Experiment set6IT067 for Pseudomonas putida KT2440

Compare to:

D-Glucose; D-Xylose; p-Coumaric acid; benzoic acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_0691 -5.5 -3.8 Glutamate 5-kinase compare
PP_4723 -5.3 -12.7 Carbamoyl-phosphate synthase large chain compare
PP_4724 -4.9 -8.1 Carbamoyl-phosphate synthase small chain compare
PP_2371 -4.6 -6.3 Sulphite reductase hemoprotein, beta subunit compare
PP_4909 -4.5 -9.5 phosphoserine phosphatase compare
PP_3999 -3.7 -8.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0293 -3.6 -5.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0290 -3.5 -9.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5155 -3.5 -4.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4126 -2.8 -3.3 NADH-quinone oxidoreductase subunit I compare
PP_0289 -2.8 -9.5 Imidazoleglycerol-phosphate dehydratase compare
PP_0184 -2.7 -6.9 Argininosuccinate lyase compare
PP_0164 -2.7 -9.1 conserved protein of unknown function compare
PP_0967 -2.6 -11.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0292 -2.5 -5.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5289 -2.5 -5.3 Acetylglutamate kinase compare
PP_1994 -2.5 -2.9 tRNA pseudouridine (38-40)synthase compare
PP_2370 -2.4 -2.4 conserved protein of unknown function compare
PP_2000 -2.4 -3.8 amidophosphoribosyl transferase compare
PP_5095 -2.4 -2.2 pyrroline-5-carboxylate reductase compare
PP_2402 -2.3 -3.4 putative Sensor histidine kinase compare
PP_1088 -2.3 -10.7 Argininosuccinate synthase compare
PP_0339 -2.3 -6.7 Pyruvate dehydrogenase E1 component compare
PP_0291 -2.2 -4.8 conserved protein of unknown function compare
PP_4999 -2.2 -2.6 dihydroorotase-like protein compare
PP_1654 -2.2 -5.3 cysteine synthase B compare
PP_0966 -2.1 -11.6 Histidinol dehydrogenase compare
PP_4890 -2.0 -5.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_1215 -2.0 -1.3 Crossover junction endodeoxyribonuclease RuvC compare
PP_5185 -2.0 -6.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4937 -2.0 -5.4 toluene tolerance protein compare
PP_0735 -2.0 -3.6 molybdopterin-synthase adenylyltransferase compare
PP_2327 -2.0 -7.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5104 -1.9 -9.1 thiazole synthase compare
PP_5014 -1.9 -3.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_3519 -1.8 -1.9 putative Lipoprotein compare
PP_0965 -1.8 -8.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2328 -1.8 -5.8 Phosphoadenosine phosphosulfate reductase compare
PP_1377 -1.7 -8.4 beta-ketoadipyl-CoA thiolase compare
PP_4678 -1.7 -11.9 Ketol-acid reductoisomerase compare
PP_1985 -1.7 -5.7 3-isopropylmalate dehydratase large subunit compare
PP_4874 -1.7 -1.1 50S ribosomal protein L9 compare
PP_1079 -1.6 -5.7 Ornithine carbamoyltransferase compare
PP_5015 -1.6 -5.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0082 -1.6 -4.7 tryptophan synthase alpha chain compare
PP_5216 -1.6 -2.1 exopolyphosphatase compare
PP_1988 -1.6 -7.2 3-isopropylmalate dehydrogenase compare
PP_5128 -1.6 -7.5 Dihydroxy-acid dehydratase compare
PP_0001 -1.6 -1.7 probable chromosome-partitioning protein compare
PP_1986 -1.5 -4.0 3-isopropylmalate dehydratase small subunit compare
PP_2356 -1.5 -9.7 putative Phytochrome family protein compare
PP_2336 -1.5 -2.8 aconitate hydratase 1 compare
PP_2388 -1.5 -2.3 Transporter, LysE family compare
PP_1366 -1.5 -1.6 Transcriptional regulator MvaT, P16 subunit compare
PP_3511 -1.5 -7.1 Branched-chain-amino-acid aminotransferase compare
PP_0083 -1.5 -5.2 tryptophan synthase beta chain compare
PP_0888 -1.5 -2.3 Photosynthetic apparatus regulatory protein RegA compare
PP_4680 -1.5 -9.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1362 -1.5 -4.1 pyruvate kinase II compare
PP_2354 -1.5 -8.5 Sensory box histidine kinase/response regulator compare
PP_2442 -1.4 -2.8 conserved protein of unknown function, DUF480 family compare
PP_2031 -1.4 -1.9 conserved protein of unknown function compare
PP_0685 -1.4 -2.9 conserved protein of unknown function compare
PP_4943 -1.4 -1.5 putative Glycosyl transferase compare
PP_1022 -1.4 -4.2 glucose 6-phosphate-1-dehydrogenase compare
PP_2309 -1.3 -2.1 conserved protein of unknown function compare
PP_1734 -1.3 -2.2 Probable septum site-determining protein MinC compare
PP_4696 -1.3 -3.2 Nitrogen regulation protein NR(I) compare
PP_3951 -1.3 -6.2 3-oxoadipate CoA-transferase subunit A compare
PP_4782 -1.3 -3.9 Phosphomethylpyrimidine kinase compare
PP_4799 -1.3 -2.7 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1233 -1.3 -4.6 sulfurtransferase compare
PP_4679 -1.2 -5.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5537 -1.2 -3.7 conserved membrane protein of unknown function compare
PP_3952 -1.2 -7.3 3-oxoadipate CoA-transferase subunit A compare
PP_3840 -1.2 -1.7 conserved protein of unknown function compare
PP_4124 -1.2 -3.0 NADH-quinone oxidoreductase subunit G compare
PP_1493 -1.2 -3.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_3946 -1.1 -1.7 HTH-type transcriptional repressor NicR compare
PP_5328 -1.1 -4.1 putative phosphate transport system permease protein compare
PP_4824 -1.1 -3.9 Sensor histidine kinase/response regulator compare
PP_4122 -1.1 -1.7 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2378 -1.1 -2.1 Fe/S biogenesis protein NfuA compare
PP_4379 -1.1 -5.7 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4129 -1.1 -2.6 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1609 -1.0 -2.0 conserved protein of unknown function compare
PP_1384 -1.0 -5.6 Probable efflux pump outer membrane protein TtgC compare
PP_0254 -1.0 -3.4 conserved protein of unknown function compare
PP_2337 -1.0 -1.7 aconitate isomerase compare
PP_2414 -1.0 -1.6 conserved exported protein of unknown function compare
PP_5093 -1.0 -1.6 twitching motility protein compare
PP_1995 -1.0 -5.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4917 -1.0 -3.0 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1231 -1.0 -4.2 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1348 -1.0 -3.5 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0401 -1.0 -3.0 Ribosomal RNA small subunit methyltransferase A compare
PP_0346 -1.0 -7.1 putative Heptose kinase WapQ compare
PP_4120 -1.0 -2.5 NADH-quinone oxidoreductase subunit B compare
PP_5303 -1.0 -3.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1812 -1.0 -2.5 conserved protein of unknown function compare
PP_4131 -1.0 -3.6 NADH-quinone oxidoreductase subunit N compare
PP_1664 -1.0 -3.3 phosphoribosylglycinamide formyltransferase 1 compare
PP_0630 -0.9 -1.1 DNA gyrase inhibitor YacG compare
PP_0834 -0.9 -1.0 Sec translocation complex subunit YajC compare
PP_2390 -0.9 -5.5 Transcriptional regulator, LysR family compare
PP_1025 -0.9 -6.0 2-isopropylmalate synthase compare
PP_5329 -0.9 -3.3 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4340 -0.9 -3.5 response regulator for chemotactic signal transduction compare
PP_1468 -0.9 -1.9 Tyrosine recombinase XerD compare
PP_4004 -0.9 -2.4 DNA translocase FtsK compare
PP_0362 -0.9 -7.2 Biotin synthase compare
PP_4121 -0.9 -3.1 NADH-quinone oxidoreductase subunit C/D compare
PP_4364 -0.9 -3.3 putative Anti-sigma F factor antagonist compare
PP_4720 -0.9 -2.5 putative RNA binding protein compare
PP_1589 -0.9 -5.4 uridylyltransferase compare
PP_2633 -0.9 -1.7 conserved protein of unknown function compare
PP_0421 -0.9 -5.0 Anthranilate phosphoribosyltransferase compare
PP_0276 -0.8 -1.1 Transcriptional regulator, Cro/CI family compare
PP_5098 -0.8 -5.0 methionine biosynthesis protein MetW compare
PP_t11 -0.8 -2.5 tRNA-Lys compare
PP_0846 -0.8 -1.1 DnaK-like molecular chaperone specific for IscU compare
PP_1380 -0.8 -3.1 3-oxoadipate enol-lactonase 2 compare
PP_3105 -0.8 -1.3 conserved membrane protein of unknown function compare
PP_1142 -0.8 -1.2 conserved protein of unknown function compare
PP_1150 -0.8 -5.1 putative Membrane protein compare
PP_5028 -0.8 -2.0 proline iminopeptidase compare
PP_5097 -0.8 -5.4 homoserine O-acetyltransferase compare
PP_4875 -0.8 -3.1 conserved membrane protein of unknown function compare
PP_1658 -0.8 -3.2 conserved protein of unknown function compare
PP_3821 -0.8 -4.0 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0420 -0.8 -5.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1216 -0.8 -0.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4828 -0.8 -1.0 Precorrin-8X methylmutase compare
PP_2001 -0.7 -4.4 O-succinylhomoserine sulfhydrylase compare
PP_4342 -0.7 -2.2 flagellar synthesis regulator, putative ATPase compare
PP_3481 -0.7 -2.4 conserved exported protein of unknown function compare
PP_0787 -0.7 -2.8 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5017 -0.7 -1.2 Sec-independent protein translocase protein TatB compare
PP_4262 -0.7 -2.2 Cytochrome oxidase maturation protein, cbb3-type compare
PP_0417 -0.7 -6.1 Anthranilate synthase component 1 compare
PP_0365 -0.7 -5.0 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0901 -0.7 -4.4 DNA-binding response regulator compare
PP_t10 -0.7 -1.5 tRNA-Pro compare
PP_1379 -0.7 -4.2 3-carboxy-cis,cis-muconate cycloisomerase compare
PP_4699 -0.7 -2.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1208 -0.7 -1.1 conserved protein of unknown function, SlyX family compare
PP_5279 -0.7 -1.9 conserved protein of unknown function compare
PP_5327 -0.7 -3.3 putative phosphate ABC transporter, permease subunit compare
PP_1678 -0.7 -2.7 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_0422 -0.7 -3.5 Indole-3-glycerol phosphate synthase compare
PP_2433 -0.7 -1.3 conserved protein of unknown function compare
PP_1304 -0.7 -5.0 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2403 -0.7 -1.5 Chemotaxis protein CheY compare
PP_3443 -0.7 -4.6 putative glyceraldehyde-3-phosphate dehydrogenase compare
PP_1713 -0.7 -2.1 Transcriptional regulator PcaQ compare
PP_2929 -0.7 -3.8 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_5350 -0.7 -1.6 Transcriptional regulator, RpiR family compare
PP_0393 -0.7 -0.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0117 -0.7 -3.1 Zn(2+) ABC transporter - permease subunit compare
PP_4984 -0.7 -4.0 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_2899 -0.7 -1.0 conserved exported protein of unknown function compare
PP_4481 -0.7 -3.9 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_1673 -0.6 -3.5 cobyrinate a,c-diamide synthase compare
PP_4895 -0.6 -1.6 tRNA dimethylallyltransferase compare
PP_1164 -0.6 -2.0 Transcriptional regulator, LysR family compare
PP_0218 -0.6 -4.2 Sensory box protein compare
PP_5236 -0.6 -4.3 conserved protein of unknown function compare
PP_5352 -0.6 -4.2 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_0902 -0.6 -3.7 integral membrane sensor signal transduction histidine kinase compare
PP_4944 -0.6 -1.9 Carbamoyltransferase compare
PP_2044 -0.6 -1.3 conserved inner membrane protein of unknown function compare
PP_3487 -0.6 -1.8 conserved exported protein of unknown function compare
PP_2510 -0.6 -1.0 conserved protein of unknown function compare
PP_4941 -0.6 -3.9 conserved exported protein of unknown function compare
PP_3766 -0.6 -1.7 Lactoylglutathione lyase compare
PP_4449 -0.6 -1.8 conserved protein of unknown function compare
PP_0782 -0.6 -2.4 conserved protein of unknown function compare
PP_3883 -0.6 -1.7 putative Phage holin compare
PP_3806 -0.6 -2.0 Hydrolase, isochorismatase family compare
PP_2299 -0.6 -1.8 Trigger factor compare
PP_0440 -0.6 -2.1 Elongation factor Tu-A compare
PP_2160 -0.6 -1.7 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_2341 -0.6 -1.5 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_3357 -0.6 -2.6 p-hydroxybenzaldehyde dehydrogenase vdh (EC 1.2.1.64) (from data) compare
PP_2214 -0.6 -2.0 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_0666 -0.6 -2.4 conserved protein of unknown function compare
PP_4989 -0.6 -1.9 Protein PilJ compare
PP_2898 -0.6 -1.8 conserved exported protein of unknown function compare
PP_0366 -0.6 -2.9 dethiobiotin synthetase compare
PP_4504 -0.6 -1.6 conserved exported protein of unknown function compare
PP_4655 -0.6 -3.7 protocatechuate 3,4-dioxygenase alpha chain compare
PP_0435 -0.6 -4.7 Peptidase, M23/M37 family compare
PP_2513 -0.6 -2.6 4-oxalomesaconate tautomerase compare
PP_0364 -0.6 -3.5 pimeloyl-[acp] methyl ester esterase compare
PP_0848 -0.6 -1.1 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_3963 -0.6 -1.7 conserved protein of unknown function compare
PP_2159 -0.6 -2.4 Copper-binding protein, plastocyanin/azurin family compare
PP_2661 -0.6 -2.4 conserved protein of unknown function compare
PP_1824 -0.6 -0.8 Smr domain protein compare
PP_4681 -0.6 -2.3 conserved protein of unknown function compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source D-Glucose in Pseudomonas putida KT2440

For carbon source D-Glucose across organisms