Experiment set6IT073 for Escherichia coli BW25113

inner cut, LB soft agar motility assay

Group: motility
Media: LB + Agar (3 g/L)
Culturing: Keio_ML9, Agar plate, Aerobic, at 30 (C), shaken=0 rpm, (Solid)
By: Mark on 2/2/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 11 genes in this experiment

For motility Agar in Escherichia coli BW25113

For motility Agar across organisms

SEED Subsystems

Subsystem	#Specific
Flagellum	6
Flagellar motility	2
Bacterial Chemotaxis	1
Cysteine Biosynthesis	1
DNA repair, bacterial	1
Listeria phi-A118-like prophages	1
Two-component regulatory systems in Campylobacter	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Oxidative phosphorylation
• Photosynthesis
• Cysteine metabolism
• Selenoamino acid metabolism
• Sulfur metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
L-cysteine biosynthesis I	2	2	1
L-cysteine biosynthesis VII (from S-sulfo-L-cysteine)	4	3	1
seleno-amino acid biosynthesis (plants)	5	3	1
hydrogen sulfide biosynthesis II (mammalian)	6	1	1
superpathway of sulfate assimilation and cysteine biosynthesis	9	9	1
superpathway of seleno-compound metabolism	19	6	1