Experiment set6IT093 for Pseudomonas simiae WCS417

Compare to:

2-Deoxy-D-Ribose carbon source

200 most important genes:

  gene name fitness t score description  
PS417_01855 -6.4 -4.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_04415 -6.2 -7.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_01575 -6.1 -3.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_26740 -5.9 -8.1 homoserine acetyltransferase compare
PS417_07250 -5.7 -5.5 2-deoxy-3-keto-D-ribonoate cleavage enzyme (from data) conserved
PS417_18585 -5.6 -5.5 3-isopropylmalate dehydrogenase compare
PS417_07245 -5.6 -3.8 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
PS417_13975 -5.5 -6.0 CdaR family transcriptional regulator compare
PS417_07260 -5.4 -8.3 2-deoxy-D-ribonate transporter 2 (from data) compare
PS417_07240 -5.4 -5.2 Transcriptional regulator of deoxyribose catabolism (from data) compare
PS417_23800 -5.4 -9.0 ketol-acid reductoisomerase compare
PS417_27040 -5.3 -3.3 3-phosphoglycerate dehydrogenase compare
PS417_16465 -5.3 -9.5 sirohydrochlorin ferrochelatase compare
PS417_25725 -5.3 -16.9 anthranilate synthase component I compare
PS417_18560 -5.3 -10.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_04420 -5.1 -9.8 histidinol dehydrogenase compare
PS417_02005 -5.1 -10.8 glutamate synthase compare
PS417_02510 -5.0 -5.0 ATP phosphoribosyltransferase regulatory subunit compare
PS417_23810 -5.0 -11.5 acetolactate synthase 3 catalytic subunit compare
PS417_10890 -4.8 -8.6 Deoxyribose 1-dehydrogenase, alpha subunit (from data) compare
PS417_09725 -4.6 -8.8 transporter compare
PS417_23545 -4.6 -3.2 gamma-glutamyl kinase compare
PS417_07265 -4.5 -11.3 2-deoxy-D-ribonate transporter 1 (from data) compare
PS417_23805 -4.4 -5.2 acetolactate synthase 3 regulatory subunit compare
PS417_06685 -4.4 -1.8 beta-ketoadipyl CoA thiolase compare
PS417_18595 -4.3 -3.5 3-isopropylmalate dehydratase compare
PS417_18530 -4.3 -4.5 O-succinylhomoserine sulfhydrylase compare
PS417_23995 -4.3 -1.8 preprotein translocase subunit SecG compare
PS417_25715 -4.3 -5.1 anthranilate phosphoribosyltransferase compare
PS417_13970 -4.2 -10.3 glycerate kinase conserved
PS417_24745 -4.1 -2.8 gamma-glutamyl phosphate reductase compare
PS417_00185 -4.1 -4.8 tryptophan synthase subunit beta compare
PS417_01565 -4.0 -3.2 imidazole glycerol phosphate synthase compare
PS417_27795 -3.9 -1.6 orotate phosphoribosyltransferase compare
PS417_10885 -3.9 -10.6 Deoxyribose 1-dehydrogenase, beta subunit (from data) compare
PS417_26745 -3.8 -4.9 methionine biosynthesis protein MetW compare
PS417_01605 -3.8 -2.6 phosphoglycerate mutase compare
PS417_12290 -3.8 -6.8 sulfite reductase compare
PS417_02000 -3.6 -12.6 glutamate synthase compare
PS417_26890 -3.5 -7.1 dihydroxy-acid dehydratase compare
PS417_07255 -3.5 -5.8 Deoxyribonolactonase (from data) conserved
PS417_21035 -3.5 -14.1 multidrug transporter compare
PS417_04865 -3.5 -3.6 molybdenum cofactor biosynthesis protein MoaC compare
PS417_21490 -3.4 -8.1 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
PS417_21395 -3.3 -12.9 radical SAM protein compare
PS417_18600 -3.3 -2.6 isopropylmalate isomerase compare
PS417_27195 -3.2 -1.8 N-acetylglutamate synthase compare
PS417_14940 -3.2 -2.9 LysR family transcriptional regulator compare
PS417_25720 -3.2 -4.3 anthranilate synthase component II compare
PS417_09705 -3.0 -4.9 hypothetical protein compare
PS417_20985 -3.0 -3.5 porin compare
PS417_01850 -3.0 -5.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_08670 -3.0 -5.2 molybdopterin biosynthesis protein B compare
PS417_25710 -3.0 -1.7 indole-3-glycerol-phosphate synthase compare
PS417_01580 -3.0 -1.4 imidazole glycerol phosphate synthase compare
PS417_23110 -2.9 -6.8 2-isopropylmalate synthase compare
PS417_01560 -2.8 -3.7 imidazoleglycerol-phosphate dehydratase compare
PS417_22445 -2.8 -4.9 ATP-dependent DNA helicase RuvB compare
PS417_00180 -2.8 -2.6 tryptophan synthase subunit alpha compare
PS417_04595 -2.7 -3.8 cell division protein MraZ compare
PS417_20160 -2.6 -2.9 cysteine synthase compare
PS417_26730 -2.6 -1.5 pyrroline-5-carboxylate reductase compare
PS417_07615 -2.6 -7.5 TetR family transcriptional regulator compare
PS417_22570 -2.5 -1.4 H-NS histone compare
PS417_16510 -2.5 -4.8 Clp protease ClpX compare
PS417_03925 -2.5 -7.5 nicotinate-nucleotide pyrophosphorylase compare
PS417_22450 -2.4 -1.8 ATP-dependent DNA helicase RuvA compare
PS417_04875 -2.4 -1.5 molybdenum cofactor biosynthesis protein MoaE compare
PS417_23770 -2.3 -3.3 exodeoxyribonuclease V subunit alpha compare
PS417_24370 -2.3 -1.3 (2Fe-2S)-binding protein compare
PS417_02415 -2.2 -5.3 phosphoserine phosphatase compare
PS417_27605 -2.2 -3.3 hypothetical protein compare
PS417_08730 -2.1 -2.7 cytochrome C compare
PS417_05595 -2.1 -7.8 ornithine carbamoyltransferase compare
PS417_04380 -2.1 -1.7 ABC transporter permease compare
PS417_04180 -2.0 -3.8 GntR family transcriptional regulator compare
PS417_21495 -2.0 -2.6 lipoprotein compare
PS417_10515 -1.9 -5.8 acetyl-CoA acetyltransferase compare
PS417_27875 -1.9 -7.6 histidine kinase compare
PS417_23775 -1.9 -3.0 exodeoxyribonuclease V subunit beta compare
PS417_02560 -1.8 -2.4 23S rRNA methyltransferase compare
PS417_26175 -1.8 -1.4 sarcosine oxidase subunit gamma compare
PS417_22385 -1.7 -9.6 quinolinate synthase A compare
PS417_26985 -1.7 -4.8 phosphoenolpyruvate-protein phosphotransferase compare
PS417_00370 -1.7 -1.5 hypothetical protein compare
PS417_05010 -1.6 -2.4 IclR family transcriptional regulator compare
PS417_24155 -1.6 -2.3 ATP-binding protein compare
PS417_28230 -1.5 -2.8 transcriptional regulator compare
PS417_13295 -1.5 -5.7 TetR family transcriptional regulator compare
PS417_04410 -1.5 -2.1 hypothetical protein compare
PS417_07115 -1.4 -7.3 L-aspartate oxidase compare
PS417_21705 -1.4 -4.5 arginine N-succinyltransferase compare
PS417_01950 -1.4 -4.4 malate dehydrogenase compare
PS417_16990 -1.4 -4.4 acyl-CoA dehydrogenase compare
PS417_17705 -1.4 -2.7 LacI family transcriptional regulator compare
PS417_20125 -1.4 -3.8 phosphoribosylglycinamide formyltransferase compare
PS417_21015 -1.4 -1.6 EstX protein compare
PS417_10880 -1.4 -4.0 cytochrome c component of deoxyribose dehydrogenase (from data) compare
PS417_01915 -1.4 -1.2 ATP-dependent protease ATP-binding subunit HslU compare
PS417_08130 -1.3 -2.1 aspartate aminotransferase compare
PS417_22060 -1.3 -1.6 hypothetical protein compare
PS417_04375 -1.3 -2.4 ABC transporter ATP-binding protein compare
PS417_19600 -1.3 -1.4 exonuclease compare
PS417_13755 -1.3 -2.4 oxidoreductase compare
PS417_08025 -1.3 -1.8 acetylornithine aminotransferase compare
PS417_07940 -1.3 -2.4 hypothetical protein compare
PS417_09695 -1.3 -2.1 hydrolase compare
PS417_09700 -1.3 -2.5 transaldolase compare
PS417_17035 -1.2 -1.5 Cro/Cl family transcriptional regulator compare
PS417_21030 -1.2 -4.7 GntR family transcriptional regulator compare
PS417_12490 -1.2 -2.0 autotransporter adhesin compare
PS417_23250 -1.2 -5.4 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_27445 -1.2 -5.1 membrane protein compare
PS417_08135 -1.2 -4.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_17215 -1.2 -2.9 peptidylprolyl isomerase compare
PS417_08430 -1.2 -3.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
PS417_12855 -1.2 -3.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_11845 -1.2 -4.0 RpiR family transcriptional regulator compare
PS417_22670 -1.2 -6.4 AraC family transcriptional regulator compare
PS417_27315 -1.2 -1.1 hypothetical protein compare
PS417_23950 -1.1 -1.5 polynucleotide phosphorylase/polyadenylase compare
PS417_07140 -1.1 -2.5 peptidase M48 compare
PS417_07455 -1.1 -2.1 glutamine amidotransferase compare
PS417_27300 -1.1 -1.1 cell division protein ZapA compare
PS417_27435 -1.1 -4.4 polyphosphate kinase compare
PS417_08675 -1.1 -4.4 molybdenum cofactor biosynthesis protein MoaA compare
PS417_00445 -1.1 -5.8 histidine kinase compare
PS417_05785 -1.1 -3.0 tail protein compare
PS417_10995 -1.1 -2.6 GntR family transcriptional regulator compare
PS417_27610 -1.1 -3.9 hypothetical protein compare
PS417_18760 -1.1 -2.6 hypothetical protein compare
PS417_01735 -1.1 -3.3 ABC transporter permease compare
PS417_12120 -1.1 -4.3 IclR family transcriptional regulator compare
PS417_27135 -1.1 -0.8 glutamine synthetase compare
PS417_01710 -1.1 -3.2 histidine utilization repressor compare
PS417_09720 -1.0 -1.8 methyltransferase compare
PS417_27045 -1.0 -2.6 ATPase compare
PS417_06365 -1.0 -4.5 RNA polymerase sigma factor compare
PS417_08125 -1.0 -0.8 prephenate dehydratase compare
PS417_04590 -1.0 -4.0 methyltransferase compare
PS417_24085 -1.0 -2.1 protein RnfH compare
PS417_06375 -1.0 -0.8 deoxycytidine triphosphate deaminase compare
PS417_16515 -1.0 -1.9 Clp protease ClpS compare
PS417_01115 -1.0 -1.4 serine acetyltransferase compare
PS417_17930 -0.9 -2.5 aldehyde dehydrogenase compare
PS417_28315 -0.9 -1.8 zinc ABC transporter permease compare
PS417_13165 -0.9 -2.4 peroxidase compare
PS417_26850 -0.9 -0.7 twin-arginine translocation pathway signal protein compare
PS417_17000 -0.9 -2.9 MerR family transcriptional regulator compare
PS417_16555 -0.9 -2.0 cupin compare
PS417_08205 -0.9 -2.6 acetyltransferase compare
PS417_01715 -0.9 -1.0 hypothetical protein compare
PS417_06500 -0.9 -1.4 hypothetical protein compare
PS417_21210 -0.9 -1.7 amidotransferase compare
PS417_25825 -0.9 -2.4 sulfurtransferase compare
PS417_08580 -0.9 -4.1 histidine kinase compare
PS417_15285 -0.9 -1.1 type VI secretion protein compare
PS417_27290 -0.9 -1.1 hypothetical protein compare
PS417_08540 -0.9 -2.2 RNA helicase compare
PS417_00900 -0.9 -1.9 4-aminobutyrate aminotransferase compare
PS417_08155 -0.9 -1.0 integration host factor subunit beta compare
PS417_18395 -0.9 -1.7 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_27690 -0.9 -2.7 XRE family transcriptional regulator compare
PS417_08220 -0.9 -0.7 epimerase compare
PS417_08200 -0.9 -1.9 hypothetical protein compare
PS417_26040 -0.9 -2.9 malate synthase compare
PS417_00085 -0.9 -1.9 16S rRNA methyltransferase compare
PS417_09710 -0.9 -1.7 dehydrogenase compare
PS417_21730 -0.8 -2.7 peptidase M14 compare
PS417_17755 -0.8 -1.4 hypothetical protein compare
PS417_12205 -0.8 -4.7 hypothetical protein compare
PS417_10015 -0.8 -1.0 hypothetical protein compare
PS417_08390 -0.8 -5.5 transcription elongation factor GreB compare
PS417_18420 -0.8 -2.1 deoxyribonuclease compare
PS417_25650 -0.8 -3.1 anhydro-N-acetylmuramic acid kinase compare
PS417_05575 -0.8 -4.4 Glycerol kinase (EC 2.7.1.30) (from data) compare
PS417_07170 -0.8 -3.2 hypothetical protein compare
PS417_08335 -0.8 -1.4 hypothetical protein compare
PS417_20715 -0.8 -1.5 cytochrome Cbb3 compare
PS417_21070 -0.8 -1.0 aconitate hydratase compare
PS417_22115 -0.8 -2.1 transcriptional regulator compare
PS417_04390 -0.8 -4.0 toluene tolerance protein compare
PS417_23580 -0.8 -0.9 peptidylprolyl isomerase compare
PS417_12310 -0.8 -4.0 methionine synthase compare
PS417_06540 -0.8 -0.6 membrane protein compare
PS417_12195 -0.8 -2.8 ABC transporter permease compare
PS417_05580 -0.8 -3.4 glycerol uptake facilitator GlpF compare
PS417_15390 -0.7 -2.0 hypothetical protein compare
PS417_10460 -0.7 -5.2 selenide, water dikinase compare
PS417_06100 -0.7 -1.2 SAM-dependent methyltransferase compare
PS417_06200 -0.7 -2.3 protein-PII uridylyltransferase compare
PS417_20915 -0.7 -1.7 hypothetical protein compare
PS417_24705 -0.7 -1.7 D-alanyl-D-alanine carboxypeptidase compare
PS417_03785 -0.7 -1.1 pilus assembly protein PilV compare
PS417_11400 -0.7 -1.1 phosphoglycerate mutase compare
PS417_27910 -0.7 -1.0 PppA compare
PS417_24535 -0.7 -1.8 membrane protein compare
PS417_12925 -0.7 -2.9 serine dehydratase compare
PS417_18190 -0.7 -3.4 IclR family transcriptional regulator compare
PS417_27870 -0.7 -2.3 ATP-dependent DNA helicase RecG compare


Specific Phenotypes

For 15 genes in this experiment

For carbon source 2-Deoxy-D-Ribose in Pseudomonas simiae WCS417

For carbon source 2-Deoxy-D-Ribose across organisms