Experiment set6IT068 for Escherichia coli BW25113
outer cut, LB soft agar motility assay
Group: motilityMedia: LB + Agar (3 g/L)
Culturing: Keio_ML9, Agar plate, Aerobic, at 30 (C), shaken=0 rpm, (Solid)
By: Mark on 2/2/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Specific Phenotypes
For 17 genes in this experiment
For motility Agar in Escherichia coli BW25113
For motility Agar across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Pyrimidine metabolism
- Citrate cycle (TCA cycle)
- Oxidative phosphorylation
- Benzoate degradation via CoA ligation
- Butanoate metabolism
- Reductive carboxylate cycle (CO2 fixation)
- Drug metabolism - other enzymes
- Biosynthesis of phenylpropanoids
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| pseudouridine degradation | 2 | 2 | 1 |
| glycerol-3-phosphate to fumarate electron transfer | 2 | 2 | 1 |
| NADH to fumarate electron transfer | 2 | 2 | 1 |
| hydrogen to fumarate electron transfer | 2 | 1 | 1 |
| succinate to cytochrome aa3 oxidase electron transfer | 2 | 1 | 1 |
| pyrimidine deoxyribonucleosides salvage | 5 | 4 | 2 |
| superpathway of pyrimidine deoxyribonucleoside salvage | 9 | 8 | 2 |
| molybdopterin biosynthesis | 6 | 6 | 1 |
| incomplete reductive TCA cycle | 7 | 5 | 1 |
| pyruvate fermentation to propanoate I | 7 | 5 | 1 |
| TCA cycle VI (Helicobacter) | 9 | 7 | 1 |
| reductive TCA cycle I | 11 | 8 | 1 |
| L-glutamate degradation VIII (to propanoate) | 11 | 5 | 1 |
| reductive TCA cycle II | 12 | 8 | 1 |
| (S)-lactate fermentation to propanoate, acetate and hydrogen | 13 | 10 | 1 |
| mixed acid fermentation | 16 | 16 | 1 |
| Methanobacterium thermoautotrophicum biosynthetic metabolism | 56 | 22 | 1 |