Experiment set6IT068 for Pseudomonas putida KT2440

Compare to:

Lignin Monomers carbon source

200 most important genes:

  gene name fitness t score description  
PP_0691 -4.9 -3.4 Glutamate 5-kinase compare
PP_4724 -4.5 -6.1 Carbamoyl-phosphate synthase small chain compare
PP_4723 -4.4 -11.4 Carbamoyl-phosphate synthase large chain compare
PP_1468 -3.7 -3.6 Tyrosine recombinase XerD compare
PP_1654 -3.6 -4.2 cysteine synthase B compare
PP_2371 -3.5 -6.7 Sulphite reductase hemoprotein, beta subunit compare
PP_3999 -3.1 -7.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0164 -3.1 -8.9 conserved protein of unknown function compare
PP_5217 -3.0 -17.7 Polyphosphate kinase compare
PP_2328 -3.0 -6.5 Phosphoadenosine phosphosulfate reductase compare
PP_4999 -2.9 -2.0 dihydroorotase-like protein compare
PP_0834 -2.8 -2.4 Sec translocation complex subunit YajC compare
PP_4909 -2.7 -7.1 phosphoserine phosphatase compare
PP_0184 -2.7 -5.9 Argininosuccinate lyase compare
PP_4126 -2.7 -2.6 NADH-quinone oxidoreductase subunit I compare
PP_0593 -2.6 -1.6 putative ribosome-binding factor compare
PP_5155 -2.3 -5.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2370 -2.3 -4.5 conserved protein of unknown function compare
PP_1689 -2.3 -12.0 putative Long-chain fatty acid transporter compare
PP_0927 -2.1 -12.2 aromatic amino acid transport protein compare
PP_5014 -2.1 -3.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_4364 -2.1 -5.1 putative Anti-sigma F factor antagonist compare
PP_2433 -2.1 -2.7 conserved protein of unknown function compare
PP_0123 -2.0 -3.6 DNA polymerase I, 5 compare
PP_2302 -1.9 -3.3 DNA-binding, ATP-dependent protease compare
PP_1763 -1.9 -3.3 putative oxidoreductase compare
PP_2144 -1.8 -3.6 Transcriptional regulator, TetR family compare
PP_5230 -1.8 -2.5 Tyrosine recombinase XerC compare
PP_0957 -1.8 -2.4 D-arabinose 5-phosphate isomerase compare
PP_4779 -1.8 -11.9 AMP nucleosidase compare
PP_1629 -1.8 -4.1 Protein RecA compare
PP_1088 -1.7 -7.9 Argininosuccinate synthase compare
PP_1079 -1.7 -6.2 Ornithine carbamoyltransferase compare
PP_4890 -1.7 -4.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_0319 -1.7 -2.5 conserved protein of unknown function compare
PP_1986 -1.6 -2.9 3-isopropylmalate dehydratase small subunit compare
PP_5185 -1.6 -4.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_3248 -1.6 -1.5 Dyp-type peroxidase family protein compare
PP_1233 -1.6 -4.7 sulfurtransferase compare
PP_1515 -1.5 -4.7 Transcriptional regulator, tetR family compare
PP_1215 -1.5 -1.0 Crossover junction endodeoxyribonuclease RuvC compare
PP_0966 -1.5 -7.4 Histidinol dehydrogenase compare
PP_0364 -1.4 -6.9 pimeloyl-[acp] methyl ester esterase compare
PP_1994 -1.4 -1.6 tRNA pseudouridine (38-40)synthase compare
PP_0965 -1.4 -8.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4247 -1.4 -2.1 Exonuclease compare
PP_0967 -1.3 -7.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0735 -1.3 -1.4 molybdopterin-synthase adenylyltransferase compare
PP_1664 -1.3 -4.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_1985 -1.3 -4.0 3-isopropylmalate dehydratase large subunit compare
PP_4004 -1.3 -2.6 DNA translocase FtsK compare
PP_0122 -1.2 -1.7 conserved exported protein of unknown function compare
PP_4984 -1.2 -5.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0366 -1.2 -5.6 dethiobiotin synthetase compare
PP_2336 -1.2 -2.1 aconitate hydratase 1 compare
PP_0362 -1.2 -7.3 Biotin synthase compare
PP_4277 -1.2 -5.9 Transcriptional regulator, GntR family compare
PP_1142 -1.2 -1.3 conserved protein of unknown function compare
PP_1214 -1.2 -2.3 putative transcriptional regulatory protein compare
PP_4471 -1.2 -3.8 Magnesium transporter compare
PP_1493 -1.2 -3.0 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2217 -1.2 -2.3 enoyl-CoA hydratase compare
PP_5104 -1.2 -6.3 thiazole synthase compare
PP_5128 -1.2 -5.7 Dihydroxy-acid dehydratase compare
PP_5439 -1.1 -3.2 conserved protein of unknown function compare
PP_5283 -1.1 -5.3 periplasmic dipeptide transport protein compare
PP_1377 -1.1 -4.3 beta-ketoadipyl-CoA thiolase compare
PP_4546 -1.1 -1.8 ATP-dependent helicase HrpA compare
PP_5453 -1.1 -1.8 conserved protein of unknown function compare
PP_2379 -1.1 -3.6 putative cytochrome oxidase biogenesis protein compare
PP_4720 -1.1 -1.8 putative RNA binding protein compare
PP_0435 -1.1 -7.9 Peptidase, M23/M37 family compare
PP_5331 -1.1 -3.8 Long-chain acyl-CoA thioester hydrolase compare
PP_5289 -1.1 -2.3 Acetylglutamate kinase compare
PP_4268 -1.1 -1.3 nucleoid-associated broad specificity regulator compare
PP_4782 -1.1 -3.6 Phosphomethylpyrimidine kinase compare
PP_5241 -1.1 -2.5 DNA-binding response regulator, LuxR family compare
PP_4679 -1.1 -4.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1713 -1.1 -1.5 Transcriptional regulator PcaQ compare
PP_4067 -1.1 -5.7 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_0345 -1.1 -3.4 putative Heptose kinase WapP compare
PP_0048 -1.1 -1.3 conserved protein of unknown function compare
PP_1099 -1.1 -2.5 Cold shock protein CapB compare
PP_3511 -1.1 -4.7 Branched-chain-amino-acid aminotransferase compare
PP_2000 -1.1 -2.2 amidophosphoribosyl transferase compare
PP_3952 -1.1 -4.9 3-oxoadipate CoA-transferase subunit A compare
PP_2388 -1.1 -2.3 Transporter, LysE family compare
PP_3392 -1.0 -1.3 conserved protein of unknown function compare
PP_0685 -1.0 -1.8 conserved protein of unknown function compare
PP_4874 -1.0 -0.7 50S ribosomal protein L9 compare
PP_1589 -1.0 -5.2 uridylyltransferase compare
PP_4803 -1.0 -6.4 D-alanyl-D-alanine carboxypeptidase compare
PP_0313 -1.0 -2.4 putative electron transfer flavoprotein beta subunit compare
PP_2214 -1.0 -2.8 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_3110 -1.0 -1.7 protein of unknown function compare
PP_5015 -1.0 -2.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_3946 -1.0 -0.9 HTH-type transcriptional repressor NicR compare
PP_2903 -1.0 -2.1 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_1303 -1.0 -4.7 Sulfate adenylyltransferase subunit 2 compare
PP_0082 -1.0 -2.7 tryptophan synthase alpha chain compare
PP_5445 -1.0 -2.1 conserved protein of unknown function compare
PP_1216 -1.0 -1.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0365 -1.0 -6.1 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0401 -1.0 -1.8 Ribosomal RNA small subunit methyltransferase A compare
PP_4980 -1.0 -3.4 ATP-dependent RNA helicase compare
PP_1379 -1.0 -4.7 3-carboxy-cis,cis-muconate cycloisomerase compare
PP_4121 -1.0 -2.8 NADH-quinone oxidoreductase subunit C/D compare
PP_4481 -1.0 -4.1 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_1988 -1.0 -5.0 3-isopropylmalate dehydrogenase compare
PP_3357 -0.9 -3.4 p-hydroxybenzaldehyde dehydrogenase vdh (EC 1.2.1.64) (from data) compare
PP_2864 -0.9 -1.9 conserved protein of unknown function compare
PP_4480 -0.9 -4.7 arginine N-succinyltransferase, subunit alpha compare
PP_1380 -0.9 -3.3 3-oxoadipate enol-lactonase 2 compare
PP_2622 -0.9 -2.4 conserved protein of unknown function compare
PP_1111 -0.9 -4.5 putative Synthetase compare
PP_1326 -0.9 -2.4 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_4678 -0.9 -5.8 Ketol-acid reductoisomerase compare
PP_2880 -0.9 -1.5 Transcriptional regulator, TetR family compare
PP_4993 -0.9 -1.8 Glutathione synthetase compare
PP_5552 -0.9 -1.4 conserved protein of unknown function compare
PP_2748 -0.9 -1.6 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_5095 -0.9 -1.0 pyrroline-5-carboxylate reductase compare
PP_1348 -0.9 -3.8 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_3929 -0.9 -3.1 conserved protein of unknown function compare
PP_4207 -0.9 -2.3 conserved protein of unknown function compare
PP_2442 -0.9 -2.1 conserved protein of unknown function, DUF480 family compare
PP_5640 -0.9 -2.9 conserved protein of unknown function compare
PP_1190 -0.9 -2.8 conserved protein of unknown function compare
PP_0363 -0.8 -5.2 8-amino-7-oxononanoate synthase compare
PP_3951 -0.8 -3.3 3-oxoadipate CoA-transferase subunit A compare
PP_1026 -0.8 -1.8 Peptidase, M23/M37 family compare
PP_1554 -0.8 -1.3 conserved protein of unknown function compare
PP_2462 -0.8 -2.2 conserved protein of unknown function compare
PP_0801 -0.8 -1.2 conserved exported protein of unknown function compare
PP_0509 -0.8 -2.0 conserved protein of unknown function compare
PP_2145 -0.8 -3.7 beta-N-acetylglucosaminidase compare
PP_3318 -0.8 -1.8 conserved protein of unknown function compare
PP_4680 -0.8 -5.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1138 -0.8 -1.8 branched chain amino acid transporter - ATP binding subunit compare
PP_4584 -0.8 -2.2 putative endonuclease compare
PP_4532 -0.8 -1.5 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_2122 -0.8 -2.7 molybdenum cofactor biosynthesis protein B compare
PP_2003 -0.8 -2.4 conserved protein of unknown function compare
PP_4545 -0.8 -2.6 beta-ketodecanoyl-(Acyl-carrier-protein) synthase compare
PP_0440 -0.8 -2.0 Elongation factor Tu-A compare
PP_4811 -0.8 -2.7 Gamma-glutamyl phosphate reductase compare
PP_1025 -0.8 -5.2 2-isopropylmalate synthase compare
PP_1739 -0.8 -2.3 conserved membrane protein of unknown function compare
PP_0218 -0.8 -4.3 Sensory box protein compare
PP_3541 -0.8 -0.9 Transporter, MgtC family compare
PP_3649 -0.8 -2.0 Transcriptional regulator, GntR family compare
PP_5007 -0.8 -1.4 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_4159 -0.8 -2.1 Potassium-transporting ATPase C chain compare
PP_4124 -0.7 -1.8 NADH-quinone oxidoreductase subunit G compare
PP_5055 -0.7 -1.5 Sulfurtransferase compare
PP_5028 -0.7 -1.5 proline iminopeptidase compare
PP_2390 -0.7 -4.2 Transcriptional regulator, LysR family compare
PP_5582 -0.7 -1.1 conserved protein of unknown function compare
PP_5588 -0.7 -2.2 conserved protein of unknown function compare
PP_4328 -0.7 -2.6 conserved protein of unknown function compare
PP_5198 -0.7 -1.7 conserved protein of unknown function compare
PP_5000 -0.7 -1.0 peptidase component of the ATP-dependent HslVU protease compare
PP_0434 -0.7 -3.9 Anhydro-N-acetylmuramic acid kinase compare
PP_5218 -0.7 -3.1 DedA family protein compare
PP_3407 -0.7 -2.4 conserved protein of unknown function compare
PP_1669 -0.7 -3.4 NLP/P60 family protein compare
PP_5583 -0.7 -0.9 conserved protein of unknown function compare
PP_0025 -0.7 -1.0 hypothetical protein compare
PP_0848 -0.7 -1.3 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_4696 -0.7 -1.7 Nitrogen regulation protein NR(I) compare
PP_1055 -0.7 -1.0 Type II secretion pathway protein GspN compare
PP_4893 -0.7 -4.5 GTPase HflX compare
PP_1304 -0.7 -3.7 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1110 -0.7 -1.6 serine acetyltransferase compare
PP_0481 -0.7 -4.2 Catalase compare
PP_4495 -0.7 -4.9 aromatic amino acid transport protein compare
PP_4833 -0.7 -2.5 SURF1 domain protein compare
PP_0346 -0.7 -4.4 putative Heptose kinase WapQ compare
PP_4937 -0.7 -1.9 toluene tolerance protein compare
PP_4305 -0.7 -4.4 sulfate ABC transporter compare
PP_0195 -0.7 -1.5 conserved protein of unknown function compare
PP_0694 -0.7 -1.8 conserved protein of unknown function compare
PP_0839 -0.7 -1.5 tRNA Cm32/Um32 methyltransferase compare
PP_0141 -0.6 -2.0 putative ABC transporter, ATP-binding protein compare
PP_4575 -0.6 -2.6 Urea amidolyase-related protein compare
PP_4261 -0.6 -2.9 cation-transporting P-type ATPase compare
PP_0120 -0.6 -2.7 putative zinc ABC transporter compare
PP_5176 -0.6 -2.1 conserved protein of unknown function compare
PP_3105 -0.6 -1.5 conserved membrane protein of unknown function compare
PP_2222 -0.6 -2.5 conserved protein of unknown function compare
PP_4787 -0.6 -1.5 putative protein with nucleoside triphosphate hydrolase domain compare
PP_5221 -0.6 -1.4 conserved protein of unknown function, UPF0178 family compare
PP_4018 -0.6 -1.3 Acetyltransferase, GNAT family compare
PP_1864 -0.6 -1.5 conserved protein of unknown function compare
PP_0220 -0.6 -2.4 methionine import ATP-binding protein metN2 compare
PP_4008 -0.6 -3.0 ATP-dependent serine protease compare
PP_5148 -0.6 -3.6 conserved membrane protein of unknown function compare
PP_3596 -0.6 -3.5 D-lysine oxidase compare
PP_5107 -0.6 -1.5 Monofunctional biosynthetic peptidoglycan transglycosylase compare
PP_3258 -0.6 -2.4 conserved protein of unknown function compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source Lignin Monomers in Pseudomonas putida KT2440

For carbon source Lignin Monomers across organisms