Experiment set6IT075 for Pseudomonas syringae pv. syringae B728a ΔmexB
apoplastic; Green bean; 6 days
Group: in plantaMedia:
Culturing: SyringaeB728a_mexBdelta_ML3
By: Tyler Helmann on 9/12/18
Specific Phenotypes
For 5 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Alginate metabolism | 1 |
| One-carbon metabolism by tetrahydropterines | 1 |
| Pyruvate metabolism I: anaplerotic reactions, PEP | 1 |
| Serine-glyoxylate cycle | 1 |
| Type IV pilus | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Histidine metabolism
- Tyrosine metabolism
- Carotenoid biosynthesis - General
- Anthocyanin biosynthesis
- Alkaloid biosynthesis I
- Glycolysis / Gluconeogenesis
- Citrate cycle (TCA cycle)
- Fatty acid biosynthesis
- Ubiquinone and menaquinone biosynthesis
- Alanine and aspartate metabolism
- Lysine degradation
- Phenylalanine metabolism
- Tryptophan metabolism
- Benzoxazinone biosynthesis
- Cyanoamino acid metabolism
- Lipopolysaccharide biosynthesis
- Glycerophospholipid metabolism
- Ether lipid metabolism
- Glycosphingolipid biosynthesis - ganglio series
- Pyruvate metabolism
- 1- and 2-Methylnaphthalene degradation
- Naphthalene and anthracene degradation
- Glyoxylate and dicarboxylate metabolism
- Benzoate degradation via CoA ligation
- Ethylbenzene degradation
- Butanoate metabolism
- One carbon pool by folate
- Carbon fixation in photosynthetic organisms
- Porphyrin and chlorophyll metabolism
- Limonene and pinene degradation
- Diterpenoid biosynthesis
- Nitrogen metabolism
- Phenylpropanoid biosynthesis
- Flavonoid biosynthesis
- Alkaloid biosynthesis II
- Insect hormone biosynthesis
- Biosynthesis of unsaturated fatty acids
- Biosynthesis of type II polyketide backbone
- Biosynthesis of terpenoids and steroids
- Biosynthesis of alkaloids derived from shikimate pathway
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-asparagine degradation I | 1 | 1 | 1 |
| L-asparagine degradation III (mammalian) | 3 | 2 | 1 |
| formaldehyde oxidation VII (THF pathway) | 4 | 4 | 1 |
| superpathway of L-aspartate and L-asparagine biosynthesis | 4 | 3 | 1 |
| N-(1-deoxy-D-fructos-1-yl)-L-asparagine degradation | 5 | 2 | 1 |
| alginate biosynthesis II (bacterial) | 7 | 6 | 1 |
| gluconeogenesis I | 13 | 13 | 1 |
| folate transformations I | 13 | 9 | 1 |
| superpathway of glyoxylate cycle and fatty acid degradation | 14 | 12 | 1 |
| C4 photosynthetic carbon assimilation cycle, PEPCK type | 14 | 9 | 1 |
| purine nucleobases degradation I (anaerobic) | 15 | 6 | 1 |
| purine nucleobases degradation II (anaerobic) | 24 | 16 | 1 |