Experiment set6IT061 for Pseudomonas putida KT2440

Compare to:

benzoic acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_0691 -5.5 -3.8 Glutamate 5-kinase compare
PP_0293 -5.3 -4.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3951 -5.1 -9.1 3-oxoadipate CoA-transferase subunit A compare
PP_3952 -5.0 -11.7 3-oxoadipate CoA-transferase subunit A compare
PP_4909 -5.0 -8.9 phosphoserine phosphatase compare
PP_0164 -4.9 -9.3 conserved protein of unknown function compare
PP_2371 -4.8 -6.6 Sulphite reductase hemoprotein, beta subunit compare
PP_1654 -4.7 -3.2 cysteine synthase B compare
PP_4723 -4.6 -14.2 Carbamoyl-phosphate synthase large chain compare
PP_4724 -4.5 -8.1 Carbamoyl-phosphate synthase small chain compare
PP_1375 -4.4 -16.3 transcription regulatory protein (pca regulon) compare
PP_1380 -4.3 -7.8 3-oxoadipate enol-lactonase 2 compare
PP_5155 -4.1 -7.3 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0290 -4.1 -9.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1377 -4.0 -8.4 beta-ketoadipyl-CoA thiolase compare
PP_3999 -3.9 -7.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4937 -3.9 -5.3 toluene tolerance protein compare
PP_4890 -3.8 -8.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_3164 -3.8 -5.7 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_2327 -3.5 -8.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5095 -3.4 -2.3 pyrroline-5-carboxylate reductase compare
PP_2328 -3.3 -7.8 Phosphoadenosine phosphosulfate reductase compare
PP_0289 -3.2 -11.1 Imidazoleglycerol-phosphate dehydratase compare
PP_3715 -3.0 -4.9 Muconate cycloisomerase 1 compare
PP_5015 -3.0 -6.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0967 -2.9 -12.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0292 -2.8 -4.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_3716 -2.8 -8.1 HTH-type transcriptional regulator compare
PP_3714 -2.8 -7.0 Muconolactone Delta-isomerase compare
PP_1088 -2.8 -11.3 Argininosuccinate synthase compare
PP_2370 -2.8 -5.7 conserved protein of unknown function compare
PP_5014 -2.8 -5.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_2000 -2.7 -4.1 amidophosphoribosyl transferase compare
PP_0966 -2.6 -11.7 Histidinol dehydrogenase compare
PP_4126 -2.5 -3.3 NADH-quinone oxidoreductase subunit I compare
PP_4999 -2.5 -2.4 dihydroorotase-like protein compare
PP_0965 -2.5 -9.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0184 -2.4 -6.2 Argininosuccinate lyase compare
PP_5289 -2.3 -4.8 Acetylglutamate kinase compare
PP_5185 -2.2 -5.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1231 -2.2 -5.2 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4122 -2.1 -2.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4364 -2.0 -6.6 putative Anti-sigma F factor antagonist compare
PP_3511 -2.0 -8.9 Branched-chain-amino-acid aminotransferase compare
PP_0735 -2.0 -3.0 molybdopterin-synthase adenylyltransferase compare
PP_0291 -2.0 -3.3 conserved protein of unknown function compare
PP_0127 -2.0 -4.3 Thiol:disulfide interchange protein compare
PP_4917 -1.9 -4.3 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_0339 -1.9 -6.1 Pyruvate dehydrogenase E1 component compare
PP_4120 -1.9 -4.0 NADH-quinone oxidoreductase subunit B compare
PP_2354 -1.9 -8.5 Sensory box histidine kinase/response regulator compare
PP_4680 -1.9 -12.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1985 -1.8 -5.2 3-isopropylmalate dehydratase large subunit compare
PP_4678 -1.8 -11.2 Ketol-acid reductoisomerase compare
PP_2336 -1.8 -2.9 aconitate hydratase 1 compare
PP_4943 -1.8 -1.7 putative Glycosyl transferase compare
PP_1493 -1.8 -3.6 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0787 -1.7 -4.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1994 -1.7 -2.7 tRNA pseudouridine (38-40)synthase compare
PP_5104 -1.7 -9.3 thiazole synthase compare
PP_1986 -1.7 -3.4 3-isopropylmalate dehydratase small subunit compare
PP_1233 -1.7 -5.9 sulfurtransferase compare
PP_2402 -1.7 -2.6 putative Sensor histidine kinase compare
PP_3105 -1.7 -2.1 conserved membrane protein of unknown function compare
PP_2356 -1.7 -10.4 putative Phytochrome family protein compare
PP_4699 -1.7 -3.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1664 -1.7 -5.4 phosphoribosylglycinamide formyltransferase 1 compare
PP_4679 -1.6 -6.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1079 -1.6 -5.5 Ornithine carbamoyltransferase compare
PP_0346 -1.6 -10.4 putative Heptose kinase WapQ compare
PP_4782 -1.5 -5.3 Phosphomethylpyrimidine kinase compare
PP_5350 -1.5 -2.8 Transcriptional regulator, RpiR family compare
PP_4944 -1.5 -5.6 Carbamoyltransferase compare
PP_4124 -1.5 -3.4 NADH-quinone oxidoreductase subunit G compare
PP_5128 -1.5 -7.5 Dihydroxy-acid dehydratase compare
PP_3493 -1.5 -7.8 Transcriptional regulator, LysR family compare
PP_1378 -1.5 -5.4 alpha-ketoglutarate permease compare
PP_1988 -1.5 -8.0 3-isopropylmalate dehydrogenase compare
PP_0345 -1.4 -5.4 putative Heptose kinase WapP compare
PP_3409 -1.4 -2.6 putative Cobalamin biosynthesis protein cobE compare
PP_4993 -1.4 -2.9 Glutathione synthetase compare
PP_1216 -1.4 -1.8 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0809 -1.4 -8.0 disulfide bond formation protein B compare
PP_4941 -1.4 -7.3 conserved exported protein of unknown function compare
PP_2433 -1.4 -2.9 conserved protein of unknown function compare
PP_3903 -1.4 -2.2 conserved protein of unknown function compare
PP_4342 -1.3 -3.2 flagellar synthesis regulator, putative ATPase compare
PP_1468 -1.3 -1.3 Tyrosine recombinase XerD compare
PP_1734 -1.3 -2.3 Probable septum site-determining protein MinC compare
PP_4517 -1.3 -2.1 conserved protein of unknown function compare
PP_1426 -1.3 -9.1 L-aspartate oxidase compare
PP_4696 -1.3 -3.1 Nitrogen regulation protein NR(I) compare
PP_5329 -1.2 -3.7 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4121 -1.2 -3.8 NADH-quinone oxidoreductase subunit C/D compare
PP_1025 -1.2 -7.7 2-isopropylmalate synthase compare
PP_4131 -1.2 -4.3 NADH-quinone oxidoreductase subunit N compare
PP_0393 -1.2 -0.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0901 -1.1 -6.4 DNA-binding response regulator compare
PP_1348 -1.1 -5.9 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_2337 -1.1 -1.8 aconitate isomerase compare
PP_0082 -1.1 -3.5 tryptophan synthase alpha chain compare
PP_5230 -1.1 -2.6 Tyrosine recombinase XerC compare
PP_4895 -1.1 -2.4 tRNA dimethylallyltransferase compare
PP_2414 -1.1 -1.2 conserved exported protein of unknown function compare
PP_5528 -1.1 -2.0 conserved protein of unknown function compare
PP_2341 -1.1 -2.0 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_5533 -1.1 -1.6 conserved protein of unknown function compare
PP_5098 -1.1 -4.7 methionine biosynthesis protein MetW compare
PP_4546 -1.1 -2.3 ATP-dependent helicase HrpA compare
PP_0902 -1.1 -6.1 integral membrane sensor signal transduction histidine kinase compare
PP_0362 -1.1 -7.5 Biotin synthase compare
PP_3713 -1.0 -5.4 Catechol 1,2-dioxygenase (EC 1.13.11.1) (from data) compare
PP_4481 -1.0 -4.8 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_4199 -1.0 -1.6 putative Lipoprotein compare
PP_3162 -1.0 -4.5 benzoate 1,2-dioxygenase subunit beta compare
PP_3166 -1.0 -5.6 catechol 1,2-dioxygenase compare
PP_5097 -1.0 -7.5 homoserine O-acetyltransferase compare
PP_0313 -1.0 -2.9 putative electron transfer flavoprotein beta subunit compare
PP_1214 -1.0 -2.2 putative transcriptional regulatory protein compare
PP_0363 -1.0 -6.9 8-amino-7-oxononanoate synthase compare
PP_2001 -1.0 -6.4 O-succinylhomoserine sulfhydrylase compare
PP_3930 -1.0 -2.6 conserved exported protein of unknown function compare
PP_t13 -1.0 -2.3 tRNA-Lys compare
PP_1826 -1.0 -2.3 Hydrolase, isochorismatase family compare
PP_1673 -1.0 -4.3 cobyrinate a,c-diamide synthase compare
PP_5327 -1.0 -4.2 putative phosphate ABC transporter, permease subunit compare
PP_2032 -1.0 -3.5 putative ATPase compare
PP_4004 -1.0 -2.6 DNA translocase FtsK compare
PP_0365 -1.0 -5.6 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_2031 -1.0 -1.8 conserved protein of unknown function compare
PP_1629 -1.0 -3.5 Protein RecA compare
PP_4268 -0.9 -1.4 nucleoid-associated broad specificity regulator compare
PP_2740 -0.9 -2.2 Transcriptional regulator, MerR family compare
PP_0401 -0.9 -2.9 Ribosomal RNA small subunit methyltransferase A compare
PP_1198 -0.9 -3.4 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_3245 -0.9 -1.9 conserved protein of unknown function compare
PP_4379 -0.9 -4.4 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_2929 -0.9 -5.2 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_3102 -0.9 -3.3 conserved protein of unknown function compare
PP_4129 -0.9 -2.2 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4942 -0.9 -1.2 conserved protein of unknown function compare
PP_5359 -0.9 -1.8 CobW/P47K family protein compare
PP_5075 -0.9 -6.3 glutamate synthase (NADPH) beta subunit compare
PP_2030 -0.9 -2.9 conserved protein of unknown function compare
PP_5328 -0.9 -2.7 putative phosphate transport system permease protein compare
PP_1379 -0.9 -2.6 3-carboxy-cis,cis-muconate cycloisomerase compare
PP_3165 -0.9 -4.6 benzoate MFS transporter compare
PP_4830 -0.8 -4.1 precorrin-6Y C(5,15)-methyltransferase compare
PP_0366 -0.8 -4.6 dethiobiotin synthetase compare
PP_0846 -0.8 -1.3 DnaK-like molecular chaperone specific for IscU compare
PP_4130 -0.8 -2.3 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0065 -0.8 -1.8 NAD-binding component of TrK potassium transporter compare
PP_1076 -0.8 -3.1 aquaglyceroporin compare
PP_1995 -0.8 -4.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1906 -0.8 -2.9 ribosomal large subunit pseudouridine synthase C compare
PP_3505 -0.8 -1.9 conserved protein of unknown function compare
PP_0368 -0.8 -5.1 putative Acyl-CoA dehydrogenase compare
PP_2677 -0.8 -3.0 conserved exported protein of unknown function compare
PP_2029 -0.8 -1.7 von Willebrand factor type A domain protein compare
PP_4515 -0.8 -3.3 Transcriptional regulator, MarR family compare
PP_2622 -0.8 -2.0 conserved protein of unknown function compare
PP_3603 -0.8 -4.0 Transcriptional regulator, GntR family compare
PP_4984 -0.8 -4.5 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_4874 -0.8 -0.7 50S ribosomal protein L9 compare
PP_t29 -0.8 -1.3 tRNA-Ala compare
PP_0959 -0.8 -2.2 phospholipid ABC transporter compare
PP_3590 -0.8 -3.7 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_1208 -0.7 -1.5 conserved protein of unknown function, SlyX family compare
PP_0834 -0.7 -1.0 Sec translocation complex subunit YajC compare
PP_0364 -0.7 -4.4 pimeloyl-[acp] methyl ester esterase compare
PP_4392 -0.7 -3.9 chemotaxis protein methyltransferase compare
PP_4799 -0.7 -1.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1672 -0.7 -3.2 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_0848 -0.7 -1.3 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_2309 -0.7 -1.3 conserved protein of unknown function compare
PP_5426 -0.7 -3.4 conserved protein of unknown function compare
PP_3163 -0.7 -4.1 benzoate 1,2-dioxygenase electron transfer component compare
PP_2196 -0.7 -2.0 agmatinase compare
PP_3161 -0.7 -4.9 benzoate 1,2-dioxygenase subunit alpha compare
PP_1778 -0.7 -2.5 Lipopolysaccharide ABC export system, permease protein compare
PP_5571 -0.7 -1.2 conserved protein of unknown function compare
PP_5303 -0.7 -2.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1304 -0.7 -4.9 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_5236 -0.7 -4.3 conserved protein of unknown function compare
PP_4067 -0.7 -3.4 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_3159 -0.7 -3.7 BenABC operon transcriptional activator compare
PP_5445 -0.7 -2.0 conserved protein of unknown function compare
PP_4695 -0.7 -4.1 Sensory box histidine kinase compare
PP_5076 -0.7 -5.4 L-glutamate synthase(NADPH) alpha subunit compare
PP_0610 -0.7 -1.8 conserved exported protein of unknown function compare
PP_0117 -0.7 -2.7 Zn(2+) ABC transporter - permease subunit compare
PP_3507 -0.7 -4.6 Aerobic cobaltochelatase subunit CobN compare
PP_2883 -0.7 -1.0 conserved protein of unknown function compare
PP_3434 -0.6 -1.8 conserved protein of unknown function compare
PP_0420 -0.6 -4.9 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_2214 -0.6 -2.7 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_4824 -0.6 -2.4 Sensor histidine kinase/response regulator compare
PP_4671 -0.6 -2.3 conserved exported protein of unknown function compare
PP_t10 -0.6 -1.8 tRNA-Pro compare
PP_0417 -0.6 -5.2 Anthranilate synthase component 1 compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source benzoic acid in Pseudomonas putida KT2440

For carbon source benzoic acid across organisms