| | gene | name | fitness | t score | description | |
|---|
| b3979 | thrT | -5.5 | -1.0 | tRNA-Thr (NCBI) | compare |
| b0222 | lpcA | -4.8 | -5.3 | phosphoheptose isomerase (NCBI) | compare |
| b2330 | yfcB | -4.7 | -2.2 | putative adenine-specific methylase (VIMSS) | compare |
| b0232 | yafN | -4.5 | -1.2 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b3390 | aroK | -4.5 | -3.1 | shikimate kinase I (NCBI) | compare |
| b3386 | rpe | -3.9 | -4.1 | ribulose-phosphate 3-epimerase (NCBI) | compare |
| b3811 | xerC | -3.8 | -5.8 | site-specific tyrosine recombinase XerC (NCBI) | compare |
| b2830 | nudH | -3.7 | -2.4 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b2620 | smpB | -3.6 | -2.1 | SsrA-binding protein (NCBI) | compare |
| b0630 | lipB | -3.5 | -2.9 | protein of lipoate biosynthesis (VIMSS) | compare |
| b3500 | gor | -3.5 | -2.6 | glutathione reductase (NCBI) | compare |
| b1161 | ycgX | -3.4 | -1.8 | hypothetical protein (NCBI) | compare |
| b2699 | recA | -3.3 | -3.5 | recombinase A (NCBI) | compare |
| b3725 | pstB | -3.3 | -5.5 | phosphate transporter subunit (NCBI) | compare |
| b1545 | pinQ | -3.2 | -1.2 | Qin prophage; predicted site-specific recombinase (NCBI) | compare |
| b3483 | yhhH | -3.1 | -1.3 | orf, hypothetical protein (VIMSS) | compare |
| b0118 | acnB | -3.1 | -5.2 | aconitate hydratase (NCBI) | compare |
| b3121 | yhaC | -3.1 | -2.3 | hypothetical protein (NCBI) | compare |
| b3463 | ftsE | -3.0 | -6.9 | predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b4279 | yjhB | -3.0 | -3.3 | putative transport protein (VIMSS) | compare |
| b0200 | gmhB | -3.0 | -3.1 | hypothetical protein (NCBI) | compare |
| b1850 | eda | -2.9 | -2.4 | keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (NCBI) | compare |
| b0738 | tolR | -2.8 | -5.2 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b0603 | ybdO | -2.8 | -3.3 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3621 | rfaC | -2.7 | -7.7 | ADP-heptose:LPS heptosyl transferase I (NCBI) | compare |
| b1001 | yccE | -2.7 | -3.1 | hypothetical protein (NCBI) | compare |
| b2567 | rnc | -2.6 | -2.0 | ribonuclease III (NCBI) | compare |
| b4172 | hfq | -2.6 | -2.2 | RNA-binding protein Hfq (NCBI) | compare |
| b4375 | prfC | -2.6 | -8.5 | peptide chain release factor 3 (NCBI) | compare |
| b4402 | yjjY | -2.5 | -1.3 | hypothetical protein (NCBI) | compare |
| b4253 | yjgL | -2.5 | -7.1 | orf, hypothetical protein (VIMSS) | compare |
| b3741 | gidA | -2.5 | -10.2 | glucose-inhibited division protein A (NCBI) | compare |
| b1882 | cheY | -2.5 | -1.1 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b1497 | b1497 | -2.5 | -3.6 | putative enzyme (VIMSS) | compare |
| b0890 | ftsK | -2.4 | -9.5 | DNA-binding membrane protein required for chromosome resolution and partitioning (NCBI) | compare |
| b1363 | trkG | -2.4 | -4.1 | Rac prophage; potassium transporter subunit (NCBI) | compare |
| b1505 | ydeT | -2.3 | -5.4 | hypothetical protein (RefSeq) | compare |
| b2576 | srmB | -2.3 | -5.0 | ATP-dependent RNA helicase (NCBI) | compare |
| b3609 | secB | -2.3 | -3.1 | export protein SecB (NCBI) | compare |
| b0888 | trxB | -2.2 | -4.1 | thioredoxin reductase, FAD/NAD(P)-binding (NCBI) | compare |
| b3290 | trkA | -2.2 | -4.9 | potassium transporter peripheral membrane component (NCBI) | compare |
| b3162 | deaD | -2.2 | -6.4 | inducible ATP-independent RNA helicase (VIMSS) | compare |
| b3620 | rfaF | -2.2 | -5.3 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b2822 | recC | -2.2 | -6.1 | exonuclease V (RecBCD complex), gamma chain (NCBI) | compare |
| b1165 | ymgA | -2.1 | -3.7 | hypothetical protein (NCBI) | compare |
| b1070 | flgN | -2.1 | -0.9 | export chaperone for FlgK and FlgL (NCBI) | compare |
| b3619 | rfaD | -2.1 | -4.5 | ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding (NCBI) | compare |
| b1286 | rnb | -2.1 | -3.9 | exoribonuclease II (NCBI) | compare |
| b1677 | lpp | -2.1 | -2.8 | murein lipoprotein (NCBI) | compare |
| b3792 | wzxE | -2.1 | -7.4 | O-antigen translocase (NCBI) | compare |
| b3164 | pnp | -2.1 | -1.7 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b1257 | yciE | -2.0 | -2.3 | hypothetical protein (NCBI) | compare |
| b3462 | ftsX | -2.0 | -6.0 | predicted transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b1236 | galU | -2.0 | -5.1 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b4577 | sgrS | -2.0 | -1.1 | small antisense RNA (NCBI) | compare |
| b1712 | ihfA | -2.0 | -3.1 | integration host factor subunit alpha (NCBI) | compare |
| b4458 | oxyS | -2.0 | -0.9 | global regulatory RNA (NCBI) | compare |
| b0688 | pgm | -1.9 | -3.2 | phosphoglucomutase (NCBI) | compare |
| b0439 | lon | -1.9 | -6.0 | DNA-binding ATP-dependent protease La (NCBI) | compare |
| b0500 | ybbD | -1.9 | -1.5 | hypothetical protein (RefSeq) | compare |
| b3778 | rep | -1.9 | -7.7 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b1946 | fliN | -1.9 | -2.8 | flagellar motor switch protein (NCBI) | compare |
| b2947 | gshB | -1.8 | -4.4 | glutathione synthetase (NCBI) | compare |
| b1058 | yceO | -1.8 | -1.3 | hypothetical protein (NCBI) | compare |
| b0082 | mraW | -1.8 | -4.3 | S-adenosyl-methyltransferase (NCBI) | compare |
| b0741 | pal | -1.8 | -2.9 | peptidoglycan-associated outer membrane lipoprotein (NCBI) | compare |
| b2808 | gcvA | -1.8 | -4.4 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3839 | tatC | -1.8 | -7.5 | TatABCE protein translocation system subunit (NCBI) | compare |
| b1167 | ymgC | -1.8 | -1.3 | hypothetical protein (NCBI) | compare |
| b3933 | ftsN | -1.8 | -9.5 | essential cell division protein (NCBI) | compare |
| b1362 | rzpR | -1.8 | -2.8 | putative Rac prophage endopeptidase (VIMSS) | compare |
| b3504 | yhiS | -1.8 | -2.2 | hypothetical protein (RefSeq) | compare |
| b4631 | ykgQ | -1.8 | -1.1 | no description | compare |
| b0949 | uup | -1.8 | -5.0 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b3631 | rfaG | -1.7 | -11.2 | glucosyltransferase I (NCBI) | compare |
| b4571 | wbbL | -1.7 | -4.0 | no description | compare |
| b2659 | b2659 | -1.7 | -2.0 | orf, hypothetical protein (VIMSS) | compare |
| b0740 | tolB | -1.7 | -4.4 | translocation protein TolB precursor (NCBI) | compare |
| b4239 | treC | -1.7 | -5.1 | trehalose-6-P hydrolase (NCBI) | compare |
| b4066 | yjcF | -1.7 | -1.8 | hypothetical protein (NCBI) | compare |
| b4704 | arrS | -1.7 | -1.0 | Antisense sRNA ArrS, function unknown (NCBI) | compare |
| b4128 | yjdK | -1.7 | -3.2 | hypothetical protein (NCBI) | compare |
| b0114 | aceE | -1.7 | -2.6 | pyruvate dehydrogenase subunit E1 (NCBI) | compare |
| b0722 | sdhD | -1.7 | -3.2 | succinate dehydrogenase cytochrome b556 small membrane subunit (NCBI) | compare |
| b4416 | rybA | -1.6 | -1.0 | unknown RNA (NCBI) | compare |
| b3791 | rffA | -1.6 | -5.8 | TDP-4-oxo-6-deoxy-D-glucose transaminase (NCBI) | compare |
| b3706 | trmE | -1.6 | -5.6 | tRNA modification GTPase (NCBI) | compare |
| b3237 | argR | -1.6 | -3.7 | arginine repressor (NCBI) | compare |
| b1074 | flgC | -1.6 | -1.1 | flagellar basal-body rod protein C (NCBI) | compare |
| b1292 | sapC | -1.6 | -2.6 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b0724 | sdhB | -1.6 | -6.5 | succinate dehydrogenase, FeS subunit (NCBI) | compare |
| b4177 | purA | -1.6 | -4.2 | adenylosuccinate synthetase (NCBI) | compare |
| b4481 | rffT | -1.6 | -5.6 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b1073 | flgB | -1.6 | -2.4 | flagellar basal-body rod protein B (NCBI) | compare |
| b2935 | tktA | -1.6 | -2.8 | transketolase 1, thiamin-binding (NCBI) | compare |
| b1307 | pspD | -1.6 | -1.1 | peripheral inner membrane phage-shock protein (NCBI) | compare |
| b1860 | ruvB | -1.6 | -1.6 | Holliday junction DNA helicase B (NCBI) | compare |
| b3512 | GadE | -1.6 | -2.2 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b2318 | truA | -1.6 | -3.0 | tRNA pseudouridine synthase A (NCBI) | compare |
| b1160 | elbA | -1.6 | -1.2 | hypothetical protein (NCBI) | compare |
| b1950 | fliR | -1.6 | -4.8 | flagellar biosynthesis protein R (NCBI) | conserved |
| b0014 | dnaK | -1.6 | -1.7 | molecular chaperone DnaK (NCBI) | compare |
| b3198 | kdsC | -1.6 | -1.8 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (NCBI) | compare |
| b2175 | spr | -1.6 | -2.9 | predicted peptidase, outer membrane lipoprotein (NCBI) | compare |
| b3027 | ygiZ | -1.6 | -1.9 | conserved inner membrane protein (NCBI) | compare |
| b3387 | dam | -1.6 | -6.8 | DNA adenine methylase (NCBI) | compare |
| b0279 | yagM | -1.6 | -3.0 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b2948 | yqgE | -1.5 | -2.7 | orf, hypothetical protein (VIMSS) | compare |
| b3806 | cyaA | -1.5 | -5.5 | adenylate cyclase (NCBI) | compare |
| b3863 | polA | -1.5 | -1.1 | DNA polymerase I (NCBI) | compare |
| b0739 | tolA | -1.5 | -3.0 | cell envelope integrity inner membrane protein TolA (NCBI) | compare |
| b3630 | rfaP | -1.5 | -8.3 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b3026 | qseC | -1.5 | -4.0 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b2847 | yqeI | -1.5 | -3.9 | predicted transcriptional regulator (NCBI) | compare |
| b1465 | narV | -1.5 | -1.4 | nitrate reductase 2 (NRZ), gamma subunit (NCBI) | compare |
| b2287 | nuoB | -1.5 | -2.7 | NADH dehydrogenase subunit B (NCBI) | compare |
| b3790 | rffC | -1.5 | -3.7 | TDP-fucosamine acetyltransferase (RefSeq) | compare |
| b2501 | ppk | -1.5 | -5.8 | polyphosphate kinase (NCBI) | compare |
| b2652 | ileY | -1.5 | -2.4 | tRNA-Ile (NCBI) | compare |
| b1939 | fliG | -1.5 | -2.8 | flagellar motor switch protein G (NCBI) | compare |
| b0617 | citD | -1.4 | -1.4 | citrate lyase, acyl carrier (gamma) subunit (NCBI) | compare |
| b2897 | ygfY | -1.4 | -2.9 | hypothetical protein (NCBI) | compare |
| b2277 | nuoM | -1.4 | -5.9 | NADH dehydrogenase subunit M (NCBI) | compare |
| b1891 | flhC | -1.4 | -2.3 | DNA-binding transcriptional dual regulator with FlhD (NCBI) | compare |
| b4590 | ybfK | -1.4 | -3.0 | hypothetical protein (RefSeq) | compare |
| b0326 | yahL | -1.4 | -5.0 | hypothetical protein (NCBI) | compare |
| b2859 | ygeO | -1.4 | -3.1 | hypothetical protein (RefSeq) | compare |
| b2432 | yfeY | -1.4 | -2.0 | hypothetical protein (NCBI) | compare |
| b3120 | yhaB | -1.4 | -1.8 | orf, hypothetical protein (VIMSS) | compare |
| b3940 | metL | -1.4 | -5.8 | bifunctional aspartate kinase II/homoserine dehydrogenase II (NCBI) | compare |
| b1187 | fadR | -1.4 | -2.3 | fatty acid metabolism regulator (NCBI) | compare |
| b4234 | yjgA | -1.4 | -2.9 | hypothetical protein (NCBI) | compare |
| b2281 | nuoI | -1.4 | -2.9 | NADH dehydrogenase subunit I (NCBI) | compare |
| b0723 | sdhA | -1.4 | -7.2 | succinate dehydrogenase flavoprotein subunit (NCBI) | compare |
| b2007 | yeeX | -1.4 | -2.3 | conserved protein (RefSeq) | compare |
| b3169 | nusA | -1.4 | -1.6 | transcription elongation factor NusA (NCBI) | compare |
| b0051 | ksgA | -1.4 | -3.6 | dimethyladenosine transferase (NCBI) | compare |
| b1293 | sapB | -1.3 | -1.4 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b3442 | yhhZ | -1.3 | -1.4 | hypothetical protein (NCBI) | compare |
| b0737 | tolQ | -1.3 | -2.5 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b0523 | purE | -1.3 | -2.4 | phosphoribosylaminoimidazole carboxylase catalytic subunit (NCBI) | compare |
| b2614 | grpE | -1.3 | -1.1 | heat shock protein (NCBI) | compare |
| b3870 | glnA | -1.3 | -2.5 | glutamine synthetase (NCBI) | compare |
| b1266 | yciV | -1.3 | -2.5 | hypothetical protein (NCBI) | compare |
| b3842 | rfaH | -1.3 | -2.8 | transcriptional activator RfaH (NCBI) | compare |
| b2820 | recB | -1.3 | -2.7 | exonuclease V (RecBCD complex), beta subunit (NCBI) | compare |
| b1075 | flgD | -1.3 | -1.9 | flagellar basal body rod modification protein D (NCBI) | compare |
| b2283 | nuoG | -1.3 | -6.0 | NADH:ubiquinone oxidoreductase, chain G (RefSeq) | compare |
| b3052 | rfaE | -1.3 | -3.0 | fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) | compare |
| b2055 | wcaE | -1.2 | -1.8 | predicted glycosyl transferase (NCBI) | compare |
| b0767 | ybhE | -1.2 | -2.7 | 6-phosphogluconolactonase (NCBI) | compare |
| b3035 | tolC | -1.2 | -4.3 | outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (VIMSS) | compare |
| b2625 | yfjI | -1.2 | -3.6 | CP4-57 prophage; predicted protein (NCBI) | compare |
| b2110 | yehC | -1.2 | -1.8 | predicted periplasmic pilin chaperone (NCBI) | compare |
| b1072 | flgA | -1.2 | -2.5 | flagellar basal body P-ring biosynthesis protein A (NCBI) | compare |
| b4593 | ymgI | -1.2 | -2.2 | hypothetical protein (RefSeq) | compare |
| b1540 | ydfH | -1.2 | -1.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0080 | fruR | -1.2 | -4.3 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b0122 | yacC | -1.2 | -2.5 | orf, hypothetical protein (VIMSS) | compare |
| b4191 | ulaR | -1.2 | -2.3 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3183 | obgE | -1.2 | -0.8 | GTPase involved in cell partioning and DNA repair (NCBI) | compare |
| b1084 | rne | -1.2 | -3.6 | fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein (NCBI) | compare |
| b1576 | ydfD | -1.2 | -1.4 | Qin prophage; predicted protein (NCBI) | compare |
| b4552 | yrhC | -1.2 | -0.8 | no description | compare |
| b3636 | rpmG | -1.2 | -1.2 | 50S ribosomal protein L33 (NCBI) | compare |
| b0721 | sdhC | -1.2 | -2.6 | succinate dehydrogenase cytochrome b556 large membrane subunit (NCBI) | compare |
| b2579 | yfiD | -1.2 | -1.4 | pyruvate formate lyase subunit (NCBI) | compare |
| b2934 | cmtB | -1.2 | -1.7 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b1949 | fliQ | -1.2 | -1.7 | flagellar biosynthesis protein Q (NCBI) | compare |
| b1943 | fliK | -1.2 | -3.2 | flagellar hook-length control protein (NCBI) | compare |
| b4373 | rimI | -1.2 | -1.6 | ribosomal-protein-alanine N-acetyltransferase (NCBI) | compare |
| b1175 | minD | -1.2 | -4.3 | membrane ATPase of the MinC-MinD-MinE system (NCBI) | compare |
| b3398 | yrfF | -1.2 | -2.8 | predicted inner membrane protein (NCBI) | compare |
| b0802 | ybiJ | -1.2 | -1.3 | hypothetical protein (NCBI) | compare |
| b2894 | xerD | -1.2 | -1.3 | site-specific tyrosine recombinase XerD (NCBI) | compare |
| b0683 | fur | -1.1 | -1.0 | ferric uptake regulator (NCBI) | compare |
| b2282 | nuoH | -1.1 | -2.1 | NADH dehydrogenase subunit H (NCBI) | compare |
| b3652 | recG | -1.1 | -5.1 | ATP-dependent DNA helicase (NCBI) | compare |
| b0430 | cyoC | -1.1 | -3.1 | cytochrome o ubiquinol oxidase subunit III (NCBI) | compare |
| b1159 | mcrA | -1.1 | -2.4 | e14 prophage; 5-methylcytosine-specific restriction endonuclease B (NCBI) | compare |
| b3002 | yqhA | -1.1 | -1.3 | hypothetical protein (NCBI) | compare |
| b2846 | yqeH | -1.1 | -0.6 | orf, hypothetical protein (VIMSS) | compare |
| b1890 | motA | -1.1 | -1.9 | flagellar motor protein MotA (NCBI) | compare |
| b3236 | mdh | -1.1 | -4.9 | malate dehydrogenase (NCBI) | compare |
| b4418 | sraB | -1.1 | -1.1 | unknown RNA (NCBI) | compare |
| b2071 | yegJ | -1.1 | -1.7 | hypothetical protein (NCBI) | compare |
| b2286 | nuoC | -1.1 | -4.5 | NADH:ubiquinone oxidoreductase, chain C,D (RefSeq) | compare |
| b2051 | wcaH | -1.1 | -0.9 | GDP-mannose mannosyl hydrolase (VIMSS) | compare |
| b0726 | sucA | -1.1 | -3.3 | alpha-ketoglutarate decarboxylase (NCBI) | compare |
| b2218 | rcsC | -1.1 | -5.4 | hybrid sensory kinase in two-component regulatory system with RcsB and YojN (RefSeq) | conserved |
| b4139 | aspA | -1.1 | -5.5 | aspartate ammonia-lyase (aspartase) (VIMSS) | compare |
| b0605 | ahpC | -1.1 | -2.7 | alkyl hydroperoxide reductase, C22 subunit (NCBI) | compare |
| b1048 | mdoG | -1.1 | -3.6 | glucan biosynthesis protein, periplasmic (NCBI) | compare |
| b0406 | tgt | -1.1 | -3.1 | queuine tRNA-ribosyltransferase (NCBI) | compare |
| b4146 | yjeK | -1.1 | -2.8 | predicted lysine aminomutase (NCBI) | compare |
| b1182 | hlyE | -1.0 | -2.2 | hemolysin E (VIMSS) | compare |
| b4509 | ylcG | -1.0 | -1.7 | DLP12 prophage; predicted protein (NCBI) | compare |
| b1948 | fliP | -1.0 | -2.4 | flagellar biosynthesis protein P (NCBI) | compare |
| b1258 | yciF | -1.0 | -2.3 | hypothetical protein (NCBI) | compare |
| b4215 | ytfI | -1.0 | -3.2 | hypothetical protein (NCBI) | compare |