosine-protein kinase, role in O-antigen capsule formation compare
ECD_00481 -0.6 -1.2 putative periplasmic pilus chaperone compare
ECD_02742 -0.6 -2.3 FtsZ stabilizer compare
ECD_01601 -0.6 -0.7 SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport complex compare
ECD_t00038 -0.6 -1.0 tRNA-Arg compare
ECD_02423 -0.6 -2.4 isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor compare


Specific Phenotypes

None in this experiment

For Escherichia coli BL21 in phage experiments

For phage MOI 10 across organisms