Experiment set6IT094 for Pseudomonas simiae WCS417

Compare to:

2-Deoxy-D-Ribose carbon source

200 most important genes:

  gene name fitness t score description  
PS417_01575 -7.8 -5.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_18600 -7.1 -4.9 isopropylmalate isomerase compare
PS417_02510 -6.8 -6.6 ATP phosphoribosyltransferase regulatory subunit compare
PS417_18595 -6.4 -4.4 3-isopropylmalate dehydratase compare
PS417_25720 -6.4 -8.7 anthranilate synthase component II compare
PS417_07255 -6.3 -4.3 Deoxyribonolactonase (from data) conserved
PS417_23805 -6.1 -4.2 acetolactate synthase 3 regulatory subunit compare
PS417_04415 -6.1 -7.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_07250 -5.5 -5.4 2-deoxy-3-keto-D-ribonoate cleavage enzyme (from data) conserved
PS417_07245 -5.5 -3.8 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
PS417_23800 -5.5 -7.5 ketol-acid reductoisomerase compare
PS417_25725 -5.5 -13.3 anthranilate synthase component I compare
PS417_01565 -5.5 -4.5 imidazole glycerol phosphate synthase compare
PS417_18560 -5.4 -10.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_27040 -5.3 -3.4 3-phosphoglycerate dehydrogenase compare
PS417_18585 -5.2 -6.1 3-isopropylmalate dehydrogenase compare
PS417_07260 -5.1 -6.9 2-deoxy-D-ribonate transporter 2 (from data) compare
PS417_04420 -5.0 -10.1 histidinol dehydrogenase compare
PS417_26740 -4.8 -8.0 homoserine acetyltransferase compare
PS417_02005 -4.8 -10.7 glutamate synthase compare
PS417_18530 -4.8 -5.6 O-succinylhomoserine sulfhydrylase compare
PS417_10885 -4.7 -11.4 Deoxyribose 1-dehydrogenase, beta subunit (from data) compare
PS417_09725 -4.6 -7.7 transporter compare
PS417_00185 -4.6 -4.4 tryptophan synthase subunit beta compare
PS417_21490 -4.5 -8.8 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
PS417_16465 -4.4 -9.1 sirohydrochlorin ferrochelatase compare
PS417_10890 -4.3 -9.5 Deoxyribose 1-dehydrogenase, alpha subunit (from data) compare
PS417_23810 -4.3 -11.5 acetolactate synthase 3 catalytic subunit compare
PS417_23995 -4.3 -1.8 preprotein translocase subunit SecG compare
PS417_26745 -4.2 -6.3 methionine biosynthesis protein MetW compare
PS417_01855 -4.2 -4.4 phosphoribosyl-AMP cyclohydrolase compare
PS417_21495 -4.2 -4.0 lipoprotein compare
PS417_07265 -4.1 -11.2 2-deoxy-D-ribonate transporter 1 (from data) compare
PS417_12290 -4.1 -8.2 sulfite reductase compare
PS417_07240 -4.0 -3.3 Transcriptional regulator of deoxyribose catabolism (from data) compare
PS417_13970 -4.0 -9.2 glycerate kinase conserved
PS417_21395 -3.9 -9.6 radical SAM protein compare
PS417_25715 -3.9 -5.3 anthranilate phosphoribosyltransferase compare
PS417_23110 -3.7 -10.2 2-isopropylmalate synthase compare
PS417_02000 -3.7 -11.4 glutamate synthase compare
PS417_13305 -3.5 -2.1 hypothetical protein compare
PS417_13975 -3.4 -4.2 CdaR family transcriptional regulator compare
PS417_23770 -3.4 -2.3 exodeoxyribonuclease V subunit alpha compare
PS417_23545 -3.4 -3.0 gamma-glutamyl kinase compare
PS417_01850 -3.3 -6.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_20160 -3.3 -3.3 cysteine synthase compare
PS417_04875 -3.3 -1.9 molybdenum cofactor biosynthesis protein MoaE compare
PS417_24745 -3.3 -3.0 gamma-glutamyl phosphate reductase compare
PS417_04865 -3.2 -3.8 molybdenum cofactor biosynthesis protein MoaC compare
PS417_27195 -3.2 -1.8 N-acetylglutamate synthase compare
PS417_21035 -3.2 -11.3 multidrug transporter compare
PS417_26890 -3.1 -4.7 dihydroxy-acid dehydratase compare
PS417_07615 -2.9 -7.4 TetR family transcriptional regulator compare
PS417_25710 -2.9 -1.7 indole-3-glycerol-phosphate synthase compare
PS417_01580 -2.9 -1.4 imidazole glycerol phosphate synthase compare
PS417_22565 -2.8 -2.1 formyltetrahydrofolate deformylase compare
PS417_23775 -2.8 -3.7 exodeoxyribonuclease V subunit beta compare
PS417_08670 -2.7 -5.2 molybdopterin biosynthesis protein B compare
PS417_00180 -2.7 -2.6 tryptophan synthase subunit alpha compare
PS417_04595 -2.6 -3.7 cell division protein MraZ compare
PS417_27795 -2.5 -1.5 orotate phosphoribosyltransferase compare
PS417_14940 -2.4 -2.9 LysR family transcriptional regulator compare
PS417_08125 -2.4 -1.4 prephenate dehydratase compare
PS417_05595 -2.4 -8.9 ornithine carbamoyltransferase compare
PS417_06375 -2.4 -1.4 deoxycytidine triphosphate deaminase compare
PS417_08155 -2.3 -2.9 integration host factor subunit beta compare
PS417_16510 -2.3 -2.9 Clp protease ClpX compare
PS417_04180 -2.2 -3.3 GntR family transcriptional regulator compare
PS417_20635 -2.2 -1.6 ABC transporter ATP-binding protein compare
PS417_16990 -2.1 -7.4 acyl-CoA dehydrogenase compare
PS417_02415 -2.0 -3.0 phosphoserine phosphatase compare
PS417_26850 -2.0 -1.2 twin-arginine translocation pathway signal protein compare
PS417_03925 -2.0 -7.3 nicotinate-nucleotide pyrophosphorylase compare
PS417_27605 -1.9 -4.3 hypothetical protein compare
PS417_27875 -1.9 -8.8 histidine kinase compare
PS417_24155 -1.9 -2.2 ATP-binding protein compare
PS417_10515 -1.8 -4.3 acetyl-CoA acetyltransferase compare
PS417_22385 -1.8 -8.3 quinolinate synthase A compare
PS417_07455 -1.7 -2.1 glutamine amidotransferase compare
PS417_26730 -1.7 -1.3 pyrroline-5-carboxylate reductase compare
PS417_20985 -1.6 -2.3 porin compare
PS417_01605 -1.6 -1.9 phosphoglycerate mutase compare
PS417_12855 -1.6 -4.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_22670 -1.5 -5.8 AraC family transcriptional regulator compare
PS417_06685 -1.5 -1.4 beta-ketoadipyl CoA thiolase compare
PS417_06370 -1.5 -1.8 cold-shock protein compare
PS417_01710 -1.5 -5.7 histidine utilization repressor compare
PS417_01560 -1.5 -1.9 imidazoleglycerol-phosphate dehydratase compare
PS417_10880 -1.4 -4.1 cytochrome c component of deoxyribose dehydrogenase (from data) compare
PS417_28225 -1.4 -1.7 hypothetical protein compare
PS417_20125 -1.4 -2.8 phosphoribosylglycinamide formyltransferase compare
PS417_22450 -1.4 -1.2 ATP-dependent DNA helicase RuvA compare
PS417_06100 -1.3 -1.9 SAM-dependent methyltransferase compare
PS417_17705 -1.3 -1.7 LacI family transcriptional regulator compare
PS417_01030 -1.3 -1.7 glutamine ABC transporter substrate-binding protein compare
PS417_26120 -1.3 -2.8 hypothetical protein compare
PS417_09705 -1.3 -1.6 hypothetical protein compare
PS417_01915 -1.2 -1.1 ATP-dependent protease ATP-binding subunit HslU compare
PS417_03380 -1.2 -1.2 hypothetical protein compare
PS417_22445 -1.2 -2.2 ATP-dependent DNA helicase RuvB compare
PS417_23250 -1.2 -5.5 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_16395 -1.2 -3.2 arsenate reductase compare
PS417_27945 -1.2 -1.5 type VI secretion protein ImpA compare
PS417_15540 -1.2 -1.8 NUDIX hydrolase compare
PS417_08545 -1.2 -1.4 aromatic ring-opening dioxygenase LigB compare
PS417_10810 -1.2 -1.8 hypothetical protein compare
PS417_15480 -1.2 -1.8 ABC transporter substrate-binding protein compare
PS417_07115 -1.2 -7.8 L-aspartate oxidase compare
PS417_13295 -1.2 -5.2 TetR family transcriptional regulator compare
PS417_10995 -1.2 -2.6 GntR family transcriptional regulator compare
PS417_23045 -1.2 -2.7 Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) compare
PS417_10390 -1.2 -2.0 RNA polymerase subunit sigma24 compare
PS417_08435 -1.1 -1.6 pilus assembly protein PilZ compare
PS417_22945 -1.1 -2.0 phosphoribosylglycinamide formyltransferase compare
PS417_04375 -1.1 -2.5 ABC transporter ATP-binding protein compare
PS417_20715 -1.1 -3.1 cytochrome Cbb3 compare
PS417_09700 -1.1 -2.1 transaldolase compare
PS417_21705 -1.1 -2.6 arginine N-succinyltransferase compare
PS417_08135 -1.1 -4.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_08350 -1.1 -2.7 preprotein translocase subunit TatD compare
PS417_09695 -1.1 -1.3 hydrolase compare
PS417_12870 -1.1 -1.5 enoyl-CoA hydratase compare
PS417_11845 -1.1 -2.7 RpiR family transcriptional regulator compare
PS417_15875 -1.1 -1.6 LuxR family transcriptional regulator compare
PS417_08730 -1.0 -1.2 cytochrome C compare
PS417_00445 -1.0 -6.2 histidine kinase compare
PS417_27300 -1.0 -1.0 cell division protein ZapA compare
PS417_12005 -1.0 -2.6 hypothetical protein compare
PS417_23170 -1.0 -1.7 FeS assembly protein IscX compare
PS417_25790 -1.0 -4.3 aminoglycoside phosphotransferase compare
PS417_14540 -1.0 -1.4 cytochrome C oxidase subunit III compare
PS417_05160 -1.0 -1.1 DNA polymerase III subunit chi compare
PS417_01095 -1.0 -1.2 amino acid ABC transporter ATP-binding protein compare
PS417_06365 -1.0 -4.6 RNA polymerase sigma factor compare
PS417_08540 -1.0 -2.4 RNA helicase compare
PS417_16005 -1.0 -2.6 ATPase compare
PS417_02485 -1.0 -4.1 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_07640 -1.0 -2.0 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_05815 -1.0 -2.9 recombinase RecA compare
PS417_23950 -0.9 -1.1 polynucleotide phosphorylase/polyadenylase compare
PS417_27445 -0.9 -6.7 membrane protein compare
PS417_05580 -0.9 -4.5 glycerol uptake facilitator GlpF compare
PS417_08675 -0.9 -3.3 molybdenum cofactor biosynthesis protein MoaA compare
PS417_17925 -0.9 -1.7 acyl-CoA dehydrogenase compare
PS417_17240 -0.9 -2.7 trigger factor compare
PS417_06680 -0.9 -6.0 nuclease PIN compare
PS417_21655 -0.9 -1.1 aspartate kinase compare
PS417_06465 -0.9 -3.2 transcriptional regulator compare
PS417_27865 -0.9 -1.9 LysR family transcriptional regulator compare
PS417_17000 -0.9 -1.9 MerR family transcriptional regulator compare
PS417_19285 -0.9 -0.9 ankyrin compare
PS417_01950 -0.9 -3.9 malate dehydrogenase compare
PS417_14915 -0.9 -2.2 host specificity protein compare
PS417_17155 -0.9 -2.8 cytochrome B561 compare
PS417_11825 -0.9 -2.0 transcriptional regulator compare
PS417_24775 -0.9 -2.5 dehydratase compare
PS417_07620 -0.9 -1.9 beta-hexosaminidase compare
PS417_10265 -0.9 -2.1 peptidase compare
PS417_09710 -0.9 -1.9 dehydrogenase compare
PS417_27870 -0.9 -2.3 ATP-dependent DNA helicase RecG compare
PS417_04775 -0.8 -2.1 short-chain dehydrogenase compare
PS417_11310 -0.8 -3.2 alkaline phosphatase compare
PS417_04410 -0.8 -1.7 hypothetical protein compare
PS417_10520 -0.8 -2.7 succinyl-CoA:3-ketoacid-CoA transferase compare
PS417_26995 -0.8 -4.3 phosphoserine phosphatase compare
PS417_23150 -0.8 -1.6 Cro/Cl family transcriptional regulator compare
PS417_10675 -0.8 -0.8 TetR family transcriptional regulator compare
PS417_26985 -0.8 -3.5 phosphoenolpyruvate-protein phosphotransferase compare
PS417_17215 -0.8 -1.4 peptidylprolyl isomerase compare
PS417_07765 -0.8 -3.6 hypothetical protein compare
PS417_23715 -0.8 -2.0 cupin compare
PS417_08130 -0.8 -1.7 aspartate aminotransferase compare
PS417_16185 -0.8 -3.0 hypothetical protein compare
PS417_21430 -0.8 -1.4 3-oxoacyl-ACP synthase compare
PS417_12390 -0.8 -1.7 hypothetical protein compare
PS417_08220 -0.8 -0.7 epimerase compare
PS417_22115 -0.8 -1.8 transcriptional regulator compare
PS417_01290 -0.8 -0.8 ADP-ribose diphosphatase compare
PS417_27435 -0.8 -3.1 polyphosphate kinase compare
PS417_11530 -0.8 -3.7 amidase compare
PS417_05575 -0.8 -3.9 Glycerol kinase (EC 2.7.1.30) (from data) compare
PS417_07565 -0.8 -1.2 hypothetical protein compare
PS417_04650 -0.8 -1.1 D-alanine--D-alanine ligase compare
PS417_08360 -0.8 -1.5 DoxX family protein compare
PS417_21030 -0.8 -4.0 GntR family transcriptional regulator compare
PS417_00030 -0.8 -1.8 hypothetical protein compare
PS417_27305 -0.8 -3.7 5-formyltetrahydrofolate cyclo-ligase compare
PS417_25650 -0.7 -1.5 anhydro-N-acetylmuramic acid kinase compare
PS417_01570 -0.7 -1.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_24085 -0.7 -2.0 protein RnfH compare
PS417_04225 -0.7 -1.6 conjugal transfer protein TraR compare
PS417_13575 -0.7 -2.2 succinylglutamate desuccinylase compare
PS417_01280 -0.7 -1.3 peptidoglycan-binding protein LysM compare
PS417_19665 -0.7 -1.7 flagellar motor protein MotD compare
PS417_21000 -0.7 -0.9 CrfX protein compare
PS417_13525 -0.7 -2.8 membrane protein compare
PS417_27215 -0.7 -1.6 hypothetical protein compare
PS417_06095 -0.7 -0.9 energy transducer TonB compare
PS417_28200 -0.7 -2.1 hypothetical protein compare
PS417_27035 -0.7 -2.4 FAD-linked oxidase compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source 2-Deoxy-D-Ribose in Pseudomonas simiae WCS417

For carbon source 2-Deoxy-D-Ribose across organisms