Experiment set6IT064 for Pseudomonas putida KT2440

Compare to:

Valerolactam carbon source

200 most important genes:

  gene name fitness t score description  
PP_0164 -5.2 -7.9 conserved protein of unknown function compare
PP_4723 -5.0 -12.2 Carbamoyl-phosphate synthase large chain compare
PP_2371 -4.8 -6.6 Sulphite reductase hemoprotein, beta subunit compare
PP_4724 -4.4 -7.9 Carbamoyl-phosphate synthase small chain compare
PP_2910 -4.1 -12.1 L-2-hydroxyglutarate oxidase compare
PP_3999 -4.0 -6.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4909 -4.0 -9.2 phosphoserine phosphatase compare
PP_1654 -3.9 -4.5 cysteine synthase B compare
PP_0691 -3.8 -5.8 Glutamate 5-kinase compare
PP_0292 -3.7 -4.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0290 -3.6 -11.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_2328 -3.6 -7.6 Phosphoadenosine phosphosulfate reductase compare
PP_5289 -3.5 -5.9 Acetylglutamate kinase compare
PP_4999 -3.5 -2.4 dihydroorotase-like protein compare
PP_5155 -3.5 -5.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0289 -3.5 -9.8 Imidazoleglycerol-phosphate dehydratase compare
PP_5095 -3.4 -2.3 pyrroline-5-carboxylate reductase compare
PP_1088 -3.0 -10.8 Argininosuccinate synthase compare
PP_5185 -3.0 -7.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0293 -2.9 -2.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0184 -2.8 -6.2 Argininosuccinate lyase compare
PP_1986 -2.7 -4.7 3-isopropylmalate dehydratase small subunit compare
PP_4126 -2.7 -3.1 NADH-quinone oxidoreductase subunit I compare
PP_5014 -2.6 -5.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_0214 -2.5 -6.7 4-aminobutyrate aminotransferase compare
PP_0966 -2.4 -12.1 Histidinol dehydrogenase compare
PP_2370 -2.4 -2.6 conserved protein of unknown function compare
PP_3511 -2.4 -10.5 Branched-chain-amino-acid aminotransferase compare
PP_4890 -2.3 -5.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_5015 -2.3 -4.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4696 -2.3 -3.1 Nitrogen regulation protein NR(I) compare
PP_0967 -2.3 -8.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0291 -2.2 -4.4 conserved protein of unknown function compare
PP_4680 -2.2 -13.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1079 -2.2 -7.4 Ornithine carbamoyltransferase compare
PP_1988 -2.1 -8.0 3-isopropylmalate dehydrogenase compare
PP_5216 -2.1 -2.0 exopolyphosphatase compare
PP_1985 -2.1 -6.5 3-isopropylmalate dehydratase large subunit compare
PP_0213 -2.1 -7.3 succinate-semialdehyde dehydrogenase (NADP+) compare
PP_2909 -2.0 -6.6 glutarate hydroxylase (from data) compare
PP_1215 -2.0 -1.3 Crossover junction endodeoxyribonuclease RuvC compare
PP_4678 -2.0 -11.8 Ketol-acid reductoisomerase compare
PP_0965 -1.9 -8.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4799 -1.9 -3.1 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2327 -1.9 -6.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5128 -1.8 -8.5 Dihydroxy-acid dehydratase compare
PP_2000 -1.8 -3.2 amidophosphoribosyl transferase compare
PP_1025 -1.7 -12.1 2-isopropylmalate synthase compare
PP_2336 -1.7 -2.9 aconitate hydratase 1 compare
PP_1664 -1.7 -4.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_4129 -1.7 -3.2 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4782 -1.6 -3.7 Phosphomethylpyrimidine kinase compare
PP_4679 -1.6 -5.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4874 -1.6 -1.0 50S ribosomal protein L9 compare
PP_1912 -1.5 -4.8 Phosphate acyltransferase compare
PP_0787 -1.5 -4.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2720 -1.5 -2.1 conserved protein of unknown function compare
PP_t10 -1.4 -3.4 tRNA-Pro compare
PP_5104 -1.4 -6.6 thiazole synthase compare
PP_4364 -1.4 -4.3 putative Anti-sigma F factor antagonist compare
PP_4895 -1.4 -2.4 tRNA dimethylallyltransferase compare
PP_5230 -1.4 -2.8 Tyrosine recombinase XerC compare
PP_5350 -1.3 -2.6 Transcriptional regulator, RpiR family compare
PP_1734 -1.3 -2.2 Probable septum site-determining protein MinC compare
PP_2337 -1.3 -1.8 aconitate isomerase compare
PP_0888 -1.3 -2.0 Photosynthetic apparatus regulatory protein RegA compare
PP_0362 -1.2 -7.8 Biotin synthase compare
PP_1826 -1.2 -2.3 Hydrolase, isochorismatase family compare
PP_3926 -1.2 -2.1 short-chain dehydrogenase compare
PP_1231 -1.2 -4.7 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1824 -1.2 -1.4 Smr domain protein compare
PP_1995 -1.2 -5.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5028 -1.2 -2.5 proline iminopeptidase compare
PP_1468 -1.1 -2.2 Tyrosine recombinase XerD compare
PP_3790 -1.1 -7.2 diaminopimelate epimerase compare
PP_5528 -1.1 -1.6 conserved protein of unknown function compare
PP_5328 -1.1 -4.0 putative phosphate transport system permease protein compare
PP_5331 -1.1 -3.6 Long-chain acyl-CoA thioester hydrolase compare
PP_2414 -1.1 -2.4 conserved exported protein of unknown function compare
PP_2388 -1.1 -3.2 Transporter, LysE family compare
PP_0339 -1.1 -4.1 Pyruvate dehydrogenase E1 component compare
PP_0833 -1.1 -0.7 queuine tRNA-ribosyltransferase compare
PP_4829 -1.1 -3.0 putative precorrin-3B synthase compare
PP_4130 -1.1 -2.9 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1562 -1.1 -2.5 putative Phage terminase, small subunit compare
PP_2030 -1.1 -3.3 conserved protein of unknown function compare
PP_1381 -1.1 -1.5 4-carboxymuconolactone decarboxylase compare
PP_2499 -1.0 -0.9 conserved protein of unknown function compare
PP_2929 -1.0 -6.0 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_4342 -1.0 -2.7 flagellar synthesis regulator, putative ATPase compare
PP_2378 -1.0 -2.1 Fe/S biogenesis protein NfuA compare
PP_4199 -1.0 -1.6 putative Lipoprotein compare
PP_1764 -1.0 -5.4 Phosphoglycolate phosphatase 2 compare
PP_5329 -1.0 -2.9 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_3102 -1.0 -3.6 conserved protein of unknown function compare
PP_0082 -1.0 -3.0 tryptophan synthase alpha chain compare
PP_3105 -1.0 -2.6 conserved membrane protein of unknown function compare
PP_2402 -1.0 -1.8 putative Sensor histidine kinase compare
PP_4121 -0.9 -3.1 NADH-quinone oxidoreductase subunit C/D compare
PP_2928 -0.9 -5.0 Saccharopine dehydrogenase compare
PP_1410 -0.9 -2.0 conserved protein of unknown function compare
PP_2390 -0.9 -5.4 Transcriptional regulator, LysR family compare
PP_0117 -0.9 -3.6 Zn(2+) ABC transporter - permease subunit compare
PP_0393 -0.9 -0.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5097 -0.9 -6.7 homoserine O-acetyltransferase compare
PP_1303 -0.9 -5.0 Sulfate adenylyltransferase subunit 2 compare
PP_1237 -0.9 -1.5 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2044 -0.9 -1.6 conserved inner membrane protein of unknown function compare
PP_5327 -0.9 -4.5 putative phosphate ABC transporter, permease subunit compare
PP_4997 -0.9 -2.1 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_2433 -0.9 -2.7 conserved protein of unknown function compare
PP_4695 -0.9 -5.3 Sensory box histidine kinase compare
PP_0366 -0.9 -3.7 dethiobiotin synthetase compare
PP_5098 -0.8 -3.4 methionine biosynthesis protein MetW compare
PP_4902 -0.8 -1.7 Oligoribonuclease compare
PP_4004 -0.8 -2.3 DNA translocase FtsK compare
PP_0083 -0.8 -3.2 tryptophan synthase beta chain compare
PP_1217 -0.8 -1.9 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5093 -0.8 -1.0 twitching motility protein compare
PP_4131 -0.8 -3.0 NADH-quinone oxidoreductase subunit N compare
PP_2999 -0.8 -1.6 Glyoxalase family protein compare
PP_0365 -0.8 -5.2 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_3506 -0.8 -2.9 Magnesium chelatase, subunit ChII compare
PP_1377 -0.8 -4.4 beta-ketoadipyl-CoA thiolase compare
PP_3516 -0.8 -3.4 Transcriptional regulator, AraC family compare
PP_0422 -0.8 -2.8 Indole-3-glycerol phosphate synthase compare
PP_1216 -0.8 -1.1 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0158 -0.8 -5.5 glutaryl-CoA dehydrogenase compare
PP_2217 -0.8 -1.6 enoyl-CoA hydratase compare
PP_1076 -0.8 -2.9 aquaglyceroporin compare
PP_4620 -0.8 -4.2 Fumarylacetoacetase compare
PP_2214 -0.8 -3.0 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_5227 -0.8 -3.6 diaminopimelate decarboxylase compare
PP_0363 -0.8 -5.3 8-amino-7-oxononanoate synthase compare
PP_4120 -0.8 -2.1 NADH-quinone oxidoreductase subunit B compare
PP_2001 -0.7 -4.5 O-succinylhomoserine sulfhydrylase compare
PP_2459 -0.7 -2.1 ribose pyranase compare
PP_0127 -0.7 -2.4 Thiol:disulfide interchange protein compare
PP_4984 -0.7 -4.9 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0627 -0.7 -2.3 conserved protein of unknown function compare
PP_0735 -0.7 -1.6 molybdopterin-synthase adenylyltransferase compare
PP_5022 -0.7 -1.3 Glutamine transport ATP-binding protein GlnQ compare
PP_4264 -0.7 -4.4 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_4671 -0.7 -3.5 conserved exported protein of unknown function compare
PP_0417 -0.7 -6.0 Anthranilate synthase component 1 compare
PP_5471 -0.7 -1.1 putative response regulator receiver protein compare
PP_4379 -0.7 -3.2 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0421 -0.7 -3.6 Anthranilate phosphoribosyltransferase compare
PP_5029 -0.7 -5.0 N-formylglutamate deformylase compare
PP_5198 -0.7 -1.7 conserved protein of unknown function compare
PP_4830 -0.7 -3.2 precorrin-6Y C(5,15)-methyltransferase compare
PP_1426 -0.7 -4.9 L-aspartate oxidase compare
PP_1233 -0.7 -2.7 sulfurtransferase compare
PP_1142 -0.7 -1.1 conserved protein of unknown function compare
PP_3761 -0.7 -5.2 Sensor histidine kinase/response regulator compare
PP_2932 -0.7 -4.3 Amidase family protein compare
PP_4065 -0.7 -3.5 methylcrotonyl-CoA carboxylase biotin-containing subunit beta compare
PP_3892 -0.7 -1.1 conserved protein of unknown function compare
PP_1906 -0.7 -2.1 ribosomal large subunit pseudouridine synthase C compare
PP_2413 -0.7 -4.9 GGDEF family protein compare
PP_1675 -0.7 -4.4 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_0218 -0.6 -3.2 Sensory box protein compare
PP_1493 -0.6 -1.8 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2633 -0.6 -1.5 conserved protein of unknown function compare
PP_4196 -0.6 -2.0 conserved exported protein of unknown function compare
PP_4005 -0.6 -1.8 Leucyl/phenylalanyl-tRNA--protein transferase compare
PP_4835 -0.6 -1.9 conserved exported protein of unknown function compare
PP_0640 -0.6 -1.6 conserved protein of unknown function compare
PP_5491 -0.6 -1.9 conserved protein of unknown function with SEC-C motif domain compare
PP_2723 -0.6 -2.1 Uncharacterized oxidoreductase YhdF compare
PP_4917 -0.6 -1.9 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_5035 -0.6 -3.4 Histidine utilization repressor compare
PP_2389 -0.6 -2.6 conserved protein of unknown function compare
PP_1672 -0.6 -2.7 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_1681 -0.6 -3.9 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_1348 -0.6 -3.4 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1304 -0.6 -4.0 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_0809 -0.6 -3.9 disulfide bond formation protein B compare
PP_5702 -0.6 -1.9 conserved protein of unknown function compare
PP_2145 -0.6 -2.5 beta-N-acetylglucosaminidase compare
PP_0874 -0.6 -1.4 conserved protein of unknown function compare
PP_3952 -0.6 -4.0 3-oxoadipate CoA-transferase subunit A compare
PP_1763 -0.6 -1.3 putative oxidoreductase compare
PP_3035 -0.6 -1.7 conserved protein of unknown function compare
PP_3951 -0.6 -3.2 3-oxoadipate CoA-transferase subunit A compare
PP_3307 -0.6 -1.1 conserved protein of unknown function compare
PP_3341 -0.6 -2.0 nickel-responsive regulator compare
PP_5352 -0.6 -3.8 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_4824 -0.6 -2.2 Sensor histidine kinase/response regulator compare
PP_4844 -0.6 -2.4 putative Urea ABC transporter, ATP-binding protein compare
PP_5267 -0.6 -1.1 putative cytochrome c5 compare
PP_1387 -0.6 -2.7 Probable HTH-type transcriptional regulator TtgR compare
PP_0401 -0.6 -1.9 Ribosomal RNA small subunit methyltransferase A compare
PP_5303 -0.6 -2.4 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2383 -0.6 -3.2 Transcriptional regulator, AraC family compare
PP_2029 -0.6 -1.3 von Willebrand factor type A domain protein compare
PP_2568 -0.6 -1.0 Ring-cleaving dioxygenase compare
PP_2196 -0.6 -1.7 agmatinase compare
PP_5393 -0.6 -0.9 putative metal-binding chaperone compare
PP_4122 -0.6 -0.7 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source 2-Piperidinone in Pseudomonas putida KT2440

For carbon source 2-Piperidinone across organisms