Experiment set6IT072 for Pseudomonas putida KT2440

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
PP_4723 -4.9 -13.1 Carbamoyl-phosphate synthase large chain compare
PP_4999 -3.6 -2.4 dihydroorotase-like protein compare
PP_4724 -3.5 -6.9 Carbamoyl-phosphate synthase small chain compare
PP_0691 -2.8 -5.5 Glutamate 5-kinase compare
PP_4126 -2.4 -3.2 NADH-quinone oxidoreductase subunit I compare
PP_4342 -2.2 -4.1 flagellar synthesis regulator, putative ATPase compare
PP_2402 -2.2 -3.2 putative Sensor histidine kinase compare
PP_0846 -2.1 -2.4 DnaK-like molecular chaperone specific for IscU compare
PP_4122 -2.1 -2.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1994 -2.0 -2.9 tRNA pseudouridine (38-40)synthase compare
PP_4874 -1.7 -1.1 50S ribosomal protein L9 compare
PP_4373 -1.6 -10.1 Transcriptional regulator FleQ compare
PP_1629 -1.5 -4.6 Protein RecA compare
PP_2337 -1.4 -2.0 aconitate isomerase compare
PP_2378 -1.4 -2.5 Fe/S biogenesis protein NfuA compare
PP_5329 -1.4 -4.9 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4120 -1.4 -3.3 NADH-quinone oxidoreductase subunit B compare
PP_1468 -1.3 -2.1 Tyrosine recombinase XerD compare
PP_1824 -1.3 -2.1 Smr domain protein compare
PP_1734 -1.3 -2.2 Probable septum site-determining protein MinC compare
PP_2889 -1.3 -4.4 putative Transmembrane regulator PrtR compare
PP_4265 -1.3 -3.7 DNA-binding transcriptional dual regulator compare
PP_0435 -1.3 -9.0 Peptidase, M23/M37 family compare
PP_0804 -1.3 -7.2 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_2144 -1.3 -2.8 Transcriptional regulator, TetR family compare
PP_4994 -1.3 -5.1 conserved protein of unknown function compare
PP_4124 -1.2 -3.2 NADH-quinone oxidoreductase subunit G compare
PP_3365 -1.2 -1.6 Acetolactate synthase compare
PP_5327 -1.2 -4.7 putative phosphate ABC transporter, permease subunit compare
PP_0803 -1.2 -8.0 Protein secretion ABC efflux system, membrane fusion protein compare
PP_5604 -1.2 -2.6 putative subtilisin-like serine protease compare
PP_2633 -1.2 -1.5 conserved protein of unknown function compare
PP_1214 -1.2 -2.3 putative transcriptional regulatory protein compare
PP_1906 -1.1 -3.8 ribosomal large subunit pseudouridine synthase C compare
PP_2160 -1.1 -3.0 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_2903 -1.1 -2.8 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4905 -1.1 -4.7 Flagellar motor rotation protein compare
PP_1268 -1.1 -2.6 putative HtrA suppressor protein sohA compare
PP_0805 -1.1 -7.4 Outer membrane efflux protein compare
PP_3649 -1.1 -3.5 Transcriptional regulator, GntR family compare
PP_1186 -1.1 -1.6 two component system DNA-binding transcriptional dual regulator compare
PP_0806 -1.1 -9.8 putative Surface adhesion protein compare
PP_1598 -1.1 -4.3 regulatory intramembrane protein RIP zinc protease compare
PP_3245 -1.1 -2.3 conserved protein of unknown function compare
PP_4004 -1.0 -2.6 DNA translocase FtsK compare
PP_0888 -1.0 -1.8 Photosynthetic apparatus regulatory protein RegA compare
PP_4895 -1.0 -2.0 tRNA dimethylallyltransferase compare
PP_4121 -1.0 -3.3 NADH-quinone oxidoreductase subunit C/D compare
PP_1623 -1.0 -6.1 RNA polymerase, sigma S (sigma 38) factor compare
PP_2442 -1.0 -2.7 conserved protein of unknown function, DUF480 family compare
PP_4880 -1.0 -5.0 exoribonuclease R compare
PP_5230 -1.0 -2.2 Tyrosine recombinase XerC compare
PP_4171 -1.0 -8.2 conserved exported protein of unknown function compare
PP_5328 -0.9 -2.4 putative phosphate transport system permease protein compare
PP_2433 -0.9 -2.3 conserved protein of unknown function compare
PP_5093 -0.9 -1.2 twitching motility protein compare
PP_t29 -0.9 -1.9 tRNA-Ala compare
PP_1898 -0.9 -3.0 MotA/TolQ/ExbB proton channel family protein compare
PP_5198 -0.9 -2.4 conserved protein of unknown function compare
PP_4528 -0.9 -1.6 conserved protein of unknown function compare
PP_0872 -0.9 -3.5 Peptide chain release factor 3 compare
PP_2475 -0.9 -3.3 Transcriptional regulator, TetR family compare
PP_4910 -0.9 -1.4 conserved protein of unknown function compare
PP_0214 -0.9 -3.2 4-aminobutyrate aminotransferase compare
PP_1237 -0.8 -1.5 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5014 -0.8 -2.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_0574 -0.8 -5.7 DNA-binding response regulator, LuxR family compare
PP_4707 -0.8 -1.2 OsmY-related protein compare
PP_5217 -0.8 -6.4 Polyphosphate kinase compare
PP_4253 -0.8 -2.7 cytochrome c oxidase subunit, cbb3-type compare
PP_4904 -0.8 -4.4 Flagellar motor rotation protein compare
PP_4993 -0.8 -1.8 Glutathione synthetase compare
PP_1826 -0.8 -1.3 Hydrolase, isochorismatase family compare
PP_5706 -0.8 -1.1 Sec translocation complex - SecG subunit compare
PP_5303 -0.8 -3.1 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0768 -0.8 -3.7 Response regulator/TPR domain protein compare
PP_4546 -0.8 -1.9 ATP-dependent helicase HrpA compare
PP_4129 -0.8 -2.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5471 -0.8 -1.9 putative response regulator receiver protein compare
PP_5028 -0.8 -1.9 proline iminopeptidase compare
PP_2000 -0.8 -2.0 amidophosphoribosyl transferase compare
PP_1702 -0.8 -2.0 Recombination-associated protein RdgC compare
PP_5359 -0.8 -1.9 CobW/P47K family protein compare
PP_1318 -0.7 -4.4 Cytochrome b compare
PP_5053 -0.7 -2.7 Protein-export protein SecB compare
PP_0833 -0.7 -0.7 queuine tRNA-ribosyltransferase compare
PP_2929 -0.7 -4.2 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_3576 -0.7 -3.2 putative Transmembrane sensor compare
PP_2540 -0.7 -2.6 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_1217 -0.7 -1.8 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0393 -0.7 -0.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4099 -0.7 -6.9 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1650 -0.7 -6.5 Sensor protein GacS compare
PP_4722 -0.7 -1.8 Transcription elongation factor GreA compare
PP_5000 -0.7 -1.3 peptidase component of the ATP-dependent HslVU protease compare
PP_1719 -0.7 -3.9 Tail-specific protease prc compare
PP_1763 -0.7 -1.5 putative oxidoreductase compare
PP_5095 -0.7 -0.9 pyrroline-5-carboxylate reductase compare
PP_4159 -0.7 -1.4 Potassium-transporting ATPase C chain compare
PP_2060 -0.7 -1.1 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_3508 -0.7 -2.1 Protein CobW compare
PP_3938 -0.7 -1.9 conserved protein of unknown function compare
PP_4561 -0.7 -1.2 stress response protein compare
PP_2748 -0.7 -1.7 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_2087 -0.7 -1.4 CmpX protein compare
PP_2203 -0.7 -1.1 conserved protein of unknown function compare
PP_4227 -0.7 -1.5 conserved protein of unknown function compare
PP_3831 -0.6 -3.9 conserved protein of unknown function compare
PP_4375 -0.6 -4.5 flagellar chaperone, inhibits premature FliC assembly compare
PP_t11 -0.6 -1.8 tRNA-Lys compare
PP_4337 -0.6 -2.8 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_1664 -0.6 -2.3 phosphoribosylglycinamide formyltransferase 1 compare
PP_2581 -0.6 -1.3 conserved protein of unknown function compare
PP_4669 -0.6 -1.9 OmpA family protein compare
PP_3506 -0.6 -2.2 Magnesium chelatase, subunit ChII compare
PP_1366 -0.6 -1.0 Transcriptional regulator MvaT, P16 subunit compare
PP_0368 -0.6 -4.3 putative Acyl-CoA dehydrogenase compare
PP_1111 -0.6 -3.5 putative Synthetase compare
PP_0627 -0.6 -2.1 conserved protein of unknown function compare
PP_2029 -0.6 -1.6 von Willebrand factor type A domain protein compare
PP_2499 -0.6 -1.3 conserved protein of unknown function compare
PP_3539 -0.6 -1.4 putative Transcriptional regulator compare
PP_2932 -0.6 -3.8 Amidase family protein compare
PP_4131 -0.6 -2.5 NADH-quinone oxidoreductase subunit N compare
PP_2379 -0.6 -2.7 putative cytochrome oxidase biogenesis protein compare
PP_t12 -0.6 -0.8 tRNA-Thr compare
PP_0566 -0.6 -0.8 translation-related factor compare
PP_4591 -0.6 -1.9 Ribonuclease D compare
PP_4726 -0.6 -1.6 Chaperone protein DnaJ compare
PP_5063 -0.6 -2.7 betaine aldehyde dehydrogenase, NAD-dependent compare
PP_5352 -0.6 -4.0 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_0959 -0.6 -1.8 phospholipid ABC transporter compare
PP_1812 -0.6 -1.6 conserved protein of unknown function compare
PP_3052 -0.6 -1.1 conserved protein of unknown function compare
PP_0769 -0.6 -2.9 Sensor histidine kinase compare
PP_0258 -0.6 -2.2 regulator of murein cross-linking compare
PP_0339 -0.6 -2.4 Pyruvate dehydrogenase E1 component compare
PP_2322 -0.6 -3.4 Major outer membrane lipoprotein compare
PP_1319 -0.6 -3.0 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_2864 -0.6 -2.4 conserved protein of unknown function compare
PP_3773 -0.6 -1.7 conserved protein of unknown function compare
PP_1109 -0.6 -4.4 Transcriptional regulator, GntR family compare
PP_1675 -0.6 -3.7 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_t64 -0.6 -1.7 tRNA-Gly compare
PP_3999 -0.6 -2.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0126 -0.6 -1.3 Cytochrome c4 compare
PP_5594 -0.6 -1.2 conserved protein of unknown function compare
PP_5483 -0.5 -1.0 conserved protein of unknown function compare
PP_4611 -0.5 -2.5 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_4629 -0.5 -2.7 Sensory box protein compare
PP_2939 -0.5 -2.1 toxin of the YefM-YoeB antitoxin/toxin complex and DNA-binding transcriptional repressor compare
PP_4597 -0.5 -2.6 Cyclic pyranopterin monophosphate synthase compare
PP_5001 -0.5 -1.8 protease HslVU, ATPase component compare
PP_2387 -0.5 -1.2 conserved protein of unknown function compare
PP_2976 -0.5 -1.1 putative transposase compare
PP_3903 -0.5 -1.0 conserved protein of unknown function compare
PP_5146 -0.5 -2.9 RNA pyrophosphohydrolase compare
PP_1007 -0.5 -3.1 putative Transmembrane sensor compare
PP_4340 -0.5 -2.3 response regulator for chemotactic signal transduction compare
PP_1935 -0.5 -1.6 Transcriptional regulator, Cro/CI family compare
PP_1609 -0.5 -1.2 conserved protein of unknown function compare
PP_4835 -0.5 -1.7 conserved exported protein of unknown function compare
PP_4268 -0.5 -0.9 nucleoid-associated broad specificity regulator compare
PP_4952 -0.5 -1.0 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_2737 -0.5 -1.0 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_1673 -0.5 -2.9 cobyrinate a,c-diamide synthase compare
PP_4613 -0.5 -3.7 outer membrane ferric citrate porin compare
PP_3040 -0.5 -1.9 Pyocin R2_PP, holin compare
PP_5473 -0.5 -0.8 putative transcriptional regulator, LuxR family compare
PP_2336 -0.5 -1.3 aconitate hydratase 1 compare
PP_4684 -0.5 -3.0 conserved protein of unknown function with kinase-like domain compare
PP_4208 -0.5 -2.8 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_1428 -0.5 -0.9 Sigma factor AlgU negative regulatory protein compare
PP_5084 -0.5 -3.2 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_5451 -0.5 -1.9 protein of unknown function compare
PP_3481 -0.5 -1.2 conserved exported protein of unknown function compare
PP_3123 -0.5 -2.9 acetoacetyl CoA-transferase (subunit B) compare
PP_4799 -0.5 -1.3 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5486 -0.5 -1.2 conserved protein of unknown function compare
PP_2413 -0.5 -3.8 GGDEF family protein compare
PP_3496 -0.5 -1.6 Endoribonuclease L-PSP compare
PP_1079 -0.5 -2.6 Ornithine carbamoyltransferase compare
PP_2503 -0.5 -1.4 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_0855 -0.5 -0.8 conserved protein of unknown function compare
PP_0984 -0.5 -2.3 conserved membrane protein of unknown function compare
PP_1490 -0.5 -3.4 Probable biofilm formation methyltransferase WspC compare
PP_2801 -0.5 -2.6 gamma-aminobutyraldehyde dehydrogenase compare
PP_2372 -0.5 -3.4 putative Periplasmic sugar-binding protein compare
PP_4909 -0.5 -2.7 phosphoserine phosphatase compare
PP_5534 -0.5 -2.3 protein of unknown function compare
PP_3398 -0.5 -1.5 putative Curli fiber surface-exposed nucleator CsgB compare
PP_2842 -0.5 -2.5 urease accessory protein compare
PP_2575 -0.5 -0.9 conserved exported protein of unknown function compare
PP_4721 -0.5 -2.0 conserved membrane protein of unknown function compare
PP_5456 -0.5 -1.0 conserved protein of unknown function compare
PP_5310 -0.5 -1.7 junction-specific ATP-dependent DNA helicase compare
PP_5699 -0.5 -2.3 putative iron uptake protein compare
PP_1871 -0.5 -2.8 Protease HtpX compare
PP_0694 -0.5 -1.8 conserved protein of unknown function compare
PP_1389 -0.5 -2.6 Oxaloacetate decarboxylase compare


Specific Phenotypes

For 1 genes in this experiment