Experiment set6IT071 for Pseudomonas putida KT2440

Compare to:

Sorghum Hydrolysate carbon source

200 most important genes:

  gene name fitness t score description  
PP_4909 -5.4 -7.4 phosphoserine phosphatase compare
PP_1654 -4.7 -3.3 cysteine synthase B compare
PP_0691 -4.7 -5.5 Glutamate 5-kinase compare
PP_4724 -4.5 -8.1 Carbamoyl-phosphate synthase small chain compare
PP_2371 -4.5 -7.4 Sulphite reductase hemoprotein, beta subunit compare
PP_0293 -4.3 -3.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5155 -4.3 -6.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1088 -4.3 -11.0 Argininosuccinate synthase compare
PP_4723 -3.9 -15.0 Carbamoyl-phosphate synthase large chain compare
PP_3999 -3.9 -7.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0184 -3.7 -6.7 Argininosuccinate lyase compare
PP_5104 -3.6 -10.2 thiazole synthase compare
PP_0083 -3.6 -6.0 tryptophan synthase beta chain compare
PP_4999 -3.6 -2.4 dihydroorotase-like protein compare
PP_2000 -3.6 -3.4 amidophosphoribosyl transferase compare
PP_5095 -3.5 -2.4 pyrroline-5-carboxylate reductase compare
PP_5014 -3.4 -5.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_5185 -3.4 -7.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5289 -3.3 -5.8 Acetylglutamate kinase compare
PP_0290 -3.3 -11.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0289 -3.3 -9.7 Imidazoleglycerol-phosphate dehydratase compare
PP_0735 -3.2 -3.5 molybdopterin-synthase adenylyltransferase compare
PP_4782 -3.2 -6.1 Phosphomethylpyrimidine kinase compare
PP_2328 -3.1 -8.1 Phosphoadenosine phosphosulfate reductase compare
PP_0967 -3.1 -12.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5098 -3.0 -10.4 methionine biosynthesis protein MetW compare
PP_1985 -3.0 -6.9 3-isopropylmalate dehydratase large subunit compare
PP_0966 -3.0 -12.5 Histidinol dehydrogenase compare
PP_5097 -2.9 -14.7 homoserine O-acetyltransferase compare
PP_0965 -2.9 -9.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0787 -2.8 -6.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4678 -2.8 -15.3 Ketol-acid reductoisomerase compare
PP_5015 -2.8 -5.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1233 -2.8 -5.9 sulfurtransferase compare
PP_2327 -2.7 -7.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0082 -2.7 -5.7 tryptophan synthase alpha chain compare
PP_1079 -2.7 -8.3 Ornithine carbamoyltransferase compare
PP_2001 -2.7 -12.1 O-succinylhomoserine sulfhydrylase compare
PP_0292 -2.7 -6.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1988 -2.7 -10.0 3-isopropylmalate dehydrogenase compare
PP_4890 -2.6 -7.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_4680 -2.6 -14.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1986 -2.6 -4.0 3-isopropylmalate dehydratase small subunit compare
PP_2370 -2.5 -2.2 conserved protein of unknown function compare
PP_4902 -2.5 -2.9 Oligoribonuclease compare
PP_3511 -2.4 -9.1 Branched-chain-amino-acid aminotransferase compare
PP_5128 -2.4 -8.9 Dihydroxy-acid dehydratase compare
PP_1231 -2.4 -7.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5329 -2.4 -6.5 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1468 -2.4 -3.1 Tyrosine recombinase XerD compare
PP_3505 -2.3 -4.5 conserved protein of unknown function compare
PP_4373 -2.3 -14.3 Transcriptional regulator FleQ compare
PP_4917 -2.2 -4.6 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1995 -2.1 -7.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1348 -2.0 -5.9 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0420 -2.0 -9.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0417 -2.0 -14.2 Anthranilate synthase component 1 compare
PP_4993 -2.0 -3.5 Glutathione synthetase compare
PP_5328 -1.9 -5.6 putative phosphate transport system permease protein compare
PP_0421 -1.9 -7.2 Anthranilate phosphoribosyltransferase compare
PP_4679 -1.9 -6.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0422 -1.9 -4.1 Indole-3-glycerol phosphate synthase compare
PP_0291 -1.9 -2.9 conserved protein of unknown function compare
PP_0166 -1.7 -12.9 HlyD family secretion protein compare
PP_0167 -1.7 -13.4 Toxin secretion ATP-binding protein compare
PP_4874 -1.7 -1.1 50S ribosomal protein L9 compare
PP_5327 -1.7 -6.2 putative phosphate ABC transporter, permease subunit compare
PP_4342 -1.7 -3.6 flagellar synthesis regulator, putative ATPase compare
PP_0672 -1.6 -9.7 Sensory box protein compare
PP_1428 -1.6 -2.3 Sigma factor AlgU negative regulatory protein compare
PP_0168 -1.6 -12.8 putative surface adhesion protein compare
PP_2929 -1.6 -7.7 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_0165 -1.5 -10.4 GGDEF domain protein compare
PP_3506 -1.5 -5.5 Magnesium chelatase, subunit ChII compare
PP_1025 -1.5 -8.1 2-isopropylmalate synthase compare
PP_4271 -1.4 -1.6 conserved protein of unknown function compare
PP_4829 -1.4 -3.8 putative precorrin-3B synthase compare
PP_5350 -1.4 -2.8 Transcriptional regulator, RpiR family compare
PP_1216 -1.4 -1.8 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4519 -1.4 -9.0 Agglutination protein compare
PP_2928 -1.3 -7.2 Saccharopine dehydrogenase compare
PP_1237 -1.3 -2.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1763 -1.3 -3.3 putative oxidoreductase compare
PP_4722 -1.3 -3.8 Transcription elongation factor GreA compare
PP_5230 -1.3 -2.7 Tyrosine recombinase XerC compare
PP_5331 -1.3 -5.5 Long-chain acyl-CoA thioester hydrolase compare
PP_0888 -1.3 -2.1 Photosynthetic apparatus regulatory protein RegA compare
PP_0393 -1.2 -0.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1824 -1.2 -2.4 Smr domain protein compare
PP_1672 -1.2 -5.2 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_4546 -1.2 -2.8 ATP-dependent helicase HrpA compare
PP_0339 -1.2 -4.6 Pyruvate dehydrogenase E1 component compare
PP_5054 -1.2 -1.5 glutaredoxin 3 compare
PP_4004 -1.2 -2.9 DNA translocase FtsK compare
PP_1994 -1.2 -2.1 tRNA pseudouridine (38-40)synthase compare
PP_0512 -1.2 -3.1 hypothetical protein compare
PP_3649 -1.1 -3.7 Transcriptional regulator, GntR family compare
PP_3378 -1.1 -2.5 putative 2-ketogluconokinase compare
PP_4120 -1.1 -2.6 NADH-quinone oxidoreductase subunit B compare
PP_4904 -1.1 -5.4 Flagellar motor rotation protein compare
PP_3508 -1.1 -2.3 Protein CobW compare
PP_1198 -1.1 -2.8 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_2152 -1.0 -2.9 glycerophosphoryl diester phosphodiesterase compare
PP_5303 -1.0 -4.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5217 -1.0 -8.8 Polyphosphate kinase compare
PP_4726 -1.0 -2.5 Chaperone protein DnaJ compare
PP_4122 -1.0 -1.3 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4126 -1.0 -2.0 NADH-quinone oxidoreductase subunit I compare
PP_4696 -1.0 -2.8 Nitrogen regulation protein NR(I) compare
PP_5000 -1.0 -1.3 peptidase component of the ATP-dependent HslVU protease compare
PP_4228 -1.0 -4.0 conserved protein of unknown function compare
PP_3105 -1.0 -1.9 conserved membrane protein of unknown function compare
PP_t10 -1.0 -2.7 tRNA-Pro compare
PP_2372 -0.9 -5.9 putative Periplasmic sugar-binding protein compare
PP_2160 -0.9 -2.6 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_4268 -0.9 -1.3 nucleoid-associated broad specificity regulator compare
PP_3052 -0.9 -1.5 conserved protein of unknown function compare
PP_1734 -0.9 -1.9 Probable septum site-determining protein MinC compare
PP_1344 -0.9 -1.6 conserved protein of unknown function compare
PP_2336 -0.9 -2.4 aconitate hydratase 1 compare
PP_1677 -0.9 -3.5 Adenosyl-cobyric acid synthase compare
PP_3761 -0.9 -7.1 Sensor histidine kinase/response regulator compare
PP_2144 -0.9 -2.9 Transcriptional regulator, TetR family compare
PP_4355 -0.9 -2.0 flagellar export apparatus subunit compare
PP_5508 -0.9 -1.4 conserved protein of unknown function compare
PP_1673 -0.9 -4.5 cobyrinate a,c-diamide synthase compare
PP_2029 -0.9 -2.1 von Willebrand factor type A domain protein compare
PP_5094 -0.9 -2.7 putative enzyme with PLP binding domain compare
PP_2903 -0.8 -2.0 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_5429 -0.8 -3.5 protein of unknown function compare
PP_3474 -0.8 -3.0 putative Curli fiber protein CsgE compare
PP_5198 -0.8 -2.3 conserved protein of unknown function compare
PP_3946 -0.8 -0.7 HTH-type transcriptional repressor NicR compare
PP_2222 -0.8 -3.4 conserved protein of unknown function compare
PP_5654 -0.8 -2.3 putative phosphotriesterase compare
PP_1664 -0.8 -3.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_1912 -0.8 -3.0 Phosphate acyltransferase compare
PP_4375 -0.8 -5.2 flagellar chaperone, inhibits premature FliC assembly compare
PP_1876 -0.8 -2.5 putative ATP/GTP-binding protein of the AAA+ family compare
PP_0804 -0.8 -4.2 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_3507 -0.8 -5.1 Aerobic cobaltochelatase subunit CobN compare
PP_4922 -0.7 -4.9 Phosphomethylpyrimidine synthase compare
PP_5499 -0.7 -2.6 conserved protein of unknown function compare
PP_5227 -0.7 -3.5 diaminopimelate decarboxylase compare
PP_1164 -0.7 -1.3 Transcriptional regulator, LysR family compare
PP_2127 -0.7 -2.3 Sensor histidine kinase compare
PP_1675 -0.7 -4.4 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_2572 -0.7 -3.0 conserved protein of unknown function compare
PP_1111 -0.7 -4.5 putative Synthetase compare
PP_4353 -0.7 -3.6 Flagellar biosynthetic protein fliR compare
PP_4379 -0.7 -3.1 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4832 -0.7 -2.9 Precorrin-6x reductase compare
PP_5084 -0.7 -4.2 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_3903 -0.7 -1.1 conserved protein of unknown function compare
PP_4827 -0.7 -5.0 Precorrin-2 C(20)-methyltransferase compare
PP_4370 -0.7 -3.2 Flagellar hook-basal body complex protein FliE compare
PP_5352 -0.7 -4.5 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_t11 -0.7 -1.5 tRNA-Lys compare
PP_4830 -0.7 -3.6 precorrin-6Y C(5,15)-methyltransferase compare
PP_1676 -0.7 -3.4 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_2889 -0.7 -2.9 putative Transmembrane regulator PrtR compare
PP_4336 -0.7 -2.6 flagellar motor rotation protein compare
PP_4254 -0.7 -1.0 conserved protein of unknown function compare
PP_4997 -0.7 -1.7 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_1678 -0.7 -1.8 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_1410 -0.7 -1.5 conserved protein of unknown function compare
PP_5644 -0.7 -1.6 conserved membrane protein of unknown function compare
PP_4343 -0.7 -3.2 Flagellar biosynthesis protein FlhF compare
PP_4937 -0.7 -2.1 toluene tolerance protein compare
PP_4482 -0.7 -2.2 Transcriptional regulator, AraC family compare
PP_5597 -0.7 -2.9 conserved protein of unknown function compare
PP_0254 -0.7 -2.4 conserved protein of unknown function compare
PP_4880 -0.7 -3.8 exoribonuclease R compare
PP_4262 -0.7 -1.3 Cytochrome oxidase maturation protein, cbb3-type compare
PP_4265 -0.7 -2.3 DNA-binding transcriptional dual regulator compare
PP_4905 -0.7 -4.1 Flagellar motor rotation protein compare
PP_2379 -0.6 -2.9 putative cytochrome oxidase biogenesis protein compare
PP_1319 -0.6 -3.8 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_2378 -0.6 -1.4 Fe/S biogenesis protein NfuA compare
PP_0852 -0.6 -1.5 Transcriptional regulator, Cro/CI family compare
PP_1110 -0.6 -2.3 serine acetyltransferase compare
PP_2402 -0.6 -1.4 putative Sensor histidine kinase compare
PP_0949 -0.6 -2.6 putative ATP-binding protein UPF0042 compare
PP_2174 -0.6 -2.8 conserved protein of unknown function compare
PP_4826 -0.6 -3.2 Precorrin-3B C17-methyltransferase compare
PP_2356 -0.6 -4.4 putative Phytochrome family protein compare
PP_2345 -0.6 -1.7 conserved exported protein of unknown function compare
PP_4875 -0.6 -2.5 conserved membrane protein of unknown function compare
PP_2433 -0.6 -1.0 conserved protein of unknown function compare
PP_4121 -0.6 -2.3 NADH-quinone oxidoreductase subunit C/D compare
PP_4073 -0.6 -1.8 conserved exported protein of unknown function compare
PP_4721 -0.6 -3.2 conserved membrane protein of unknown function compare
PP_0803 -0.6 -3.7 Protein secretion ABC efflux system, membrane fusion protein compare
PP_2189 -0.6 -1.7 conserved protein of unknown function compare
PP_4517 -0.6 -1.1 conserved protein of unknown function compare
PP_0627 -0.6 -2.1 conserved protein of unknown function compare
PP_0760 -0.6 -2.4 conserved membrane protein of unknown function compare
PP_2497 -0.6 -1.5 conserved protein of unknown function compare
PP_0213 -0.6 -2.9 succinate-semialdehyde dehydrogenase (NADP+) compare
PP_4301 -0.6 -2.0 Pyruvate kinase compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Sorghum Hydrolysate in Pseudomonas putida KT2440

For carbon source Sorghum Hydrolysate across organisms