| | gene | name | fitness | t score | description | |
|---|
| b3027 | ygiZ | -5.3 | -2.9 | conserved inner membrane protein (NCBI) | compare |
| b2567 | rnc | -4.8 | -2.3 | ribonuclease III (NCBI) | compare |
| b3483 | yhhH | -4.7 | -1.5 | orf, hypothetical protein (VIMSS) | compare |
| b4402 | yjjY | -4.6 | -1.4 | hypothetical protein (NCBI) | compare |
| b2330 | yfcB | -4.4 | -2.5 | putative adenine-specific methylase (VIMSS) | compare |
| b0683 | fur | -4.3 | -2.0 | ferric uptake regulator (NCBI) | compare |
| b3386 | rpe | -4.2 | -2.9 | ribulose-phosphate 3-epimerase (NCBI) | compare |
| b1882 | cheY | -4.0 | -1.2 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b4443 | gcvB | -4.0 | -2.0 | GcvB sRNA gene divergent from gcvA (RefSeq) | compare |
| b0630 | lipB | -3.9 | -3.2 | protein of lipoate biosynthesis (VIMSS) | compare |
| b1167 | ymgC | -3.9 | -2.0 | hypothetical protein (NCBI) | compare |
| b0500 | ybbD | -3.8 | -2.2 | hypothetical protein (RefSeq) | compare |
| b3162 | deaD | -3.7 | -7.6 | inducible ATP-independent RNA helicase (VIMSS) | compare |
| b4704 | arrS | -3.6 | -1.5 | Antisense sRNA ArrS, function unknown (NCBI) | compare |
| b1850 | eda | -3.6 | -2.7 | keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (NCBI) | compare |
| b0737 | tolQ | -3.4 | -5.5 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b3725 | pstB | -3.3 | -5.5 | phosphate transporter subunit (NCBI) | compare |
| b3463 | ftsE | -3.3 | -8.3 | predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b3778 | rep | -3.3 | -11.8 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b3164 | pnp | -3.3 | -3.8 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b2297 | pta | -3.2 | -2.7 | phosphate acetyltransferase (NCBI) | compare |
| b3842 | rfaH | -3.2 | -6.6 | transcriptional activator RfaH (NCBI) | compare |
| b0222 | lpcA | -3.2 | -4.7 | phosphoheptose isomerase (NCBI) | compare |
| b0439 | lon | -3.2 | -8.8 | DNA-binding ATP-dependent protease La (NCBI) | compare |
| b3026 | qseC | -3.2 | -7.5 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b0200 | gmhB | -3.1 | -2.8 | hypothetical protein (NCBI) | compare |
| b2620 | smpB | -3.1 | -2.3 | SsrA-binding protein (NCBI) | compare |
| b4375 | prfC | -3.1 | -11.5 | peptide chain release factor 3 (NCBI) | compare |
| b2935 | tktA | -3.1 | -5.7 | transketolase 1, thiamin-binding (NCBI) | compare |
| b1182 | hlyE | -3.0 | -3.5 | hemolysin E (VIMSS) | compare |
| b2830 | nudH | -3.0 | -2.7 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b2110 | yehC | -3.0 | -4.5 | predicted periplasmic pilin chaperone (NCBI) | compare |
| b3621 | rfaC | -3.0 | -10.1 | ADP-heptose:LPS heptosyl transferase I (NCBI) | compare |
| b2699 | recA | -3.0 | -3.1 | recombinase A (NCBI) | compare |
| b3811 | xerC | -2.9 | -5.0 | site-specific tyrosine recombinase XerC (NCBI) | compare |
| b1860 | ruvB | -2.9 | -2.4 | Holliday junction DNA helicase B (NCBI) | compare |
| b3290 | trkA | -2.8 | -6.5 | potassium transporter peripheral membrane component (NCBI) | compare |
| b1075 | flgD | -2.8 | -3.0 | flagellar basal body rod modification protein D (NCBI) | compare |
| b3741 | gidA | -2.8 | -10.8 | glucose-inhibited division protein A (NCBI) | compare |
| b3977 | tyrU | -2.8 | -1.0 | tRNA-Tyr (NCBI) | compare |
| b3121 | yhaC | -2.8 | -2.3 | hypothetical protein (NCBI) | compare |
| b3390 | aroK | -2.7 | -2.8 | shikimate kinase I (NCBI) | compare |
| b3504 | yhiS | -2.7 | -2.8 | hypothetical protein (RefSeq) | compare |
| b3500 | gor | -2.7 | -2.6 | glutathione reductase (NCBI) | compare |
| b1236 | galU | -2.7 | -7.6 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b4042 | dgkA | -2.7 | -4.6 | diacylglycerol kinase (NCBI) | compare |
| b3052 | rfaE | -2.7 | -7.9 | fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) | compare |
| b0740 | tolB | -2.7 | -4.9 | translocation protein TolB precursor (NCBI) | compare |
| b2259 | pmrD | -2.7 | -1.1 | polymyxin resistance protein B (VIMSS) | compare |
| b0739 | tolA | -2.7 | -5.3 | cell envelope integrity inner membrane protein TolA (NCBI) | compare |
| b0014 | dnaK | -2.6 | -2.2 | molecular chaperone DnaK (NCBI) | compare |
| b0888 | trxB | -2.6 | -3.9 | thioredoxin reductase, FAD/NAD(P)-binding (NCBI) | compare |
| b3979 | thrT | -2.6 | -1.0 | tRNA-Thr (NCBI) | compare |
| b4201 | priB | -2.6 | -2.1 | primosomal replication protein N (NCBI) | compare |
| b4651 | yibW | -2.5 | -2.1 | no description | compare |
| b3806 | cyaA | -2.5 | -9.1 | adenylate cyclase (NCBI) | compare |
| b3728 | pstS | -2.5 | -6.8 | phosphate transporter subunit (NCBI) | compare |
| b0738 | tolR | -2.5 | -4.1 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b0232 | yafN | -2.5 | -1.2 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b0890 | ftsK | -2.4 | -9.2 | DNA-binding membrane protein required for chromosome resolution and partitioning (NCBI) | compare |
| b4593 | ymgI | -2.4 | -2.7 | hypothetical protein (RefSeq) | compare |
| b3169 | nusA | -2.4 | -2.2 | transcription elongation factor NusA (NCBI) | compare |
| b3619 | rfaD | -2.4 | -5.0 | ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding (NCBI) | compare |
| b0118 | acnB | -2.4 | -4.8 | aconitate hydratase (NCBI) | compare |
| b2897 | ygfY | -2.4 | -2.5 | hypothetical protein (NCBI) | compare |
| b4177 | purA | -2.3 | -5.2 | adenylosuccinate synthetase (NCBI) | compare |
| b3792 | wzxE | -2.3 | -7.4 | O-antigen translocase (NCBI) | compare |
| b3609 | secB | -2.2 | -3.5 | export protein SecB (NCBI) | compare |
| b1941 | fliI | -2.2 | -7.1 | flagellum-specific ATP synthase (NCBI) | conserved |
| b4603 | rseX | -2.2 | -1.0 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b3462 | ftsX | -2.2 | -5.1 | predicted transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b4279 | yjhB | -2.2 | -3.3 | putative transport protein (VIMSS) | compare |
| b1891 | flhC | -2.2 | -4.3 | DNA-binding transcriptional dual regulator with FlhD (NCBI) | compare |
| b2822 | recC | -2.2 | -5.3 | exonuclease V (RecBCD complex), gamma chain (NCBI) | compare |
| b3198 | kdsC | -2.1 | -3.5 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (NCBI) | compare |
| b3620 | rfaF | -2.1 | -4.7 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b1001 | yccE | -2.1 | -3.0 | hypothetical protein (NCBI) | compare |
| b4239 | treC | -2.1 | -5.5 | trehalose-6-P hydrolase (NCBI) | compare |
| b2650 | ypjC | -2.1 | -1.2 | hypothetical protein (RefSeq) | compare |
| b3613 | yibP | -2.1 | -5.5 | putative membrane protein (VIMSS) | compare |
| b3183 | obgE | -2.1 | -1.4 | GTPase involved in cell partioning and DNA repair (NCBI) | compare |
| b1804 | rnd | -2.0 | -4.5 | ribonuclease D (NCBI) | compare |
| b3706 | trmE | -2.0 | -7.4 | tRNA modification GTPase (NCBI) | compare |
| b1070 | flgN | -2.0 | -1.0 | export chaperone for FlgK and FlgL (NCBI) | compare |
| b0741 | pal | -2.0 | -3.8 | peptidoglycan-associated outer membrane lipoprotein (NCBI) | compare |
| b1505 | ydeT | -2.0 | -3.7 | hypothetical protein (RefSeq) | compare |
| b3512 | GadE | -1.9 | -3.2 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b4416 | rybA | -1.9 | -1.2 | unknown RNA (NCBI) | compare |
| b3631 | rfaG | -1.9 | -12.8 | glucosyltransferase I (NCBI) | compare |
| b0605 | ahpC | -1.9 | -3.0 | alkyl hydroperoxide reductase, C22 subunit (NCBI) | compare |
| b2808 | gcvA | -1.9 | -4.5 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3630 | rfaP | -1.9 | -9.5 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b1948 | fliP | -1.9 | -3.6 | flagellar biosynthesis protein P (NCBI) | compare |
| b2071 | yegJ | -1.9 | -2.6 | hypothetical protein (NCBI) | compare |
| b1545 | pinQ | -1.9 | -1.1 | Qin prophage; predicted site-specific recombinase (NCBI) | compare |
| b1058 | yceO | -1.8 | -1.3 | hypothetical protein (NCBI) | compare |
| b1925 | fliS | -1.8 | -3.5 | flagellar protein FliS (NCBI) | conserved |
| b2953 | yggU | -1.8 | -1.7 | orf, hypothetical protein (VIMSS) | compare |
| b1712 | ihfA | -1.8 | -3.0 | integration host factor subunit alpha (NCBI) | compare |
| b3791 | rffA | -1.8 | -6.2 | TDP-4-oxo-6-deoxy-D-glucose transaminase (NCBI) | compare |
| b3199 | yrbK | -1.8 | -2.0 | hypothetical protein (NCBI) | compare |
| b4172 | hfq | -1.8 | -1.8 | RNA-binding protein Hfq (NCBI) | compare |
| b1079 | flgH | -1.8 | -2.4 | flagellar L-ring protein precursor H (NCBI) | compare |
| b0722 | sdhD | -1.8 | -4.0 | succinate dehydrogenase cytochrome b556 small membrane subunit (NCBI) | compare |
| b4481 | rffT | -1.7 | -5.4 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b1257 | yciE | -1.7 | -2.0 | hypothetical protein (NCBI) | compare |
| b1889 | motB | -1.7 | -5.3 | flagellar motor protein MotB (NCBI) | conserved |
| b4202 | rpsR | -1.7 | -1.9 | 30S ribosomal protein S18 (NCBI) | compare |
| b1497 | b1497 | -1.7 | -2.8 | putative enzyme (VIMSS) | compare |
| b0949 | uup | -1.7 | -4.5 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b2894 | xerD | -1.7 | -1.6 | site-specific tyrosine recombinase XerD (NCBI) | compare |
| b0051 | ksgA | -1.7 | -4.8 | dimethyladenosine transferase (NCBI) | compare |
| b2847 | yqeI | -1.7 | -5.3 | predicted transcriptional regulator (NCBI) | compare |
| b2820 | recB | -1.7 | -3.3 | exonuclease V (RecBCD complex), beta subunit (NCBI) | compare |
| b2569 | lepA | -1.6 | -4.5 | GTP-binding protein LepA (NCBI) | compare |
| b0912 | ihfB | -1.6 | -2.4 | integration host factor subunit beta (NCBI) | compare |
| b1926 | fliT | -1.6 | -1.9 | predicted chaperone (NCBI) | compare |
| b1082 | flgK | -1.6 | -5.0 | flagellar hook-associated protein K (NCBI) | compare |
| b3261 | fis | -1.6 | -2.6 | DNA-binding protein Fis (NCBI) | compare |
| b1160 | elbA | -1.6 | -1.3 | hypothetical protein (NCBI) | compare |
| b3727 | pstC | -1.6 | -4.8 | phosphate transporter subunit (NCBI) | compare |
| b3839 | tatC | -1.6 | -5.1 | TatABCE protein translocation system subunit (NCBI) | compare |
| b3387 | dam | -1.5 | -7.1 | DNA adenine methylase (NCBI) | compare |
| b2501 | ppk | -1.5 | -6.3 | polyphosphate kinase (NCBI) | compare |
| b1252 | tonB | -1.5 | -2.6 | membrane spanning protein in TonB-ExbB-ExbD complex (NCBI) | compare |
| b1409 | ynbB | -1.5 | -4.2 | predicted CDP-diglyceride synthase (NCBI) | compare |
| b3442 | yhhZ | -1.5 | -1.8 | hypothetical protein (NCBI) | compare |
| b1924 | fliD | -1.5 | -4.0 | flagellar capping protein (NCBI) | compare |
| b1880 | flhB | -1.5 | -3.7 | flagellar biosynthesis protein B (NCBI) | conserved |
| b2282 | nuoH | -1.5 | -2.8 | NADH dehydrogenase subunit H (NCBI) | compare |
| b4253 | yjgL | -1.4 | -4.3 | orf, hypothetical protein (VIMSS) | compare |
| b2528 | iscA | -1.4 | -1.2 | iron-sulfur cluster assembly protein (NCBI) | compare |
| b0015 | dnaJ | -1.4 | -5.4 | chaperone Hsp40, co-chaperone with DnaK (NCBI) | compare |
| b4458 | oxyS | -1.4 | -0.9 | global regulatory RNA (NCBI) | compare |
| b1078 | flgG | -1.4 | -3.5 | flagellar component of cell-distal portion of basal-body rod (NCBI) | compare |
| b1048 | mdoG | -1.4 | -4.9 | glucan biosynthesis protein, periplasmic (NCBI) | compare |
| b0406 | tgt | -1.4 | -5.6 | queuine tRNA-ribosyltransferase (NCBI) | compare |
| b1121 | ycfZ | -1.4 | -4.5 | predicted inner membrane protein (NCBI) | compare |
| b0746 | valZ | -1.4 | -1.3 | tRNA-Val (NCBI) | compare |
| b1074 | flgC | -1.4 | -1.3 | flagellar basal-body rod protein C (NCBI) | compare |
| b0866 | ybjQ | -1.4 | -0.8 | hypothetical protein (NCBI) | compare |
| b4128 | yjdK | -1.4 | -2.7 | hypothetical protein (NCBI) | compare |
| b3933 | ftsN | -1.4 | -6.6 | essential cell division protein (NCBI) | compare |
| b4647 | mokA | -1.4 | -1.5 | no description | compare |
| b0627 | tatE | -1.4 | -1.8 | twin arginine translocase protein E (NCBI) | compare |
| b1879 | flhA | -1.3 | -4.5 | flagellar biosynthesis protein A (NCBI) | conserved |
| b1400 | paaY | -1.3 | -1.8 | predicted hexapeptide repeat acetyltransferase (NCBI) | compare |
| b1269 | rluB | -1.3 | -3.0 | 23S rRNA pseudouridylate synthase (NCBI) | compare |
| b1007 | b1007 | -1.3 | -1.0 | orf, hypothetical protein (VIMSS) | compare |
| b2625 | yfjI | -1.3 | -2.5 | CP4-57 prophage; predicted protein (NCBI) | compare |
| b1572 | ydfB | -1.3 | -0.9 | orf, hypothetical protein (VIMSS) | compare |
| b4590 | ybfK | -1.3 | -3.4 | hypothetical protein (RefSeq) | compare |
| b2576 | srmB | -1.3 | -2.8 | ATP-dependent RNA helicase (NCBI) | compare |
| b1607 | ydgC | -1.3 | -2.0 | conserved inner membrane protein associated with alginate biosynthesis (NCBI) | compare |
| b2476 | purC | -1.3 | -1.6 | phosphoribosylaminoimidazole-succinocarboxamidesynthase (NCBI) | compare |
| b4345 | mcrC | -1.3 | -2.6 | 5-methylcytosine-specific restriction enzyme McrBC, subunit McrC (NCBI) | compare |
| b0721 | sdhC | -1.3 | -2.6 | succinate dehydrogenase cytochrome b556 large membrane subunit (NCBI) | compare |
| b0723 | sdhA | -1.3 | -5.5 | succinate dehydrogenase flavoprotein subunit (NCBI) | compare |
| b0053 | surA | -1.3 | -3.7 | peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI) | compare |
| b0623 | cspE | -1.3 | -1.2 | cold shock protein E (NCBI) | compare |
| b2280 | nuoJ | -1.3 | -4.5 | NADH dehydrogenase subunit J (NCBI) | compare |
| b1945 | fliM | -1.3 | -3.7 | flagellar motor switch protein M (NCBI) | conserved |
| b2287 | nuoB | -1.3 | -2.7 | NADH dehydrogenase subunit B (NCBI) | compare |
| b1888 | cheA | -1.2 | -4.1 | fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein (NCBI) | compare |
| b2853 | ygeI | -1.2 | -1.8 | hypothetical protein (NCBI) | compare |
| b4557 | yidD | -1.2 | -1.6 | hypothetical protein (NCBI) | compare |
| b0018 | mokC | -1.2 | -0.6 | regulatory protein for HokC, overlaps CDS of hokC (NCBI) | compare |
| b3120 | yhaB | -1.2 | -2.8 | orf, hypothetical protein (VIMSS) | compare |
| b1080 | flgI | -1.2 | -3.3 | homolog of Salmonella P-ring of flagella basal body (VIMSS) | conserved |
| b3094 | exuR | -1.2 | -3.7 | negative regulator of exu regulon, exuT, uxaAC, and uxuB (VIMSS) | compare |
| b1049 | mdoH | -1.2 | -4.2 | glucosyltransferase MdoH (NCBI) | compare |
| b1095 | fabF | -1.2 | -3.7 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b0279 | yagM | -1.2 | -3.4 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b2291 | yfbR | -1.2 | -2.0 | hypothetical protein (NCBI) | compare |
| b0303 | ykgI | -1.2 | -1.2 | orf, hypothetical protein (VIMSS) | compare |
| b1950 | fliR | -1.2 | -3.3 | flagellar biosynthesis protein R (NCBI) | conserved |
| b3389 | aroB | -1.2 | -4.7 | 3-dehydroquinate synthase (NCBI) | compare |
| b1175 | minD | -1.2 | -3.3 | membrane ATPase of the MinC-MinD-MinE system (NCBI) | compare |
| b0247 | ykfG | -1.2 | -0.7 | CP4-6 prophage; predicted DNA repair protein (NCBI) | compare |
| b0426 | yajQ | -1.2 | -4.0 | orf, hypothetical protein (VIMSS) | compare |
| b1855 | lpxM | -1.2 | -2.7 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) | compare |
| b0082 | mraW | -1.2 | -2.8 | S-adenosyl-methyltransferase (NCBI) | compare |
| b0389 | yaiA | -1.1 | -1.5 | hypothetical protein (NCBI) | compare |
| b4139 | aspA | -1.1 | -4.7 | aspartate ammonia-lyase (aspartase) (VIMSS) | compare |
| b3863 | polA | -1.1 | -1.0 | DNA polymerase I (NCBI) | compare |
| b0585 | fes | -1.1 | -3.6 | enterobactin/ferric enterobactin esterase (NCBI) | compare |
| b0726 | sucA | -1.1 | -2.6 | alpha-ketoglutarate decarboxylase (NCBI) | compare |
| b1165 | ymgA | -1.1 | -2.7 | hypothetical protein (NCBI) | compare |
| b2218 | rcsC | -1.1 | -5.0 | hybrid sensory kinase in two-component regulatory system with RcsB and YojN (RefSeq) | conserved |
| b1084 | rne | -1.1 | -2.9 | fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein (NCBI) | compare |
| b4521 | ycgI | -1.1 | -2.3 | hypothetical protein (NCBI) | compare |
| b1334 | fnr | -1.1 | -2.0 | DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) | compare |
| b1730 | ydjO | -1.1 | -0.8 | predicted protein (RefSeq) | compare |
| b2948 | yqgE | -1.1 | -1.7 | orf, hypothetical protein (VIMSS) | compare |
| b3119 | tdcR | -1.1 | -1.4 | threonine dehydratase operon activator protein (VIMSS) | compare |
| b4699 | fnrS | -1.1 | -0.7 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b2288 | nuoA | -1.1 | -2.4 | NADH dehydrogenase I chain A (VIMSS) | compare |
| b0705 | ybfL | -1.1 | -1.2 | putative receptor protein (VIMSS) | compare |
| b0122 | yacC | -1.1 | -1.9 | orf, hypothetical protein (VIMSS) | compare |
| b2313 | cvpA | -1.1 | -2.6 | membrane protein required for colicin V production (NCBI) | compare |