Experiment set6IT076 for Pseudomonas syringae pv. syringae B728a ΔmexB

apoplastic; Green bean; 6 days

Group: in planta
Media:
Culturing: SyringaeB728a_mexBdelta_ML3
By: Tyler Helmann on 9/12/18

Specific Phenotypes

For 7 genes in this experiment

SEED Subsystems

Subsystem	#Specific
Alginate metabolism	1
Entner-Doudoroff Pathway	1
Fructose utilization	1
One-carbon metabolism by tetrahydropterines	1
Pyruvate metabolism I: anaplerotic reactions, PEP	1
Serine-glyoxylate cycle	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Pentose phosphate pathway
• Lipopolysaccharide biosynthesis
• Glycolysis / Gluconeogenesis
• Citrate cycle (TCA cycle)
• Fructose and mannose metabolism
• Fatty acid biosynthesis
• Alanine and aspartate metabolism
• Lysine degradation
• Histidine metabolism
• Tyrosine metabolism
• Phenylalanine metabolism
• Cyanoamino acid metabolism
• Glycerophospholipid metabolism
• Ether lipid metabolism
• Glycosphingolipid biosynthesis - ganglio series
• Pyruvate metabolism
• 1- and 2-Methylnaphthalene degradation
• Glyoxylate and dicarboxylate metabolism
• Benzoate degradation via CoA ligation
• Ethylbenzene degradation
• Butanoate metabolism
• One carbon pool by folate
• Carbon fixation in photosynthetic organisms
• Nicotinate and nicotinamide metabolism
• Limonene and pinene degradation
• Diterpenoid biosynthesis
• Carotenoid biosynthesis - General
• Nitrogen metabolism
• Anthocyanin biosynthesis
• Alkaloid biosynthesis I
• Alkaloid biosynthesis II
• Biosynthesis of unsaturated fatty acids
• Biosynthesis of type II polyketide backbone
• Biosynthesis of terpenoids and steroids

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
L-asparagine degradation I	1	1	1
fructose degradation	1	1	1
Entner-Doudoroff shunt	2	2	1
L-asparagine degradation III (mammalian)	3	2	1
formaldehyde oxidation VII (THF pathway)	4	4	1
superpathway of L-aspartate and L-asparagine biosynthesis	4	3	1
D-galactosamine and N-acetyl-D-galactosamine degradation	4	1	1
N-(1-deoxy-D-fructos-1-yl)-L-asparagine degradation	5	2	1
galactitol degradation	5	2	1
N-acetyl-D-galactosamine degradation	5	1	1
lactose degradation I	5	1	1
alginate biosynthesis II (bacterial)	7	6	1
Entner-Doudoroff pathway I	9	8	1
gluconeogenesis I	13	13	1
folate transformations I	13	9	1
superpathway of glyoxylate cycle and fatty acid degradation	14	12	1
C4 photosynthetic carbon assimilation cycle, PEPCK type	14	9	1
purine nucleobases degradation I (anaerobic)	15	6	1
superpathway of glycolysis and the Entner-Doudoroff pathway	17	14	1
superpathway of hexitol degradation (bacteria)	18	12	1
purine nucleobases degradation II (anaerobic)	24	16	1