Experiment set6IT070 for Pseudomonas putida KT2440

Compare to:

Sorghum Hydrolysate carbon source

200 most important genes:

  gene name fitness t score description  
PP_4909 -5.4 -6.4 phosphoserine phosphatase compare
PP_2371 -5.1 -4.9 Sulphite reductase hemoprotein, beta subunit compare
PP_0691 -4.8 -4.7 Glutamate 5-kinase compare
PP_5155 -4.8 -6.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2370 -4.3 -4.9 conserved protein of unknown function compare
PP_0292 -4.3 -5.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0293 -4.2 -5.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4723 -3.9 -14.5 Carbamoyl-phosphate synthase large chain compare
PP_1654 -3.8 -4.5 cysteine synthase B compare
PP_4724 -3.8 -8.4 Carbamoyl-phosphate synthase small chain compare
PP_1088 -3.7 -10.9 Argininosuccinate synthase compare
PP_0967 -3.5 -12.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4999 -3.5 -2.4 dihydroorotase-like protein compare
PP_3999 -3.5 -8.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0966 -3.4 -12.6 Histidinol dehydrogenase compare
PP_5014 -3.4 -5.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_0184 -3.4 -6.1 Argininosuccinate lyase compare
PP_5289 -3.4 -6.1 Acetylglutamate kinase compare
PP_2000 -3.2 -3.8 amidophosphoribosyl transferase compare
PP_0290 -3.2 -9.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0289 -3.2 -9.0 Imidazoleglycerol-phosphate dehydratase compare
PP_1237 -3.1 -3.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4890 -3.1 -7.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_2328 -3.1 -7.2 Phosphoadenosine phosphosulfate reductase compare
PP_0083 -3.1 -6.4 tryptophan synthase beta chain compare
PP_0082 -3.0 -5.3 tryptophan synthase alpha chain compare
PP_0965 -3.0 -11.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4782 -2.7 -5.9 Phosphomethylpyrimidine kinase compare
PP_3511 -2.7 -10.0 Branched-chain-amino-acid aminotransferase compare
PP_1988 -2.6 -9.7 3-isopropylmalate dehydrogenase compare
PP_0735 -2.6 -2.9 molybdopterin-synthase adenylyltransferase compare
PP_4678 -2.6 -15.3 Ketol-acid reductoisomerase compare
PP_5128 -2.6 -10.3 Dihydroxy-acid dehydratase compare
PP_1428 -2.5 -2.4 Sigma factor AlgU negative regulatory protein compare
PP_2001 -2.5 -10.3 O-succinylhomoserine sulfhydrylase compare
PP_1985 -2.5 -7.0 3-isopropylmalate dehydratase large subunit compare
PP_5303 -2.4 -6.4 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5097 -2.4 -12.8 homoserine O-acetyltransferase compare
PP_1995 -2.4 -9.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1233 -2.4 -7.3 sulfurtransferase compare
PP_5104 -2.4 -8.3 thiazole synthase compare
PP_1468 -2.3 -3.4 Tyrosine recombinase XerD compare
PP_5185 -2.3 -6.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5098 -2.2 -8.3 methionine biosynthesis protein MetW compare
PP_4680 -2.2 -12.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5015 -2.2 -3.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5095 -2.2 -2.1 pyrroline-5-carboxylate reductase compare
PP_1079 -2.1 -6.5 Ornithine carbamoyltransferase compare
PP_1986 -2.0 -4.4 3-isopropylmalate dehydratase small subunit compare
PP_1734 -2.0 -1.9 Probable septum site-determining protein MinC compare
PP_4679 -1.9 -6.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0421 -1.9 -6.7 Anthranilate phosphoribosyltransferase compare
PP_0787 -1.9 -4.6 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4126 -1.8 -2.7 NADH-quinone oxidoreductase subunit I compare
PP_0291 -1.8 -2.6 conserved protein of unknown function compare
PP_0417 -1.8 -12.4 Anthranilate synthase component 1 compare
PP_4917 -1.7 -3.8 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1348 -1.7 -6.5 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_2378 -1.6 -2.8 Fe/S biogenesis protein NfuA compare
PP_0420 -1.6 -9.4 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4004 -1.6 -3.3 DNA translocase FtsK compare
PP_5327 -1.6 -6.4 putative phosphate ABC transporter, permease subunit compare
PP_0888 -1.6 -2.3 Photosynthetic apparatus regulatory protein RegA compare
PP_4874 -1.6 -1.0 50S ribosomal protein L9 compare
PP_1231 -1.6 -5.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0422 -1.6 -4.4 Indole-3-glycerol phosphate synthase compare
PP_4799 -1.6 -2.7 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2442 -1.5 -2.9 conserved protein of unknown function, DUF480 family compare
PP_4828 -1.5 -1.2 Precorrin-8X methylmutase compare
PP_4373 -1.5 -9.5 Transcriptional regulator FleQ compare
PP_5230 -1.4 -2.8 Tyrosine recombinase XerC compare
PP_0846 -1.4 -1.1 DnaK-like molecular chaperone specific for IscU compare
PP_5329 -1.4 -3.9 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0319 -1.4 -2.6 conserved protein of unknown function compare
PP_4120 -1.4 -3.2 NADH-quinone oxidoreductase subunit B compare
PP_1025 -1.3 -7.6 2-isopropylmalate synthase compare
PP_5000 -1.3 -1.7 peptidase component of the ATP-dependent HslVU protease compare
PP_2929 -1.3 -6.9 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_4342 -1.3 -3.0 flagellar synthesis regulator, putative ATPase compare
PP_4519 -1.3 -9.6 Agglutination protein compare
PP_2327 -1.3 -3.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4546 -1.3 -2.7 ATP-dependent helicase HrpA compare
PP_0168 -1.3 -11.1 putative surface adhesion protein compare
PP_2029 -1.3 -1.8 von Willebrand factor type A domain protein compare
PP_1629 -1.3 -4.1 Protein RecA compare
PP_3506 -1.3 -3.3 Magnesium chelatase, subunit ChII compare
PP_1293 -1.2 -2.2 molybdopterin synthase small subunit compare
PP_1994 -1.2 -2.0 tRNA pseudouridine (38-40)synthase compare
PP_0165 -1.2 -8.8 GGDEF domain protein compare
PP_0167 -1.2 -9.1 Toxin secretion ATP-binding protein compare
PP_3508 -1.2 -3.4 Protein CobW compare
PP_5328 -1.2 -3.2 putative phosphate transport system permease protein compare
PP_2031 -1.2 -2.1 conserved protein of unknown function compare
PP_5331 -1.2 -4.7 Long-chain acyl-CoA thioester hydrolase compare
PP_2379 -1.1 -4.2 putative cytochrome oxidase biogenesis protein compare
PP_0166 -1.1 -8.6 HlyD family secretion protein compare
PP_2433 -1.1 -1.5 conserved protein of unknown function compare
PP_t12 -1.0 -1.1 tRNA-Thr compare
PP_4343 -1.0 -4.3 Flagellar biosynthesis protein FlhF compare
PP_4993 -1.0 -2.3 Glutathione synthetase compare
PP_0672 -1.0 -7.5 Sensory box protein compare
PP_1673 -1.0 -4.3 cobyrinate a,c-diamide synthase compare
PP_0393 -1.0 -0.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2928 -1.0 -5.3 Saccharopine dehydrogenase compare
PP_0164 -1.0 -4.1 conserved protein of unknown function compare
PP_1142 -1.0 -1.4 conserved protein of unknown function compare
PP_4355 -0.9 -2.8 flagellar export apparatus subunit compare
PP_3761 -0.9 -7.0 Sensor histidine kinase/response regulator compare
PP_1677 -0.9 -3.3 Adenosyl-cobyric acid synthase compare
PP_5604 -0.9 -1.1 putative subtilisin-like serine protease compare
PP_4722 -0.9 -2.7 Transcription elongation factor GreA compare
PP_1198 -0.9 -2.4 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1675 -0.9 -5.8 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_4273 -0.9 -1.6 Transcriptional regulator, MerR family compare
PP_3649 -0.9 -2.7 Transcriptional regulator, GntR family compare
PP_1366 -0.9 -0.9 Transcriptional regulator MvaT, P16 subunit compare
PP_3926 -0.9 -1.6 short-chain dehydrogenase compare
PP_5429 -0.9 -2.7 protein of unknown function compare
PP_4696 -0.9 -2.4 Nitrogen regulation protein NR(I) compare
PP_4701 -0.9 -1.1 glucose-6-phosphate isomerase compare
PP_4826 -0.9 -4.1 Precorrin-3B C17-methyltransferase compare
PP_2417 -0.9 -2.9 putative Iron ABC transporter, permease protein compare
PP_2341 -0.9 -1.9 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_4726 -0.9 -2.1 Chaperone protein DnaJ compare
PP_3808 -0.8 -1.6 Antibiotic synthesis protein MbtH compare
PP_4827 -0.8 -5.3 Precorrin-2 C(20)-methyltransferase compare
PP_3902 -0.8 -2.5 conserved protein of unknown function compare
PP_5217 -0.8 -6.7 Polyphosphate kinase compare
PP_4905 -0.8 -4.2 Flagellar motor rotation protein compare
PP_2160 -0.8 -2.3 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_5028 -0.8 -1.8 proline iminopeptidase compare
PP_4829 -0.8 -2.1 putative precorrin-3B synthase compare
PP_3507 -0.8 -5.8 Aerobic cobaltochelatase subunit CobN compare
PP_4879 -0.8 -2.8 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_1763 -0.8 -1.7 putative oxidoreductase compare
PP_2640 -0.8 -1.7 Acetyltransferase, GNAT family compare
PP_2030 -0.8 -2.6 conserved protein of unknown function compare
PP_5456 -0.8 -1.0 conserved protein of unknown function compare
PP_4367 -0.8 -3.4 Flagellar assembly protein FliH compare
PP_4895 -0.7 -1.6 tRNA dimethylallyltransferase compare
PP_0001 -0.7 -0.9 probable chromosome-partitioning protein compare
PP_4337 -0.7 -3.9 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_1681 -0.7 -5.0 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_4262 -0.7 -2.0 Cytochrome oxidase maturation protein, cbb3-type compare
PP_5714 -0.7 -2.4 conserved protein of unknown function compare
PP_4793 -0.7 -1.1 conserved protein of unknown function compare
PP_5227 -0.7 -3.3 diaminopimelate decarboxylase compare
PP_2177 -0.7 -2.9 putative transcriptional regulator compare
PP_4379 -0.7 -3.4 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1679 -0.7 -1.2 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_2322 -0.7 -4.5 Major outer membrane lipoprotein compare
PP_5279 -0.7 -1.3 conserved protein of unknown function compare
PP_4124 -0.7 -2.0 NADH-quinone oxidoreductase subunit G compare
PP_2060 -0.7 -1.2 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_4943 -0.7 -0.8 putative Glycosyl transferase compare
PP_3762 -0.7 -1.8 Response regulator compare
PP_1876 -0.7 -2.3 putative ATP/GTP-binding protein of the AAA+ family compare
PP_4937 -0.7 -2.3 toluene tolerance protein compare
PP_1304 -0.6 -4.4 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4098 -0.6 -1.2 UvrABC system protein C compare
PP_2633 -0.6 -1.0 conserved protein of unknown function compare
PP_2646 -0.6 -1.7 conserved protein of unknown function compare
PP_2511 -0.6 -1.9 conserved protein of unknown function compare
PP_4361 -0.6 -3.5 Flagellar hook-length control protein FliK compare
PP_3603 -0.6 -3.0 Transcriptional regulator, GntR family compare
PP_4365 -0.6 -2.9 Flagellar protein FliJ compare
PP_4848 -0.6 -1.8 Curved DNA-binding protein compare
PP_4531 -0.6 -2.4 conserved exported protein of unknown function compare
PP_2747 -0.6 -1.1 conserved protein of unknown function compare
PP_1999 -0.6 -1.2 membrane protein required for colicin V production compare
PP_4994 -0.6 -3.2 conserved protein of unknown function compare
PP_3105 -0.6 -1.6 conserved membrane protein of unknown function compare
PP_5209 -0.6 -2.6 conserved exported protein of unknown function compare
PP_4904 -0.6 -3.2 Flagellar motor rotation protein compare
PP_5094 -0.6 -2.5 putative enzyme with PLP binding domain compare
PP_3938 -0.6 -1.7 conserved protein of unknown function compare
PP_0339 -0.6 -2.6 Pyruvate dehydrogenase E1 component compare
PP_5339 -0.6 -2.0 transcriptional regulator, ornithine utilization compare
PP_4122 -0.6 -1.0 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4308 -0.6 -2.5 Transcriptional regulator, AsnC family compare
PP_4381 -0.6 -4.2 Flagellar hook-associated protein FlgK compare
PP_5100 -0.6 -1.1 dITP/XTP pyrophosphatase compare
PP_2842 -0.6 -3.0 urease accessory protein compare
PP_2922 -0.6 -2.1 Urea amidolyase-related protein compare
PP_t13 -0.6 -1.6 tRNA-Lys compare
PP_2150 -0.6 -2.8 putative Thiamine biosynthesis lipoprotein compare
PP_0108 -0.6 -2.6 conserved protein of unknown function compare
PP_2889 -0.6 -1.6 putative Transmembrane regulator PrtR compare
PP_2700 -0.6 -1.7 AhpC/TSA family protein compare
PP_2375 -0.6 -4.6 cobalamin-dependent methionine synthase compare
PP_4366 -0.6 -4.1 flagellum-specific ATP synthase compare
PP_4944 -0.6 -2.5 Carbamoyltransferase compare
PP_4830 -0.6 -2.8 precorrin-6Y C(5,15)-methyltransferase compare
PP_1303 -0.6 -3.3 Sulfate adenylyltransferase subunit 2 compare
PP_2372 -0.6 -3.8 putative Periplasmic sugar-binding protein compare
PP_1110 -0.6 -1.8 serine acetyltransferase compare
PP_1713 -0.6 -1.6 Transcriptional regulator PcaQ compare
PP_4247 -0.6 -1.3 Exonuclease compare
PP_4959 -0.6 -4.3 diguanylate cyclase compare
PP_2748 -0.5 -1.8 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in carbon source experiments

For carbon source Sorghum Hydrolysate across organisms