Experiment set6IT073 for Pseudomonas putida KT2440

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
PP_4723 -4.7 -14.2 Carbamoyl-phosphate synthase large chain compare
PP_4999 -3.6 -2.5 dihydroorotase-like protein compare
PP_4724 -3.1 -6.7 Carbamoyl-phosphate synthase small chain compare
PP_0691 -2.7 -5.4 Glutamate 5-kinase compare
PP_4342 -2.4 -4.1 flagellar synthesis regulator, putative ATPase compare
PP_1428 -2.3 -2.6 Sigma factor AlgU negative regulatory protein compare
PP_1629 -1.9 -5.3 Protein RecA compare
PP_2903 -1.8 -3.7 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4122 -1.6 -2.3 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4961 -1.6 -2.1 putative Lipoprotein compare
PP_3902 -1.6 -4.1 conserved protein of unknown function compare
PP_2402 -1.5 -2.5 putative Sensor histidine kinase compare
PP_4792 -1.5 -3.2 conserved exported protein of unknown function compare
PP_0435 -1.4 -10.1 Peptidase, M23/M37 family compare
PP_2378 -1.4 -2.5 Fe/S biogenesis protein NfuA compare
PP_5329 -1.4 -4.8 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_5095 -1.4 -1.5 pyrroline-5-carboxylate reductase compare
PP_2581 -1.4 -1.9 conserved protein of unknown function compare
PP_1734 -1.4 -2.3 Probable septum site-determining protein MinC compare
PP_1468 -1.3 -2.7 Tyrosine recombinase XerD compare
PP_2442 -1.3 -2.8 conserved protein of unknown function, DUF480 family compare
PP_4373 -1.3 -8.6 Transcriptional regulator FleQ compare
PP_4874 -1.3 -1.1 50S ribosomal protein L9 compare
PP_4993 -1.3 -2.8 Glutathione synthetase compare
PP_2370 -1.3 -3.6 conserved protein of unknown function compare
PP_0803 -1.2 -7.3 Protein secretion ABC efflux system, membrane fusion protein compare
PP_3052 -1.2 -1.9 conserved protein of unknown function compare
PP_4904 -1.2 -6.2 Flagellar motor rotation protein compare
PP_5328 -1.2 -3.5 putative phosphate transport system permease protein compare
PP_1763 -1.2 -2.3 putative oxidoreductase compare
PP_5571 -1.1 -1.7 conserved protein of unknown function compare
PP_1216 -1.1 -1.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4265 -1.1 -2.6 DNA-binding transcriptional dual regulator compare
PP_4120 -1.1 -3.0 NADH-quinone oxidoreductase subunit B compare
PP_5359 -1.1 -2.4 CobW/P47K family protein compare
PP_1898 -1.1 -2.4 MotA/TolQ/ExbB proton channel family protein compare
PP_4722 -1.0 -3.5 Transcription elongation factor GreA compare
PP_2889 -1.0 -2.4 putative Transmembrane regulator PrtR compare
PP_2217 -1.0 -3.3 enoyl-CoA hydratase compare
PP_4726 -1.0 -2.5 Chaperone protein DnaJ compare
PP_2031 -1.0 -2.1 conserved protein of unknown function compare
PP_1217 -1.0 -2.3 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5204 -1.0 -4.3 conserved protein of unknown function compare
PP_0775 -1.0 -1.8 conserved protein of unknown function compare
PP_4880 -1.0 -5.3 exoribonuclease R compare
PP_0574 -1.0 -7.5 DNA-binding response regulator, LuxR family compare
PP_1598 -1.0 -3.8 regulatory intramembrane protein RIP zinc protease compare
PP_4799 -1.0 -2.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0001 -1.0 -1.2 probable chromosome-partitioning protein compare
PP_0806 -1.0 -8.9 putative Surface adhesion protein compare
PP_4004 -0.9 -2.5 DNA translocase FtsK compare
PP_2122 -0.9 -3.6 molybdenum cofactor biosynthesis protein B compare
PP_0888 -0.9 -1.6 Photosynthetic apparatus regulatory protein RegA compare
PP_4396 -0.9 -3.7 conserved protein of unknown function compare
PP_3258 -0.9 -2.8 conserved protein of unknown function compare
PP_4126 -0.9 -1.7 NADH-quinone oxidoreductase subunit I compare
PP_4375 -0.9 -5.4 flagellar chaperone, inhibits premature FliC assembly compare
PP_4964 -0.9 -1.2 D-erythrose 4-phosphate dehydrogenase compare
PP_0804 -0.9 -5.5 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_0805 -0.9 -5.6 Outer membrane efflux protein compare
PP_1609 -0.9 -2.1 conserved protein of unknown function compare
PP_4121 -0.9 -3.1 NADH-quinone oxidoreductase subunit C/D compare
PP_5279 -0.9 -2.0 conserved protein of unknown function compare
PP_0393 -0.8 -1.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5352 -0.8 -5.4 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_3318 -0.8 -2.1 conserved protein of unknown function compare
PP_0339 -0.8 -3.6 Pyruvate dehydrogenase E1 component compare
PP_5338 -0.8 -1.2 aspartate ammonia-lyase compare
PP_1664 -0.8 -2.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_0082 -0.8 -2.8 tryptophan synthase alpha chain compare
PP_4591 -0.8 -3.1 Ribonuclease D compare
PP_2550 -0.8 -1.8 putative transcriptional regulatory protein compare
PP_4696 -0.8 -2.3 Nitrogen regulation protein NR(I) compare
PP_1623 -0.8 -5.3 RNA polymerase, sigma S (sigma 38) factor compare
PP_4902 -0.8 -1.7 Oligoribonuclease compare
PP_3819 -0.8 -4.3 glutathione reductase (NADPH) compare
PP_0852 -0.8 -1.8 Transcriptional regulator, Cro/CI family compare
PP_4546 -0.8 -2.1 ATP-dependent helicase HrpA compare
PP_3409 -0.8 -1.7 putative Cobalamin biosynthesis protein cobE compare
PP_1099 -0.8 -2.1 Cold shock protein CapB compare
PP_4994 -0.8 -4.1 conserved protein of unknown function compare
PP_5327 -0.8 -4.2 putative phosphate ABC transporter, permease subunit compare
PP_5217 -0.8 -7.0 Polyphosphate kinase compare
PP_4895 -0.8 -1.8 tRNA dimethylallyltransferase compare
PP_1038 -0.8 -1.5 conserved protein of unknown function compare
PP_2336 -0.8 -1.9 aconitate hydratase 1 compare
PP_t10 -0.8 -2.2 tRNA-Pro compare
PP_2309 -0.8 -1.4 conserved protein of unknown function compare
PP_4380 -0.8 -6.3 Flagellar hook-associated protein FlgL compare
PP_2615 -0.8 -2.0 hemolysin-coregulated protein compare
PP_5267 -0.8 -1.4 putative cytochrome c5 compare
PP_4905 -0.8 -4.3 Flagellar motor rotation protein compare
PP_5007 -0.7 -1.3 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_5017 -0.7 -1.2 Sec-independent protein translocase protein TatB compare
PP_1562 -0.7 -1.8 putative Phage terminase, small subunit compare
PP_4340 -0.7 -2.0 response regulator for chemotactic signal transduction compare
PP_2929 -0.7 -4.5 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_5310 -0.7 -2.7 junction-specific ATP-dependent DNA helicase compare
PP_1994 -0.7 -1.4 tRNA pseudouridine (38-40)synthase compare
PP_3164 -0.7 -2.4 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_0368 -0.7 -4.9 putative Acyl-CoA dehydrogenase compare
PP_0957 -0.7 -1.7 D-arabinose 5-phosphate isomerase compare
PP_4354 -0.7 -2.9 flagellar export apparatus subunit compare
PP_0769 -0.7 -3.3 Sensor histidine kinase compare
PP_4989 -0.7 -2.3 Protein PilJ compare
PP_4199 -0.7 -1.2 putative Lipoprotein compare
PP_4879 -0.7 -2.4 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_4482 -0.7 -2.7 Transcriptional regulator, AraC family compare
PP_2631 -0.7 -1.3 putative cellulose biosynthesis, BcsF/YhjT compare
PP_5053 -0.7 -2.9 Protein-export protein SecB compare
PP_5232 -0.7 -1.4 conserved protein of unknown function compare
PP_4383 -0.7 -3.7 Flagellar P-ring protein compare
PP_4378 -0.7 -5.6 flagellin, filament structural protein compare
PP_3407 -0.7 -2.3 conserved protein of unknown function compare
PP_5198 -0.7 -1.8 conserved protein of unknown function compare
PP_1702 -0.7 -1.8 Recombination-associated protein RdgC compare
PP_2222 -0.7 -2.8 conserved protein of unknown function compare
PP_4337 -0.6 -3.8 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_2387 -0.6 -1.3 conserved protein of unknown function compare
PP_2087 -0.6 -1.3 CmpX protein compare
PP_4981 -0.6 -2.1 polyisoprene-binding protein, acidic stress response factor compare
PP_0978 -0.6 -2.0 conserved protein of unknown function compare
PP_2417 -0.6 -2.3 putative Iron ABC transporter, permease protein compare
PP_2409 -0.6 -2.4 cobalt-zinc-cadmium resistance protein compare
PP_3649 -0.6 -1.8 Transcriptional regulator, GntR family compare
PP_2144 -0.6 -2.1 Transcriptional regulator, TetR family compare
PP_4811 -0.6 -2.4 Gamma-glutamyl phosphate reductase compare
PP_4875 -0.6 -2.5 conserved membrane protein of unknown function compare
PP_2858 -0.6 -2.0 conserved exported protein of unknown function compare
PP_0123 -0.6 -3.3 DNA polymerase I, 5 compare
PP_4171 -0.6 -5.6 conserved exported protein of unknown function compare
PP_4361 -0.6 -3.5 Flagellar hook-length control protein FliK compare
PP_2616 -0.6 -2.4 conserved protein of unknown function compare
PP_2540 -0.6 -2.1 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_4131 -0.6 -2.5 NADH-quinone oxidoreductase subunit N compare
PP_2000 -0.6 -1.6 amidophosphoribosyl transferase compare
PP_3758 -0.6 -3.4 Response regulator/sensor histidine kinase compare
PP_5014 -0.6 -1.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_3243 -0.6 -1.8 Acetyltransferase, GNAT family compare
PP_0666 -0.6 -2.2 conserved protein of unknown function compare
PP_1142 -0.6 -1.0 conserved protein of unknown function compare
PP_3999 -0.6 -3.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5706 -0.6 -0.9 Sec translocation complex - SecG subunit compare
PP_4611 -0.6 -2.7 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_4356 -0.6 -2.4 Flagellar protein FliO compare
PP_4368 -0.6 -3.6 flagellar motor switch protein compare
PP_4381 -0.6 -4.8 Flagellar hook-associated protein FlgK compare
PP_1110 -0.6 -2.6 serine acetyltransferase compare
PP_1845 -0.6 -2.1 Enoyl-CoA hydratase/isomerase family protein compare
PP_2388 -0.6 -1.5 Transporter, LysE family compare
PP_3643 -0.6 -1.7 putative Oxidoreductase compare
PP_3398 -0.6 -1.9 putative Curli fiber surface-exposed nucleator CsgB compare
PP_3730 -0.6 -1.2 Transcriptional regulatory protein AruR compare
PP_1319 -0.6 -3.5 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_5230 -0.6 -1.5 Tyrosine recombinase XerC compare
PP_4910 -0.6 -1.1 conserved protein of unknown function compare
PP_1783 -0.6 -0.4 dTDP-glucose pyrophosphorylase compare
PP_1673 -0.6 -2.2 cobyrinate a,c-diamide synthase compare
PP_4261 -0.6 -3.1 cation-transporting P-type ATPase compare
PP_1654 -0.6 -1.4 cysteine synthase B compare
PP_1389 -0.6 -3.2 Oxaloacetate decarboxylase compare
PP_t29 -0.6 -1.2 tRNA-Ala compare
PP_2857 -0.6 -1.6 conserved exported protein of unknown function compare
PP_2575 -0.6 -1.3 conserved exported protein of unknown function compare
PP_4358 -0.6 -3.9 flagellar synthesis, switching and energizing component compare
PP_2568 -0.6 -0.9 Ring-cleaving dioxygenase compare
PP_2932 -0.6 -3.6 Amidase family protein compare
PP_4130 -0.5 -1.8 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_5090 -0.5 -1.1 putative cell division protein compare
PP_0244 -0.5 -2.7 conserved protein of unknown function compare
PP_1214 -0.5 -1.4 putative transcriptional regulatory protein compare
PP_1906 -0.5 -1.9 ribosomal large subunit pseudouridine synthase C compare
PP_1318 -0.5 -3.1 Cytochrome b compare
PP_0872 -0.5 -2.2 Peptide chain release factor 3 compare
PP_4820 -0.5 -3.0 tRNA-dihydrouridine synthase B compare
PP_2403 -0.5 -1.0 Chemotaxis protein CheY compare
PP_1938 -0.5 -1.2 conserved protein of unknown function compare
PP_3898 -0.5 -2.1 conserved protein of unknown function compare
PP_4376 -0.5 -4.3 flagellar filament capping protein compare
PP_4391 -0.5 -3.2 flagellar basal-body rod protein FlgB compare
PP_5201 -0.5 -1.0 conserved protein of unknown function, UPF0149 family compare
PP_4260 -0.5 -2.3 conserved protein of unknown function compare
PP_3596 -0.5 -3.1 D-lysine oxidase compare
PP_2640 -0.5 -1.8 Acetyltransferase, GNAT family compare
PP_1644 -0.5 -1.9 NAD(P)H dehydrogenase (quinone) compare
PP_5603 -0.5 -2.7 putative FAD dependent oxidoreductase compare
PP_5711 -0.5 -2.5 protein of unknown function compare
PP_1410 -0.5 -1.2 conserved protein of unknown function compare
PP_0063 -0.5 -0.9 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_4556 -0.5 -2.1 conserved protein of unknown function compare
PP_5209 -0.5 -2.9 conserved exported protein of unknown function compare
PP_4367 -0.5 -1.8 Flagellar assembly protein FliH compare
PP_0841 -0.5 -1.7 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_3904 -0.5 -2.1 conserved protein of unknown function compare
PP_0959 -0.5 -1.4 phospholipid ABC transporter compare
PP_4341 -0.5 -2.9 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_4620 -0.5 -3.5 Fumarylacetoacetase compare
PP_1111 -0.5 -2.9 putative Synthetase compare
PP_1976 -0.5 -3.0 HlyD family secretion protein compare
PP_0025 -0.5 -1.0 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in lb experiments