Experiment set6IT095 for Pseudomonas simiae WCS417

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2-Deoxy-D-ribonic acid lithium salt carbon source

200 most important genes:

  gene name fitness t score description  
PS417_01575 -8.1 -5.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_01855 -6.6 -4.3 phosphoribosyl-AMP cyclohydrolase compare
PS417_18585 -6.6 -4.5 3-isopropylmalate dehydrogenase compare
PS417_25725 -6.0 -14.5 anthranilate synthase component I compare
PS417_18600 -6.0 -5.4 isopropylmalate isomerase compare
PS417_18595 -5.7 -5.5 3-isopropylmalate dehydratase compare
PS417_18560 -5.5 -12.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_02510 -5.4 -4.6 ATP phosphoribosyltransferase regulatory subunit compare
PS417_01565 -5.3 -3.1 imidazole glycerol phosphate synthase compare
PS417_23800 -5.1 -11.0 ketol-acid reductoisomerase compare
PS417_04415 -4.9 -8.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_26740 -4.9 -9.1 homoserine acetyltransferase compare
PS417_23545 -4.8 -3.3 gamma-glutamyl kinase compare
PS417_25720 -4.8 -7.9 anthranilate synthase component II compare
PS417_23810 -4.7 -14.0 acetolactate synthase 3 catalytic subunit compare
PS417_07245 -4.6 -3.0 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
PS417_18530 -4.5 -5.8 O-succinylhomoserine sulfhydrylase compare
PS417_23805 -4.5 -6.1 acetolactate synthase 3 regulatory subunit compare
PS417_23995 -4.5 -1.9 preprotein translocase subunit SecG compare
PS417_00185 -4.4 -5.2 tryptophan synthase subunit beta compare
PS417_16465 -4.4 -12.7 sirohydrochlorin ferrochelatase compare
PS417_27040 -4.1 -5.5 3-phosphoglycerate dehydrogenase compare
PS417_25715 -4.1 -6.2 anthranilate phosphoribosyltransferase compare
PS417_27795 -4.1 -1.7 orotate phosphoribosyltransferase compare
PS417_01605 -4.0 -2.7 phosphoglycerate mutase compare
PS417_08125 -4.0 -1.7 prephenate dehydratase compare
PS417_06375 -4.0 -1.7 deoxycytidine triphosphate deaminase compare
PS417_01850 -4.0 -7.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_26745 -3.9 -4.9 methionine biosynthesis protein MetW compare
PS417_04420 -3.9 -11.8 histidinol dehydrogenase compare
PS417_05595 -3.9 -10.0 ornithine carbamoyltransferase compare
PS417_27835 -3.9 -7.3 endoribonuclease compare
PS417_02000 -3.7 -14.3 glutamate synthase compare
PS417_02005 -3.7 -9.7 glutamate synthase compare
PS417_07250 -3.5 -7.4 2-deoxy-3-keto-D-ribonoate cleavage enzyme (from data) compare
PS417_22620 -3.4 -6.4 pyruvate kinase compare
PS417_27195 -3.4 -1.9 N-acetylglutamate synthase compare
PS417_12290 -3.4 -6.1 sulfite reductase compare
PS417_01570 -3.3 -4.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_10515 -3.2 -8.2 acetyl-CoA acetyltransferase conserved
PS417_24745 -3.2 -2.9 gamma-glutamyl phosphate reductase compare
PS417_26890 -3.1 -6.5 dihydroxy-acid dehydratase compare
PS417_20125 -2.9 -5.7 phosphoribosylglycinamide formyltransferase compare
PS417_22960 -2.9 -8.4 hypothetical protein compare
PS417_12855 -2.9 -5.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_13970 -2.8 -11.3 glycerate kinase compare
PS417_26730 -2.8 -1.6 pyrroline-5-carboxylate reductase compare
PS417_23110 -2.7 -5.9 2-isopropylmalate synthase compare
PS417_00180 -2.7 -3.2 tryptophan synthase subunit alpha compare
PS417_13975 -2.7 -7.3 CdaR family transcriptional regulator compare
PS417_01560 -2.7 -3.9 imidazoleglycerol-phosphate dehydratase compare
PS417_23770 -2.6 -3.8 exodeoxyribonuclease V subunit alpha compare
PS417_26995 -2.6 -8.6 phosphoserine phosphatase compare
PS417_26695 -2.6 -1.7 uracil phosphoribosyltransferase compare
PS417_02415 -2.5 -6.7 phosphoserine phosphatase compare
PS417_10520 -2.3 -5.8 succinyl-CoA:3-ketoacid-CoA transferase compare
PS417_28220 -2.3 -2.4 LysR family transcriptional regulator compare
PS417_23210 -2.3 -2.9 serine acetyltransferase compare
PS417_24155 -2.2 -2.5 ATP-binding protein compare
PS417_20160 -2.2 -3.6 cysteine synthase compare
PS417_07170 -2.1 -4.7 hypothetical protein compare
PS417_01580 -2.1 -2.2 imidazole glycerol phosphate synthase compare
PS417_25710 -2.1 -2.0 indole-3-glycerol-phosphate synthase compare
PS417_20985 -2.0 -3.2 porin compare
PS417_05580 -1.9 -8.2 glycerol uptake facilitator GlpF compare
PS417_21125 -1.9 -6.8 phosphoadenosine phosphosulfate reductase compare
PS417_13305 -1.9 -2.0 hypothetical protein compare
PS417_21705 -1.8 -5.8 arginine N-succinyltransferase compare
PS417_05575 -1.8 -8.5 Glycerol kinase (EC 2.7.1.30) (from data) compare
PS417_07640 -1.7 -4.2 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_00510 -1.6 -1.6 membrane protein compare
PS417_23950 -1.6 -2.3 polynucleotide phosphorylase/polyadenylase compare
PS417_26990 -1.6 -1.5 RNA pyrophosphohydrolase compare
PS417_25825 -1.6 -2.9 sulfurtransferase compare
PS417_03465 -1.6 -2.5 type III secretion protein compare
PS417_06945 -1.5 -2.2 membrane protein compare
PS417_27800 -1.5 -4.7 exodeoxyribonuclease III compare
PS417_13510 -1.5 -1.5 polyketide cyclase compare
PS417_04380 -1.5 -1.1 ABC transporter permease compare
PS417_04375 -1.5 -3.3 ABC transporter ATP-binding protein compare
PS417_19850 -1.4 -5.6 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_23915 -1.4 -3.6 pantoate--beta-alanine ligase compare
PS417_23910 -1.4 -3.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_01920 -1.4 -2.1 ATP-dependent protease subunit HslV compare
PS417_15745 -1.3 -2.8 lipid carrier protein compare
PS417_27435 -1.3 -4.4 polyphosphate kinase compare
PS417_18590 -1.3 -2.4 SAM-dependent methyltransferase compare
PS417_21655 -1.3 -1.5 aspartate kinase compare
PS417_10530 -1.2 -3.2 LysR family transcriptional regulator compare
PS417_04385 -1.2 -3.9 organic solvent ABC transporter substrate-binding protein compare
PS417_07240 -1.2 -4.3 Transcriptional regulator of deoxyribose catabolism (from data) compare
PS417_16990 -1.2 -4.7 acyl-CoA dehydrogenase compare
PS417_03875 -1.2 -2.3 membrane protein compare
PS417_19790 -1.2 -2.1 ATP synthase compare
PS417_15480 -1.2 -2.6 ABC transporter substrate-binding protein compare
PS417_04390 -1.2 -3.6 toluene tolerance protein compare
PS417_27870 -1.1 -3.5 ATP-dependent DNA helicase RecG compare
PS417_06680 -1.1 -7.2 nuclease PIN compare
PS417_23135 -1.1 -1.8 GTP-binding protein compare
PS417_01915 -1.1 -1.2 ATP-dependent protease ATP-binding subunit HslU compare
PS417_16310 -1.1 -4.4 membrane protein compare
PS417_21035 -1.1 -6.8 multidrug transporter compare
PS417_18690 -1.1 -3.5 aromatic amino acid aminotransferase compare
PS417_10985 -1.1 -1.2 NADH:flavin oxidoreductase compare
PS417_10245 -1.1 -1.6 hypothetical protein compare
PS417_10425 -1.1 -1.9 hypothetical protein compare
PS417_15540 -1.1 -1.2 NUDIX hydrolase compare
PS417_26985 -1.0 -4.5 phosphoenolpyruvate-protein phosphotransferase compare
PS417_11060 -1.0 -2.8 transporter compare
PS417_20635 -1.0 -1.1 ABC transporter ATP-binding protein compare
PS417_27875 -1.0 -5.2 histidine kinase compare
PS417_25270 -1.0 -2.7 NrdR family transcriptional regulator compare
PS417_27610 -1.0 -3.4 hypothetical protein compare
PS417_23370 -1.0 -3.9 protoheme IX farnesyltransferase compare
PS417_19705 -1.0 -2.6 flagellar biosynthesis regulator FlhF compare
PS417_19860 -1.0 -7.2 flagellar hook protein FlgL compare
PS417_25780 -1.0 -2.7 molecular chaperone DnaJ compare
PS417_24905 -1.0 -4.1 DNA-binding protein compare
PS417_21595 -1.0 -2.9 flagellar biosynthesis protein FlgN compare
PS417_16395 -1.0 -2.8 arsenate reductase compare
PS417_07710 -0.9 -4.1 membrane protein compare
PS417_07505 -0.9 -5.3 cysteine synthase compare
PS417_21510 -0.9 -1.3 histidine kinase compare
PS417_16195 -0.9 -1.1 AraC family transcriptional regulator compare
PS417_27705 -0.9 -1.6 amino acid dehydrogenase compare
PS417_26120 -0.9 -1.7 hypothetical protein compare
PS417_09695 -0.9 -1.9 hydrolase compare
PS417_02425 -0.9 -3.9 thiosulfate sulfurtransferase compare
PS417_01380 -0.9 -2.8 nucleotide cyclase compare
PS417_02980 -0.9 -1.4 chemotaxis protein compare
PS417_23900 -0.9 -5.4 poly(A) polymerase compare
PS417_01270 -0.9 -1.2 iron ABC transporter substrate-binding protein compare
PS417_27035 -0.9 -4.1 FAD-linked oxidase compare
PS417_16560 -0.9 -1.9 GNAT family acetyltransferase compare
PS417_23375 -0.9 -1.6 cytochrome C oxidase compare
PS417_25315 -0.9 -3.8 membrane protein compare
PS417_19735 -0.9 -3.6 flagellar biosynthesis protein FliQ compare
PS417_16750 -0.9 -2.1 ABC transporter ATP-binding protein compare
PS417_19740 -0.9 -2.5 flagellar biosynthesis protein flip compare
PS417_14260 -0.9 -2.3 phosphate ABC transporter permease compare
PS417_08155 -0.9 -1.3 integration host factor subunit beta compare
PS417_17240 -0.9 -2.9 trigger factor compare
PS417_08135 -0.9 -4.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_19285 -0.9 -1.6 ankyrin compare
PS417_13455 -0.9 -1.9 alkaline proteinase inhibitor compare
PS417_27605 -0.8 -3.4 hypothetical protein compare
PS417_15885 -0.8 -1.5 GCN5 family acetyltransferase compare
PS417_15465 -0.8 -2.6 carboxynorspermidine decarboxylase compare
PS417_19865 -0.8 -5.1 flagellar hook protein FlgK compare
PS417_23775 -0.8 -1.4 exodeoxyribonuclease V subunit beta compare
PS417_27010 -0.8 -4.8 threonine dehydratase compare
PS417_26755 -0.8 -1.3 nucleoside-triphosphate diphosphatase compare
PS417_21630 -0.8 -2.0 magnesium transporter compare
PS417_24535 -0.8 -1.9 membrane protein compare
PS417_06200 -0.8 -3.3 protein-PII uridylyltransferase compare
PS417_06245 -0.8 -2.0 zinc metallopeptidase RseP compare
PS417_18370 -0.8 -2.3 hypothetical protein compare
PS417_06645 -0.8 -4.6 RNA polymerase-associated protein RapA compare
PS417_01030 -0.8 -1.2 glutamine ABC transporter substrate-binding protein compare
PS417_15035 -0.8 -1.4 alkylhydroperoxidase compare
PS417_23390 -0.8 -4.1 ubiquinol oxidase subunit II compare
PS417_18395 -0.8 -1.9 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_15160 -0.8 -1.2 hypothetical protein compare
PS417_17925 -0.8 -1.6 acyl-CoA dehydrogenase compare
PS417_21065 -0.8 -1.5 3-methylitaconate isomerase compare
PS417_22015 -0.8 -1.4 hypothetical protein compare
PS417_16490 -0.7 -1.5 cell division protein FtsK compare
PS417_12490 -0.7 -1.4 autotransporter adhesin compare
PS417_05455 -0.7 -3.3 XRE family transcriptional regulator compare
PS417_05815 -0.7 -2.2 recombinase RecA compare
PS417_04410 -0.7 -1.2 hypothetical protein compare
PS417_13175 -0.7 -1.4 iron transporter compare
PS417_17535 -0.7 -3.1 beta-lactamase compare
PS417_25895 -0.7 -1.5 glyoxalase compare
PS417_28450 -0.7 -2.2 XRE family transcriptional regulator compare
PS417_23385 -0.7 -3.4 cytochrome o ubiquinol oxidase subunit I compare
PS417_03385 -0.7 -0.9 flavin reductase compare
PS417_27045 -0.7 -1.2 ATPase compare
PS417_28145 -0.7 -1.8 AraC family transcriptional regulator compare
PS417_19840 -0.7 -4.6 flagellar cap protein FliD compare
PS417_07260 -0.7 -3.3 2-deoxy-D-ribonate transporter 2 (from data) compare
PS417_27305 -0.7 -3.0 5-formyltetrahydrofolate cyclo-ligase compare
PS417_22990 -0.7 -0.9 iron dicitrate transport regulator FecR compare
PS417_08745 -0.7 -1.9 hypothetical protein compare
PS417_24230 -0.7 -3.6 ATP-dependent protease compare
PS417_22450 -0.7 -0.7 ATP-dependent DNA helicase RuvA compare
PS417_19835 -0.7 -1.0 flagellar biosynthesis protein FliS compare
PS417_20785 -0.7 -2.7 transcriptional regulator compare
PS417_13255 -0.7 -1.0 ABC transporter compare
PS417_21180 -0.7 -2.3 short-chain dehydrogenase compare
PS417_28230 -0.6 -1.5 transcriptional regulator compare
PS417_08540 -0.6 -1.9 RNA helicase compare
PS417_12160 -0.6 -2.3 Fis family transcriptional regulator compare
PS417_08130 -0.6 -1.6 aspartate aminotransferase compare
PS417_19975 -0.6 -1.3 hypothetical protein compare
PS417_27585 -0.6 -1.1 diaminopimelate epimerase compare
PS417_16665 -0.6 -1.3 hypothetical protein compare
PS417_03995 -0.6 -2.1 Fe(II)-dependent oxygenase compare
PS417_13295 -0.6 -3.6 TetR family transcriptional regulator compare
PS417_13090 -0.6 -2.3 dienelactone hydrolase compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source 2-Deoxy-D-ribonic acid lithium salt in Pseudomonas simiae WCS417

For carbon source 2-Deoxy-D-ribonic acid lithium salt across organisms