Experiment set6S108 for Escherichia coli BL21

Compare to:

Bas63

200 most detrimental genes:

  gene name fitness t score description  
ECD_02042 +2.2 3.1 DUF2574 family protein compare
ECD_00450 +1.6 2.6 conserved protein, rhs-like protein compare
ECD_01897 +1.5 1.7 ssuEADCB/tauABCD operon transcriptional activator compare
ECD_01928 +1.4 2.0 phosphoribosyl-AMP cyclohydrolase and phosphoribosyl-ATP pyrophosphatase compare
ECD_04212 +1.2 1.7 5-methylcytosine-specific restriction enzyme McrBC, subunit McrB compare
ECD_01375 +1.1 1.6 putative periplasmic protein compare
ECD_00938 +1.1 2.5 aliphatic sulfonate ABC transporter permease compare
ECD_02122 +1.1 2.4 periplasmic thioredoxin of cytochrome c-type biogenesis compare
ECD_00494 +1.1 2.3 DLP12 prophage; putative recombinase compare
ECD_02280 +1.1 1.9 hybrid sensory histidine kinase in two-component regulatory system with EvgA compare
ECD_01599 +1.1 1.7 SoxR iron-sulfur cluster reduction factor component; putative membrane-associated NADH oxidoreductase of electron transport complex compare
ECD_01427 +1.1 2.3 nitrate/nitrite transporter compare
ECD_00492 +1.1 1.5 hypothetical protein compare
ECD_01404 +1.1 2.5 DUF606 family inner membrane protein compare
ECD_01624 +1.0 2.2 glutaredoxin-4 compare
ECD_01879 +1.0 1.3 response regulator in two-component regulatory system with BarA compare
ECD_01561 +1.0 1.8 H(+)/Cl(-) exchange transporter compare
ECD_03695 +1.0 1.4 Magnesium and cobalt transport protein corA compare
ECD_00930 +1.0 2.3 M15A protease-related family periplasmic protein compare
ECD_03541 +1.0 2.1 hypothetical protein compare
ECD_03121 +0.9 0.9 putative membrane protein compare
ECD_04308 +0.9 2.4 uncharacterized protein compare
ECD_02825 +0.9 1.4 Pyrophosphorylase compare
ECD_01138 +0.9 2.1 anti-repressor for YcgE, blue light-responsive; FAD-binding; inactive c-di-GMP phosphodiesterase-like EAL domain protein compare
ECD_02348 +0.9 1.8 ethanolamine utilization protein, putative carboxysome structural protein compare
ECD_01979 +0.9 2.6 multidrug efflux system, subunit A compare
ECD_01614 +0.9 2.2 putative membrane fusion protein (MFP) of YdhJK efflux pump compare
ECD_01498 +0.9 1.4 NADP-dependent 3-hydroxy acid dehydrogenase; malonic semialdehyde reductase compare
ECD_00021 +0.8 1.5 putative usher protein compare
ECD_03774 +0.8 2.1 CopG family putative transcriptional regulator compare
ECD_03645 +0.8 1.9 ilvG operon leader peptide compare
ECD_01844 +0.8 2.5 TMAO reductase III (TorYZ), cytochrome c-type subunit compare
ECD_01388 +0.8 1.2 lipoprotein compare
ECD_01577 +0.8 0.9 response regulator of RstAB two-component system compare
ECD_01865 +0.8 2.3 trehalose-6-phosphate synthase compare
ECD_02920 +0.8 1.9 DUF1449 family inner membrane protein compare
ECD_02382 +0.7 2.0 putative processing element hydrogenase 4 compare
ECD_03867 +0.7 2.2 thiamine biosynthesis ThiGH complex subunit compare
ECD_00956 +0.7 1.2 DUF330 family putative lipoprotein compare
ECD_02064 +0.7 1.3 D-alanyl-D-alanine endopeptidase compare
ECD_03383 +0.7 4.9 DUF2629 family protein compare
ECD_01694 +0.7 1.6 fructosamine kinase family protein compare
ECD_00596 +0.7 1.5 TatABCE protein translocation system subunit compare
ECD_01032 +0.7 1.3 redox enzyme maturation protein (REMP) chaperone for YcdX compare
ECD_04123 +0.7 1.3 DUF898 family inner membrane protein compare
ECD_01109 +0.7 1.0 L,D-transpeptidase linking Lpp to murein compare
ECD_00811 +0.7 1.9 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase; pyrimidine phosphatase; riboflavin synthesis compare
ECD_02250 +0.7 1.0 uncharacterized protein compare
ECD_02431 +0.7 2.1 3-phenylpropionate dioxygenase, small (beta) subunit compare
ECD_01396 +0.7 1.2 putative DNA-binding transcriptional regulator and putative aminotransferase compare
ECD_04392 +0.7 2.1 uncharacterized protein compare
ECD_03671 +0.6 1.6 TDP-Fuc4NAc:lipidIIFuc4NAc transferase compare
ECD_00247 +0.6 2.6 UPF0153 cysteine cluster protein compare
ECD_01830 +0.6 1.8 zinc ABC transporter permease compare
ECD_04049 +0.6 1.1 PspA/IM30 family protein compare
ECD_01235 +0.6 1.7 tryptophan synthase, beta subunit compare
ECD_03520 +0.6 3.0 hypothetical protein compare
ECD_03357 +0.6 0.9 acid-resistance protein compare
ECD_00617 +0.6 2.4 ribonucleoside hydrolase 1 compare
ECD_01198 +0.6 1.5 putative invasin compare
ECD_02017 +0.6 1.9 galactitol-1-phosphate dehydrogenase, Zn-dependent and NAD(P)-binding compare
ECD_01486 +0.6 1.1 UPF0056 family inner membrane protein compare
ECD_00513 +0.6 2.1 hypothetical protein compare
ECD_02254 +0.6 1.3 chorismate synthase compare
ECD_03752 +0.6 4.6 coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen-independent compare
ECD_02046 +0.6 2.7 DUF4132 domain-containing protein compare
ECD_01126 +0.6 1.6 50S ribosomal protein L16 arginine hydroxylase; 2-oxoglutarate oxygenase compare
ECD_02081 +0.6 1.4 DUF418 family putative inner membrane protein compare
ECD_01835 +0.6 1.0 UPF0082 family protein compare
ECD_00742 +0.6 1.7 biotin synthase compare
ECD_00420 +0.6 0.6 adenine phosphoribosyltransferase compare
ECD_04251 +0.6 2.2 salt-inducible putative ABC transporter periplasmic binding protein compare
ECD_03385 +0.6 3.5 DUF2636 family cellulose production small membrane protein compare
ECD_00490 +0.6 2.0 putative DNA N-6-adenine-methyltransferase of bacteriophage compare
ECD_04142 +0.6 1.5 GFO/IDH/MOCA family putative oxidoreductase NAD(P)-dependent compare
ECD_04184 +0.6 1.5 fimbrial protein involved in type 1 pilus biosynthesis compare
ECD_01379 +0.6 1.1 putative DNA-binding transcriptional regulator compare
ECD_01043 +0.6 1.8 stationary phase cardiolipin synthase 3 compare
ECD_01773 +0.6 1.0 putative YeaWX dioxygenase beta subunit, reductase component compare
ECD_03300 +0.6 2.4 sn-glycerol-3-phosphate ABC transporter permease compare
ECD_00452 +0.6 2.0 putative DNA-binding transcriptional regulator compare
ECD_03877 +0.6 1.4 HU, DNA-binding transcriptional regulator, alpha subunit compare
ECD_00941 +0.6 1.1 NAD(P)H-dependent FMN reductase compare
ECD_00026 +0.6 2.2 hypothetical protein compare
ECD_02052 +0.6 1.4 lipoprotein, DUF1307 family compare
ECD_01693 +0.6 1.2 uncharacterized protein compare
ECD_01022 +0.6 1.5 ATP-binding protein; putative PhoH family P-loop ATPase compare
ECD_02915 +0.6 1.1 putative fimbrial-like adhesin protein compare
ECD_01692 +0.6 1.3 6-phosphofructokinase II compare
ECD_01012 +0.6 0.9 putative reactive intermediate detoxifying aminoacrylate hydrolase compare
ECD_01262 +0.6 1.6 cyclic-di-GMP phosphodiesterase; csgD regulator; modulator of RNase II stability compare
ECD_01591 +0.6 1.4 PLP-dependent beta-cystathionase and maltose regulon regulator compare
ECD_00585 +0.5 1.3 citrate lyase, acyl carrier (gamma) subunit compare
ECD_04303 +0.5 1.0 KGG family protein compare
ECD_02100 +0.5 1.5 UPF0153 cysteine cluster protein compare
ECD_01320 +0.5 1.4 ATP-dependent RNA helicase, specific for 23S rRNA compare
ECD_01760 +0.5 1.3 putative MFS transporter, inner membrane protein compare
ECD_04048 +0.5 1.3 DUF2170 family protein compare
ECD_03928 +0.5 3.0 thiamine phosphate synthase compare
ECD_02031 +0.5 2.0 hydroxy-methylpyrimidine kinase and hydroxy-phosphomethylpyrimidine kinase compare
ECD_02862 +0.5 2.3 putative ATP-binding protein compare
ECD_02440 +0.5 1.6 putative sugar ABC transporter periplasmic binding protein compare
ECD_01529 +0.5 1.3 Qin prophage; uncharacterized protein compare
ECD_04371 +0.5 1.4 DUF2387 family putative metal-binding protein compare
ECD_00278 +0.5 1.9 carbamate kinase-like protein compare
ECD_03966 +0.5 1.9 ribose 1,5-bisphosphokinase compare
ECD_03017 +0.5 0.9 outer membrane lipoprotein compare
ECD_02918 +0.5 1.1 fimbrial protein compare
ECD_03358 +0.5 0.7 stress response protein acid-resistance protein compare
ECD_02828 +0.5 2.9 Polysialic acid transport protein kpsM compare
ECD_01220 +0.5 2.0 oligopeptide ABC transporter ATPase compare
ECD_00231 +0.5 1.5 peptide chain release factor 2 compare
ECD_01261 +0.5 0.9 global regulator of transcription; DeoR family compare
ECD_01651 +0.5 1.3 SufBCD Fe-S cluster assembly scaffold protein, ATP-binding protein compare
ECD_00335 +0.5 1.5 shikimate kinase II compare
ECD_00274 +0.5 1.2 ankyrin repeat protein compare
ECD_00981 +0.5 1.7 cytochrome bd-II oxidase, subunit I compare
ECD_00502 +0.5 1.0 DLP12 prophage; putative antitermination protein compare
ECD_01066 +0.5 1.9 export chaperone for FlgK and FlgL compare
ECD_02056 +0.5 1.3 transcriptional activator of csgD and csgBA compare
ECD_01390 +0.5 1.3 IS609 transposase B compare
ECD_03386 +0.5 3.8 DUF3260 family cellulose production inner membrane protein compare
ECD_00750 +0.5 1.5 molybdopterin biosynthesis, protein C compare
ECD_02189 +0.5 1.1 dihydroxynaphthoic acid synthetase compare
ECD_04177 +0.5 2.2 N-acetylneuraminic acid mutarotase compare
ECD_03530 +0.5 0.7 hypothetical protein compare
ECD_03729 +0.5 1.0 TatABCE protein translocation system subunit compare
ECD_04024 +0.5 0.7 fumarate reductase (anaerobic), membrane anchor subunit compare
ECD_02831 +0.5 2.2 putative type II secretion protein GspK compare
ECD_01629 +0.5 0.7 transcriptional repressor, hypoxanthine-binding compare
ECD_01869 +0.5 1.5 L-arabinose ABC transporter periplasmic binding protein compare
ECD_01489 +0.5 1.2 transcriptional repressor of multiple antibiotic resistance compare
ECD_00499 +0.5 1.1 DLP12 prophage; uncharacterized protein compare
ECD_01048 +0.5 0.9 multicopy suppressor of secY and secA compare
ECD_02163 +0.5 0.7 acid-inducible Kdo/WaaP family putative kinase compare
ECD_00181 +0.5 1.5 ribonuclease HII compare
ECD_00034 +0.5 2.3 ribonucleoside hydrolase 3 compare
ECD_00260 +0.5 1.1 reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide-dependent disulfide oxidoreductase family compare
ECD_01559 +0.5 1.2 oxidoreductase, membrane subunit compare
ECD_01218 +0.5 1.3 oligopeptide ABC transporter permease compare
ECD_01786 +0.5 1.3 putative membrane protein/conserved protein compare
ECD_t00008 +0.5 1.5 tRNA-Gln compare
ECD_02088 +0.5 1.7 endonuclease IV with intrinsic 3'-5' exonuclease activity compare
ECD_01876 +0.5 1.5 UPF0149 family protein compare
ECD_01589 +0.5 0.8 transcriptional repressor of Mal regulon compare
ECD_03093 +0.5 1.3 DUF1043 family inner membrane-anchored protein compare
ECD_02033 +0.5 0.6 hypothetical protein compare
ECD_01810 +0.5 1.5 DUF2511 family protein compare
ECD_04116 +0.5 1.9 c-di-GMP-binding biofilm dispersal mediator protein compare
ECD_00677 +0.5 1.7 putative periplasmic pilin chaperone compare
ECD_01789 +0.5 1.4 mannose-specific enzyme IID component of PTS compare
ECD_00532 +0.5 0.9 response regulator in two-component regulatory system with CusS compare
ECD_00988 +0.5 1.3 putative O-antigen capsule production periplasmic protein compare
ECD_01572 +0.4 0.9 pyridine nucleotide transhydrogenase, alpha subunit compare
ECD_01313 +0.4 1.3 p-aminobenzoyl-glutamate transporter; membrane protein compare
ECD_02045 +0.4 2.2 molybdate metabolism regulator compare
ECD_01969 +0.4 1.1 inner membrane protein compare
ECD_03501 +0.4 2.6 UPF0701 family protein compare
ECD_02167 +0.4 1.7 anaerobic sn-glycerol-3-phosphate dehydrogenase, large FAD/NAD(P)-binding subunit compare
ECD_00306 +0.4 2.0 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase, class I compare
ECD_04005 +0.4 2.1 putative transcriptional regulator compare
ECD_02075 +0.4 0.8 dihydropyrimidine dehydrogenase, NADH-dependent, subunit N compare
ECD_03508 +0.4 1.2 tRNA mG18-2'-O-methyltransferase, SAM-dependent compare
ECD_01275 +0.4 1.5 gamma-glutamyl-gamma-aminobutyrate hydrolase compare
ECD_01365 +0.4 0.8 putative esterase compare
ECD_02149 +0.4 1.3 acetyl-CoA:acetoacetyl-CoA transferase, beta subunit compare
ECD_00982 +0.4 1.3 cytochrome bd-II oxidase, subunit II compare
ECD_02071 +0.4 1.8 LrgB family inner membrane protein compare
ECD_03308 +0.4 0.8 PanD autocleavage accelerator, panothenate synthesis compare
ECD_00291 +0.4 2.0 cytosine/isoguanine deaminase compare
ECD_00226 +0.4 1.2 DNA polymerase IV compare
ECD_02284 +0.4 0.9 formyl-CoA transferase, NAD(P)-binding compare
ECD_02090 +0.4 1.2 nucleoside permease compare
ECD_00566 +0.4 1.7 DUF466 family protein compare
ECD_00137 +0.4 1.5 putative fimbrial-like adhesin protein compare
ECD_02392 +0.4 1.4 phosphoribosylglycinamide formyltransferase 1 compare
ECD_00412 +0.4 1.0 Hha toxicity attenuator; conjugation-related protein compare
ECD_03486 +0.4 1.7 UDP-glucose:(Glucosyl) LPS alpha1,3-glucosyltransferase WaaO compare
ECD_02322 +0.4 1.6 sulfate/thiosulfate transporter subunit compare
ECD_00280 +0.4 1.5 broad specificity NADPH-dependent aldehyde reductase, Zn-containing compare
ECD_04273 +0.4 1.4 putative periplasmic protein compare
ECD_00402 +0.4 0.7 nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB compare
ECD_03381 +0.4 3.5 cellulose synthase, catalytic subunit compare
ECD_01801 +0.4 2.6 carboxy-terminal protease for penicillin-binding protein 3 compare
ECD_00378 +0.4 0.8 hypothetical protein compare
ECD_02614 +0.4 2.6 putative flavoprotein compare
ECD_02105 +0.4 2.8 murein DD-endopeptidase, space-maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD-carboxypeptidase compare
ECD_00813 +0.4 0.6 transcriptional regulator of csgD and ybiJI; autoregulator compare
ECD_02919 +0.4 1.1 motility and biofilm regulator compare
ECD_02091 +0.4 1.0 ribonucleoside hydrolase 2 compare
ECD_03581 +0.4 1.5 DUF937 family protein compare
ECD_03384 +0.4 2.9 cellulose production protein compare
ECD_01842 +0.4 0.8 tRNA (cmo5U34)-carboxymethyltransferase, carboxy-SAM-dependent compare
ECD_02148 +0.4 1.2 acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit compare
ECD_02089 +0.4 1.4 putative kinase compare
ECD_02324 +0.4 1.1 sulfate/thiosulfate ABC transporter permease compare
ECD_03098 +0.4 1.6 cadmium and peroxide resistance protein, stress-induced compare
ECD_02018 +0.4 1.3 galactitol-specific enzyme IIC component of PTS compare
ECD_00248 +0.4 2.3 ECP production pilus chaperone compare
ECD_01208 +0.4 0.9 formyltetrahydrofolate hydrolase compare


Specific Phenotypes

None in this experiment

For Escherichia coli BL21 in phage experiments

For phage MOI 10 across organisms