Experiment set6IT062 for Pseudomonas putida KT2440

Compare to:

4-Hydroxybenzoic Acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_3952 -5.8 -9.8 3-oxoadipate CoA-transferase subunit A conserved
PP_3951 -5.8 -7.9 3-oxoadipate CoA-transferase subunit A compare
PP_1377 -4.8 -8.6 beta-ketoadipyl-CoA thiolase conserved
PP_4724 -4.7 -7.2 Carbamoyl-phosphate synthase small chain compare
PP_0691 -4.5 -5.3 Glutamate 5-kinase compare
PP_2371 -4.4 -6.0 Sulphite reductase hemoprotein, beta subunit compare
PP_1379 -4.4 -9.3 3-carboxy-cis,cis-muconate cycloisomerase conserved
PP_3999 -4.0 -6.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0164 -3.7 -10.7 conserved protein of unknown function compare
PP_4723 -3.7 -14.6 Carbamoyl-phosphate synthase large chain compare
PP_4909 -3.7 -9.4 phosphoserine phosphatase compare
PP_4999 -3.6 -2.4 dihydroorotase-like protein compare
PP_5095 -3.5 -2.3 pyrroline-5-carboxylate reductase compare
PP_2370 -3.3 -3.2 conserved protein of unknown function compare
PP_1380 -3.1 -7.7 3-oxoadipate enol-lactonase 2 conserved
PP_5155 -3.0 -6.3 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2328 -3.0 -7.3 Phosphoadenosine phosphosulfate reductase compare
PP_1381 -2.8 -2.3 4-carboxymuconolactone decarboxylase compare
PP_2000 -2.7 -3.6 amidophosphoribosyl transferase compare
PP_1654 -2.6 -4.7 cysteine synthase B compare
PP_2327 -2.4 -6.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4696 -2.0 -3.5 Nitrogen regulation protein NR(I) compare
PP_0001 -2.0 -1.8 probable chromosome-partitioning protein compare
PP_0289 -1.9 -8.6 Imidazoleglycerol-phosphate dehydratase compare
PP_4126 -1.9 -2.3 NADH-quinone oxidoreductase subunit I compare
PP_0339 -1.8 -5.7 Pyruvate dehydrogenase E1 component compare
PP_1713 -1.8 -3.7 Transcriptional regulator PcaQ compare
PP_0293 -1.8 -2.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4656 -1.7 -8.2 protocatechuate 3,4-dioxygenase beta chain conserved
PP_0184 -1.7 -5.3 Argininosuccinate lyase compare
PP_0292 -1.6 -4.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5216 -1.6 -1.8 exopolyphosphatase compare
PP_1664 -1.6 -4.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_4004 -1.6 -3.1 DNA translocase FtsK compare
PP_0290 -1.6 -5.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1088 -1.5 -8.0 Argininosuccinate synthase compare
PP_4699 -1.5 -3.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0967 -1.5 -8.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0291 -1.5 -3.8 conserved protein of unknown function compare
PP_1994 -1.5 -2.5 tRNA pseudouridine (38-40)synthase compare
PP_0735 -1.5 -2.0 molybdopterin-synthase adenylyltransferase compare
PP_5014 -1.5 -3.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_1216 -1.4 -1.8 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1215 -1.4 -1.1 Crossover junction endodeoxyribonuclease RuvC compare
PP_5331 -1.4 -4.3 Long-chain acyl-CoA thioester hydrolase compare
PP_3105 -1.4 -3.2 conserved membrane protein of unknown function compare
PP_0965 -1.3 -8.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_3537 -1.3 -7.0 p-hydroxybenzoate hydroxylase conserved
PP_1237 -1.3 -1.5 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4340 -1.3 -4.1 response regulator for chemotactic signal transduction compare
PP_1375 -1.3 -8.3 transcription regulatory protein (pca regulon) conserved
PP_1378 -1.3 -4.8 alpha-ketoglutarate permease compare
PP_5289 -1.3 -2.6 Acetylglutamate kinase compare
PP_5104 -1.3 -6.2 thiazole synthase compare
PP_1468 -1.2 -1.5 Tyrosine recombinase XerD compare
PP_5303 -1.2 -4.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1233 -1.2 -4.7 sulfurtransferase compare
PP_4655 -1.2 -6.1 protocatechuate 3,4-dioxygenase alpha chain conserved
PP_4680 -1.2 -8.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_t10 -1.2 -2.3 tRNA-Pro compare
PP_4122 -1.2 -1.7 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0966 -1.2 -7.1 Histidinol dehydrogenase compare
PP_1079 -1.2 -4.5 Ornithine carbamoyltransferase compare
PP_2356 -1.1 -7.3 putative Phytochrome family protein compare
PP_0366 -1.1 -5.5 dethiobiotin synthetase compare
PP_2336 -1.1 -2.4 aconitate hydratase 1 compare
PP_3511 -1.1 -5.6 Branched-chain-amino-acid aminotransferase compare
PP_4678 -1.1 -7.1 Ketol-acid reductoisomerase compare
PP_3538 -1.1 -6.3 transcriptional regulator conserved
PP_2160 -1.1 -2.7 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_5185 -1.0 -4.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5015 -1.0 -2.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0362 -1.0 -6.7 Biotin synthase compare
PP_5001 -1.0 -2.9 protease HslVU, ATPase component compare
PP_2354 -1.0 -6.3 Sensory box histidine kinase/response regulator compare
PP_5471 -1.0 -2.0 putative response regulator receiver protein compare
PP_0393 -1.0 -0.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1609 -1.0 -2.2 conserved protein of unknown function compare
PP_5028 -1.0 -2.2 proline iminopeptidase compare
PP_1142 -0.9 -1.3 conserved protein of unknown function compare
PP_4890 -0.9 -3.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_4364 -0.9 -3.3 putative Anti-sigma F factor antagonist compare
PP_4338 -0.9 -4.8 Chemotaxis histidine kinase CheA compare
PP_1208 -0.9 -2.0 conserved protein of unknown function, SlyX family compare
PP_5426 -0.9 -4.1 conserved protein of unknown function compare
PP_5128 -0.9 -5.1 Dihydroxy-acid dehydratase compare
PP_0364 -0.9 -5.2 pimeloyl-[acp] methyl ester esterase compare
PP_0365 -0.9 -5.8 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0363 -0.9 -5.8 8-amino-7-oxononanoate synthase compare
PP_4993 -0.9 -2.1 Glutathione synthetase compare
PP_2740 -0.9 -2.1 Transcriptional regulator, MerR family compare
PP_4379 -0.9 -4.1 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0789 -0.9 -3.5 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_5604 -0.8 -2.0 putative subtilisin-like serine protease compare
PP_4707 -0.8 -2.2 OsmY-related protein compare
PP_1986 -0.8 -1.9 3-isopropylmalate dehydratase small subunit compare
PP_2032 -0.8 -3.2 putative ATPase compare
PP_1025 -0.8 -5.7 2-isopropylmalate synthase compare
PP_4480 -0.8 -5.2 arginine N-succinyltransferase, subunit alpha compare
PP_4997 -0.8 -2.2 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_5329 -0.8 -3.2 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2631 -0.8 -1.9 putative cellulose biosynthesis, BcsF/YhjT compare
PP_4121 -0.8 -2.8 NADH-quinone oxidoreductase subunit C/D compare
PP_5748 -0.8 -1.6 cytochrome c heme lyase subunit compare
PP_2929 -0.8 -4.2 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_5352 -0.8 -5.0 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_1763 -0.8 -2.1 putative oxidoreductase compare
PP_4067 -0.8 -4.0 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_5328 -0.8 -3.1 putative phosphate transport system permease protein compare
PP_2633 -0.8 -1.7 conserved protein of unknown function compare
PP_3908 -0.8 -2.0 conserved protein of unknown function compare
PP_1985 -0.8 -2.6 3-isopropylmalate dehydratase large subunit compare
PP_1764 -0.8 -4.1 Phosphoglycolate phosphatase 2 compare
PP_2152 -0.8 -2.3 glycerophosphoryl diester phosphodiesterase compare
PP_4874 -0.8 -0.7 50S ribosomal protein L9 compare
PP_1988 -0.8 -4.3 3-isopropylmalate dehydrogenase compare
PP_2615 -0.8 -1.9 hemolysin-coregulated protein compare
PP_5017 -0.8 -1.1 Sec-independent protein translocase protein TatB compare
PP_0484 -0.8 -3.4 transporter of an unknown substrate compare
PP_4481 -0.7 -4.3 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_4268 -0.7 -0.8 nucleoid-associated broad specificity regulator compare
PP_4984 -0.7 -4.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_2720 -0.7 -1.1 conserved protein of unknown function compare
PP_4835 -0.7 -2.2 conserved exported protein of unknown function compare
PP_5313 -0.7 -1.1 DNA-binding protein HU-alpha compare
PP_3077 -0.7 -3.8 putative ABC transporter permease protein compare
PP_4989 -0.7 -2.0 Protein PilJ compare
PP_0152 -0.7 -1.8 conserved exported protein of unknown function compare
PP_4961 -0.7 -0.9 putative Lipoprotein compare
PP_4066 -0.7 -2.2 methylglutaconyl-CoA hydratase compare
PP_5075 -0.7 -5.2 glutamate synthase (NADPH) beta subunit compare
PP_5236 -0.7 -4.4 conserved protein of unknown function compare
PP_4695 -0.7 -4.6 Sensory box histidine kinase compare
PP_4679 -0.7 -2.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4477 -0.7 -3.5 N-succinylarginine dihydrolase compare
PP_1629 -0.7 -2.6 Protein RecA compare
PP_0834 -0.7 -0.9 Sec translocation complex subunit YajC compare
PP_2417 -0.7 -1.5 putative Iron ABC transporter, permease protein compare
PP_4392 -0.7 -3.7 chemotaxis protein methyltransferase compare
PP_3833 -0.7 -3.0 Response regulator compare
PP_3455 -0.7 -2.8 Multidrug efflux RND membrane fusion protein compare
PP_3685 -0.7 -3.0 conserved protein of unknown function compare
PP_4129 -0.7 -1.7 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_2499 -0.7 -1.3 conserved protein of unknown function compare
PP_1493 -0.6 -2.4 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_3541 -0.6 -1.6 Transporter, MgtC family compare
PP_5327 -0.6 -3.8 putative phosphate ABC transporter, permease subunit compare
PP_3576 -0.6 -3.0 putative Transmembrane sensor compare
PP_3081 -0.6 -1.9 conserved protein of unknown function compare
PP_1568 -0.6 -1.1 conserved protein of unknown function compare
PP_4917 -0.6 -2.0 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_2575 -0.6 -1.4 conserved exported protein of unknown function compare
PP_5085 -0.6 -3.0 malic enzyme B compare
PP_3508 -0.6 -2.2 Protein CobW compare
PP_3902 -0.6 -1.5 conserved protein of unknown function compare
PP_5093 -0.6 -0.6 twitching motility protein compare
PP_4328 -0.6 -2.5 conserved protein of unknown function compare
PP_2291 -0.6 -1.8 conserved protein of unknown function compare
PP_5274 -0.6 -1.1 conserved protein of unknown function compare
PP_0425 -0.6 -2.3 conserved protein of unknown function compare
PP_4701 -0.6 -0.8 glucose-6-phosphate isomerase compare
PP_2031 -0.6 -1.3 conserved protein of unknown function compare
PP_1589 -0.6 -3.3 uridylyltransferase compare
PP_1074 -0.6 -2.2 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_4824 -0.6 -2.3 Sensor histidine kinase/response regulator compare
PP_1553 -0.6 -1.2 conserved protein of unknown function compare
PP_5076 -0.6 -5.0 L-glutamate synthase(NADPH) alpha subunit compare
PP_0833 -0.6 -0.5 queuine tRNA-ribosyltransferase compare
PP_4065 -0.6 -3.6 methylcrotonyl-CoA carboxylase biotin-containing subunit beta compare
PP_1878 -0.6 -3.4 conserved protein of unknown function compare
PP_3555 -0.6 -3.1 putative Transmembrane sensor compare
PP_4130 -0.6 -1.8 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1304 -0.6 -4.0 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2379 -0.6 -2.5 putative cytochrome oxidase biogenesis protein compare
PP_1673 -0.6 -2.8 cobyrinate a,c-diamide synthase compare
PP_0405 -0.6 -4.9 conserved protein of unknown function compare
PP_4212 -0.6 -1.6 pyoverdine biosynthesis related protein compare
PP_1729 -0.6 -1.1 conserved protein of unknown function compare
PP_5008 -0.6 -1.2 Poly granule-associated protein compare
PP_5230 -0.6 -1.5 Tyrosine recombinase XerC compare
PP_1078 -0.6 -3.0 putative ABC transporter, ATP-binding protein compare
PP_1355 -0.6 -5.0 Muropeptide permease AmpG compare
PP_4627 -0.6 -2.6 transcriptional regulator, LysR family compare
PP_0406 -0.6 -3.1 Nucleotidyltransferase family protein compare
PP_1293 -0.6 -0.6 molybdopterin synthase small subunit compare
PP_1097 -0.6 -0.8 Methionine--tRNA ligase compare
PP_0888 -0.6 -1.0 Photosynthetic apparatus regulatory protein RegA compare
PP_2145 -0.6 -3.2 beta-N-acetylglucosaminidase compare
PP_5100 -0.6 -0.8 dITP/XTP pyrophosphatase compare
PP_2804 -0.5 -2.4 Hydrolase, alpha/beta fold family compare
PP_4317 -0.5 -1.5 conserved protein of unknown function compare
PP_1734 -0.5 -1.2 Probable septum site-determining protein MinC compare
PP_5168 -0.5 -1.4 sulfate/thiosulfate import ATP-binding protein compare
PP_5516 -0.5 -2.9 protein of unknown function compare
PP_3806 -0.5 -1.6 Hydrolase, isochorismatase family compare
PP_0313 -0.5 -1.6 putative electron transfer flavoprotein beta subunit compare
PP_4013 -0.5 -2.0 MutT/nudix family protein compare
PP_4196 -0.5 -1.9 conserved exported protein of unknown function compare
PP_5558 -0.5 -1.5 putative transcriptional xre family of phage origin compare
PP_2806 -0.5 -2.5 Transcriptional regulator, TetR family compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source 4-Hydroxybenzoic Acid in Pseudomonas putida KT2440

For carbon source 4-Hydroxybenzoic Acid across organisms