Experiment set6IT063 for Pseudomonas putida KT2440

Compare to:

Vanillic Acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_4724 -5.1 -6.1 Carbamoyl-phosphate synthase small chain compare
PP_4723 -4.5 -12.6 Carbamoyl-phosphate synthase large chain compare
PP_2371 -4.4 -6.0 Sulphite reductase hemoprotein, beta subunit compare
PP_0691 -4.0 -4.7 Glutamate 5-kinase compare
PP_3999 -3.7 -6.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1654 -3.4 -4.5 cysteine synthase B compare
PP_1381 -3.3 -2.3 4-carboxymuconolactone decarboxylase compare
PP_3952 -3.2 -10.2 3-oxoadipate CoA-transferase subunit A compare
PP_3946 -3.0 -2.0 HTH-type transcriptional repressor NicR compare
PP_1377 -2.9 -7.9 beta-ketoadipyl-CoA thiolase compare
PP_4909 -2.7 -8.3 phosphoserine phosphatase compare
PP_3951 -2.6 -5.7 3-oxoadipate CoA-transferase subunit A compare
PP_0290 -2.6 -7.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0293 -2.5 -4.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1468 -2.5 -3.3 Tyrosine recombinase XerD compare
PP_2370 -2.5 -2.5 conserved protein of unknown function compare
PP_4999 -2.5 -2.4 dihydroorotase-like protein compare
PP_2328 -2.4 -7.0 Phosphoadenosine phosphosulfate reductase compare
PP_0292 -2.4 -5.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1088 -2.3 -9.8 Argininosuccinate synthase compare
PP_4364 -2.2 -4.6 putative Anti-sigma F factor antagonist compare
PP_5014 -2.1 -4.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_5289 -2.0 -4.8 Acetylglutamate kinase compare
PP_0967 -2.0 -7.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1713 -2.0 -2.6 Transcriptional regulator PcaQ compare
PP_0164 -2.0 -7.7 conserved protein of unknown function compare
PP_0184 -1.9 -5.3 Argininosuccinate lyase compare
PP_2000 -1.9 -3.1 amidophosphoribosyl transferase compare
PP_2433 -1.9 -1.8 conserved protein of unknown function compare
PP_2217 -1.9 -4.6 enoyl-CoA hydratase compare
PP_0289 -1.9 -7.7 Imidazoleglycerol-phosphate dehydratase compare
PP_1988 -1.8 -7.1 3-isopropylmalate dehydrogenase compare
PP_4701 -1.8 -1.7 glucose-6-phosphate isomerase compare
PP_0966 -1.8 -7.6 Histidinol dehydrogenase compare
PP_t29 -1.7 -2.6 tRNA-Ala compare
PP_5571 -1.7 -2.1 conserved protein of unknown function compare
PP_2327 -1.7 -5.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1079 -1.7 -5.4 Ornithine carbamoyltransferase compare
PP_0339 -1.7 -5.1 Pyruvate dehydrogenase E1 component compare
PP_4890 -1.7 -6.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_1215 -1.7 -1.1 Crossover junction endodeoxyribonuclease RuvC compare
PP_4004 -1.7 -3.1 DNA translocase FtsK compare
PP_5185 -1.6 -5.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4680 -1.6 -11.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3511 -1.6 -7.1 Branched-chain-amino-acid aminotransferase compare
PP_5528 -1.6 -2.2 conserved protein of unknown function compare
PP_5155 -1.6 -3.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4678 -1.6 -9.3 Ketol-acid reductoisomerase compare
PP_4120 -1.5 -3.4 NADH-quinone oxidoreductase subunit B compare
PP_1994 -1.5 -2.6 tRNA pseudouridine (38-40)synthase compare
PP_1986 -1.5 -2.7 3-isopropylmalate dehydratase small subunit compare
PP_4696 -1.5 -3.0 Nitrogen regulation protein NR(I) compare
PP_2214 -1.4 -4.5 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_2337 -1.4 -1.8 aconitate isomerase compare
PP_1233 -1.4 -4.2 sulfurtransferase compare
PP_4993 -1.3 -2.3 Glutathione synthetase compare
PP_1985 -1.3 -3.3 3-isopropylmalate dehydratase large subunit compare
PP_5216 -1.3 -1.3 exopolyphosphatase compare
PP_5327 -1.3 -5.0 putative phosphate ABC transporter, permease subunit compare
PP_0291 -1.3 -2.6 conserved protein of unknown function compare
PP_0848 -1.3 -2.2 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_4874 -1.3 -0.8 50S ribosomal protein L9 compare
PP_4247 -1.3 -1.7 Exonuclease compare
PP_0965 -1.2 -7.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0677 -1.2 -2.5 putative Lipoprotein compare
PP_5104 -1.2 -6.9 thiazole synthase compare
PP_3365 -1.2 -1.5 Acetolactate synthase compare
PP_5028 -1.2 -2.1 proline iminopeptidase compare
PP_4622 -1.2 -3.8 Hmg transcriptional repressor compare
PP_3493 -1.2 -5.0 Transcriptional regulator, LysR family compare
PP_0653 -1.2 -1.3 conserved protein of unknown function compare
PP_4799 -1.2 -2.2 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5098 -1.2 -5.1 methionine biosynthesis protein MetW compare
PP_4122 -1.1 -1.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4273 -1.1 -1.7 Transcriptional regulator, MerR family compare
PP_1025 -1.1 -8.4 2-isopropylmalate synthase compare
PP_2215 -1.1 -3.8 acetyl-CoA acetyltransferase compare
PP_5128 -1.1 -5.1 Dihydroxy-acid dehydratase compare
PP_4824 -1.1 -3.1 Sensor histidine kinase/response regulator compare
PP_3539 -1.1 -2.8 putative Transcriptional regulator compare
PP_3737 -1.1 -6.9 vanillate O-demethylase oxidoreductase conserved
PP_5015 -1.1 -3.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0512 -1.1 -1.4 hypothetical protein compare
PP_2356 -1.1 -6.5 putative Phytochrome family protein compare
PP_1378 -1.1 -5.9 alpha-ketoglutarate permease compare
PP_2160 -1.1 -2.6 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_2646 -1.0 -1.8 conserved protein of unknown function compare
PP_4681 -1.0 -3.3 conserved protein of unknown function compare
PP_2756 -1.0 -2.0 conserved protein of unknown function compare
PP_3398 -1.0 -1.9 putative Curli fiber surface-exposed nucleator CsgB compare
PP_1026 -1.0 -3.0 Peptidase, M23/M37 family compare
PP_5017 -1.0 -1.3 Sec-independent protein translocase protein TatB compare
PP_3736 -1.0 -5.4 vanillate O-demethylase oxygenase subunit conserved
PP_0978 -1.0 -3.0 conserved protein of unknown function compare
PP_4126 -1.0 -1.6 NADH-quinone oxidoreductase subunit I compare
PP_5095 -1.0 -1.0 pyrroline-5-carboxylate reductase compare
PP_0735 -1.0 -1.9 molybdopterin-synthase adenylyltransferase compare
PP_3286 -0.9 -3.4 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_1142 -0.9 -1.3 conserved protein of unknown function compare
PP_5748 -0.9 -1.2 cytochrome c heme lyase subunit compare
PP_0610 -0.9 -2.3 conserved exported protein of unknown function compare
PP_1380 -0.9 -3.5 3-oxoadipate enol-lactonase 2 compare
PP_1629 -0.9 -3.1 Protein RecA compare
PP_0434 -0.9 -6.6 Anhydro-N-acetylmuramic acid kinase compare
PP_4880 -0.9 -4.3 exoribonuclease R compare
PP_2336 -0.9 -2.1 aconitate hydratase 1 compare
PP_2932 -0.9 -5.5 Amidase family protein compare
PP_3494 -0.9 -2.6 conserved exported protein of unknown function compare
PP_2354 -0.9 -5.2 Sensory box histidine kinase/response regulator compare
PP_5329 -0.9 -2.9 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_3880 -0.9 -1.3 conserved exported protein of unknown function compare
PP_4340 -0.8 -3.1 response regulator for chemotactic signal transduction compare
PP_4937 -0.8 -2.8 toluene tolerance protein compare
PP_1355 -0.8 -7.2 Muropeptide permease AmpG compare
PP_4679 -0.8 -3.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0770 -0.8 -3.2 PemI-like protein compare
PP_4392 -0.8 -4.9 chemotaxis protein methyltransferase compare
PP_5328 -0.8 -3.2 putative phosphate transport system permease protein compare
PP_3409 -0.8 -1.9 putative Cobalamin biosynthesis protein cobE compare
PP_4782 -0.8 -2.1 Phosphomethylpyrimidine kinase compare
PP_4835 -0.8 -1.3 conserved exported protein of unknown function compare
PP_0440 -0.8 -1.5 Elongation factor Tu-A compare
PP_0362 -0.8 -5.7 Biotin synthase compare
PP_2016 -0.8 -2.2 conserved protein of unknown function compare
PP_3590 -0.8 -4.3 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_0787 -0.8 -2.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_3580 -0.8 -2.0 conserved protein of unknown function compare
PP_4697 -0.8 -1.7 poly(A) polymerase compare
PP_5350 -0.8 -1.7 Transcriptional regulator, RpiR family compare
PP_0833 -0.8 -0.5 queuine tRNA-ribosyltransferase compare
PP_1379 -0.8 -4.2 3-carboxy-cis,cis-muconate cycloisomerase compare
PP_4207 -0.8 -2.7 conserved protein of unknown function compare
PP_1734 -0.8 -1.5 Probable septum site-determining protein MinC compare
PP_1616 -0.8 -4.6 formaldehyde dehydrogenase, glutathione-dependent compare
PP_2402 -0.8 -1.5 putative Sensor histidine kinase compare
PP_2028 -0.8 -1.8 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_4695 -0.8 -4.3 Sensory box histidine kinase compare
PP_2414 -0.8 -0.9 conserved exported protein of unknown function compare
PP_4989 -0.8 -1.7 Protein PilJ compare
PP_4338 -0.8 -4.1 Chemotaxis histidine kinase CheA compare
PP_1216 -0.8 -1.1 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1832 -0.7 -2.9 putative Oxidase compare
PP_1231 -0.7 -2.5 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5489 -0.7 -2.8 conserved protein of unknown function compare
PP_4910 -0.7 -1.2 conserved protein of unknown function compare
PP_2540 -0.7 -2.6 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_4159 -0.7 -1.8 Potassium-transporting ATPase C chain compare
PP_4577 -0.7 -3.4 UPF0271 protein PP_4577 compare
PP_0365 -0.7 -5.0 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_3318 -0.7 -1.9 conserved protein of unknown function compare
PP_0048 -0.7 -1.1 conserved protein of unknown function compare
PP_2816 -0.7 -2.5 putative Transcriptional regulator NfxB compare
PP_0413 -0.7 -4.8 Polyamine ABC transporter, permease protein compare
PP_2145 -0.7 -3.9 beta-N-acetylglucosaminidase compare
PP_0405 -0.7 -5.6 conserved protein of unknown function compare
PP_4656 -0.7 -3.6 protocatechuate 3,4-dioxygenase beta chain compare
PP_4655 -0.7 -3.2 protocatechuate 3,4-dioxygenase alpha chain compare
PP_4227 -0.7 -1.5 conserved protein of unknown function compare
PP_5279 -0.7 -1.6 conserved protein of unknown function compare
PP_4426 -0.7 -2.7 Amino acid ABC transporter, permease protein compare
PP_5507 -0.7 -2.2 protein of unknown function compare
PP_0401 -0.7 -1.4 Ribosomal RNA small subunit methyltransferase A compare
PP_2030 -0.7 -2.2 conserved protein of unknown function compare
PP_1764 -0.7 -2.8 Phosphoglycolate phosphatase 2 compare
PP_1673 -0.7 -2.9 cobyrinate a,c-diamide synthase compare
PP_1675 -0.7 -4.2 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1348 -0.7 -3.3 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_3527 -0.7 -4.7 Transcriptional regulator, TetR family compare
PP_1878 -0.7 -3.2 conserved protein of unknown function compare
PP_3829 -0.7 -2.5 Molybdenum transport system permease protein ModB compare
PP_5488 -0.6 -2.0 conserved protein of unknown function compare
PP_3603 -0.6 -3.2 Transcriptional regulator, GntR family compare
PP_1568 -0.6 -1.1 conserved protein of unknown function compare
PP_2530 -0.6 -1.5 conserved protein of unknown function compare
PP_0621 -0.6 -2.4 conserved protein of unknown function compare
PP_3014 -0.6 -1.2 conserved exported protein of unknown function compare
PP_1038 -0.6 -1.5 conserved protein of unknown function compare
PP_1871 -0.6 -3.0 Protease HtpX compare
PP_1164 -0.6 -1.8 Transcriptional regulator, LysR family compare
PP_3035 -0.6 -1.5 conserved protein of unknown function compare
PP_3227 -0.6 -2.4 Transcriptional regulator, LysR family compare
PP_0672 -0.6 -4.7 Sensory box protein compare
PP_4342 -0.6 -1.8 flagellar synthesis regulator, putative ATPase compare
PP_5063 -0.6 -2.5 betaine aldehyde dehydrogenase, NAD-dependent compare
PP_3563 -0.6 -1.5 conserved exported protein of unknown function compare
PP_5097 -0.6 -3.8 homoserine O-acetyltransferase compare
PP_4828 -0.6 -0.6 Precorrin-8X methylmutase compare
PP_3947 -0.6 -2.9 nicotinate dehydrogenase subunit A compare
PP_1906 -0.6 -1.6 ribosomal large subunit pseudouridine synthase C compare
PP_5569 -0.6 -1.5 protein of unknown function of phage origin compare
PP_4546 -0.6 -1.5 ATP-dependent helicase HrpA compare
PP_4308 -0.6 -2.0 Transcriptional regulator, AsnC family compare
PP_1208 -0.6 -0.9 conserved protein of unknown function, SlyX family compare
PP_2384 -0.6 -2.9 conserved membrane protein of unknown function compare
PP_4985 -0.6 -2.2 16S rRNA m3U1498 methyltransferase compare
PP_1826 -0.6 -1.2 Hydrolase, isochorismatase family compare
PP_3020 -0.6 -2.1 putative Serine/threonine protein phosphatase compare
PP_1344 -0.6 -0.9 conserved protein of unknown function compare
PP_0082 -0.6 -1.9 tryptophan synthase alpha chain compare
PP_3258 -0.6 -2.0 conserved protein of unknown function compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source Vanillic Acid in Pseudomonas putida KT2440

For carbon source Vanillic Acid across organisms