Experiment set6IT068 for Pseudomonas putida KT2440
Lignin Monomers carbon source
Group: carbon sourceMedia: M9 minimal media_noCarbon + Lignin Monomers (16.6 vol%)
Culturing: Putida_ML5, 48 well microplate; Tecan Infinite F200, Aerobic, at 30 (C), shaken=200 rpm
Growth: about 5.0 generations
By: Mitch on 12/8/17
Media components: 2 mM Magnesium sulfate, 0.1 mM Calcium chloride, 12.8 g/L Sodium phosphate dibasic heptahydrate, 3 g/L Potassium phosphate monobasic, 0.5 g/L Sodium Chloride, 1 g/L Ammonium chloride
Specific Phenotypes
For 11 genes in this experiment
For carbon source Lignin Monomers in Pseudomonas putida KT2440
For carbon source Lignin Monomers across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Aromatic amino acid degradation | 1 |
| Glycerolipid and Glycerophospholipid Metabolism in Bacteria | 1 |
| Phosphate metabolism | 1 |
| Purine conversions | 1 |
| Serine-glyoxylate cycle | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Purine metabolism
- Puromycin biosynthesis
- Lipopolysaccharide biosynthesis
- Glycerolipid metabolism
- Glycerophospholipid metabolism
- Drug metabolism - other enzymes
MetaCyc Pathways
Pathways that contain genes with specific phenotypes: