Experiment set6IT060 for Pseudomonas putida KT2440

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p-Coumaric acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_4723 -5.2 -9.4 Carbamoyl-phosphate synthase large chain compare
PP_4724 -5.1 -6.1 Carbamoyl-phosphate synthase small chain compare
PP_0691 -4.6 -4.5 Glutamate 5-kinase compare
PP_2371 -4.4 -6.0 Sulphite reductase hemoprotein, beta subunit compare
PP_1654 -4.3 -3.0 cysteine synthase B compare
PP_0164 -4.2 -9.4 conserved protein of unknown function compare
PP_3999 -3.9 -5.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0290 -3.9 -9.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0289 -3.8 -10.9 Imidazoleglycerol-phosphate dehydratase compare
PP_3951 -3.8 -8.5 3-oxoadipate CoA-transferase subunit A conserved
PP_1377 -3.7 -9.4 beta-ketoadipyl-CoA thiolase conserved
PP_0293 -3.4 -3.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4937 -3.4 -4.6 toluene tolerance protein compare
PP_1379 -3.4 -9.1 3-carboxy-cis,cis-muconate cycloisomerase compare
PP_1381 -3.3 -2.3 4-carboxymuconolactone decarboxylase compare
PP_3952 -3.3 -11.1 3-oxoadipate CoA-transferase subunit A conserved
PP_4909 -3.3 -9.2 phosphoserine phosphatase compare
PP_2370 -3.3 -3.2 conserved protein of unknown function compare
PP_0967 -3.2 -10.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4999 -3.2 -2.2 dihydroorotase-like protein compare
PP_5095 -3.0 -2.1 pyrroline-5-carboxylate reductase compare
PP_2000 -3.0 -3.5 amidophosphoribosyl transferase compare
PP_4268 -3.0 -1.9 nucleoid-associated broad specificity regulator compare
PP_5155 -2.9 -4.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1380 -2.8 -7.6 3-oxoadipate enol-lactonase 2 conserved
PP_3357 -2.8 -7.7 p-hydroxybenzaldehyde dehydrogenase vdh (EC 1.2.1.64) (from data) conserved
PP_1079 -2.7 -6.4 Ornithine carbamoyltransferase compare
PP_1088 -2.7 -9.9 Argininosuccinate synthase compare
PP_1664 -2.7 -5.5 phosphoribosylglycinamide formyltransferase 1 compare
PP_1384 -2.6 -8.2 Probable efflux pump outer membrane protein TtgC compare
PP_2328 -2.6 -7.1 Phosphoadenosine phosphosulfate reductase compare
PP_0966 -2.6 -10.5 Histidinol dehydrogenase compare
PP_1986 -2.5 -4.2 3-isopropylmalate dehydratase small subunit compare
PP_5185 -2.5 -6.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4782 -2.5 -6.0 Phosphomethylpyrimidine kinase compare
PP_2327 -2.5 -6.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4364 -2.4 -6.5 putative Anti-sigma F factor antagonist compare
PP_4678 -2.4 -12.1 Ketol-acid reductoisomerase compare
PP_2356 -2.4 -11.9 putative Phytochrome family protein compare
PP_3105 -2.4 -2.6 conserved membrane protein of unknown function compare
PP_0184 -2.4 -5.7 Argininosuccinate lyase compare
PP_1988 -2.4 -9.7 3-isopropylmalate dehydrogenase compare
PP_1985 -2.4 -5.3 3-isopropylmalate dehydratase large subunit compare
PP_3537 -2.4 -11.3 p-hydroxybenzoate hydroxylase conserved
PP_0846 -2.4 -2.2 DnaK-like molecular chaperone specific for IscU compare
PP_4004 -2.4 -4.1 DNA translocase FtsK compare
PP_5289 -2.3 -4.9 Acetylglutamate kinase compare
PP_3358 -2.3 -4.5 hydroxycinnamoyl-CoA hydratase-lyase (EC 4.1.2.61) (from data) compare
PP_3356 -2.3 -14.2 p-coumarate CoA-ligase (EC 6.2.1.12) (from data) conserved
PP_1385 -2.3 -15.5 Probable efflux pump membrane transporter TtgB compare
PP_0083 -2.3 -5.5 tryptophan synthase beta chain compare
PP_5014 -2.3 -4.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_0346 -2.2 -10.1 putative Heptose kinase WapQ compare
PP_0291 -2.2 -4.1 conserved protein of unknown function compare
PP_4699 -2.2 -3.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2354 -2.2 -9.4 Sensory box histidine kinase/response regulator compare
PP_1713 -2.2 -3.8 Transcriptional regulator PcaQ compare
PP_5015 -2.2 -4.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4656 -2.1 -8.6 protocatechuate 3,4-dioxygenase beta chain compare
PP_4126 -2.1 -2.8 NADH-quinone oxidoreductase subunit I compare
PP_1375 -2.1 -11.5 transcription regulatory protein (pca regulon) compare
PP_3511 -2.1 -9.5 Branched-chain-amino-acid aminotransferase compare
PP_4679 -2.0 -5.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5128 -2.0 -7.7 Dihydroxy-acid dehydratase compare
PP_5104 -2.0 -6.6 thiazole synthase compare
PP_0292 -2.0 -2.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0965 -1.9 -7.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0901 -1.9 -7.3 DNA-binding response regulator compare
PP_3538 -1.9 -9.8 transcriptional regulator conserved
PP_4680 -1.9 -11.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4696 -1.9 -2.8 Nitrogen regulation protein NR(I) compare
PP_0735 -1.9 -2.4 molybdopterin-synthase adenylyltransferase compare
PP_1994 -1.8 -2.7 tRNA pseudouridine (38-40)synthase compare
PP_4655 -1.8 -8.2 protocatechuate 3,4-dioxygenase alpha chain conserved
PP_4124 -1.8 -2.7 NADH-quinone oxidoreductase subunit G compare
PP_2378 -1.8 -3.0 Fe/S biogenesis protein NfuA compare
PP_0339 -1.8 -5.2 Pyruvate dehydrogenase E1 component compare
PP_2388 -1.7 -4.6 Transporter, LysE family compare
PP_1233 -1.7 -4.8 sulfurtransferase compare
PP_0362 -1.7 -10.2 Biotin synthase compare
PP_0127 -1.6 -4.6 Thiol:disulfide interchange protein compare
PP_1386 -1.6 -7.4 Probable efflux pump periplasmic linker TtgA compare
PP_0827 -1.6 -3.0 putative phosphonate transport system permease protein PtxC compare
PP_0809 -1.6 -8.7 disulfide bond formation protein B compare
PP_5028 -1.6 -2.6 proline iminopeptidase compare
PP_4910 -1.6 -1.8 conserved protein of unknown function compare
PP_1995 -1.6 -7.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5007 -1.5 -3.0 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_5329 -1.5 -4.6 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0345 -1.5 -4.4 putative Heptose kinase WapP compare
PP_2214 -1.5 -3.5 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_0366 -1.5 -6.4 dethiobiotin synthetase compare
PP_4120 -1.5 -3.2 NADH-quinone oxidoreductase subunit B compare
PP_2336 -1.4 -2.5 aconitate hydratase 1 compare
PP_1025 -1.4 -8.0 2-isopropylmalate synthase compare
PP_2390 -1.4 -7.2 Transcriptional regulator, LysR family compare
PP_1824 -1.4 -2.1 Smr domain protein compare
PP_5230 -1.4 -2.7 Tyrosine recombinase XerC compare
PP_5303 -1.4 -3.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0082 -1.4 -3.6 tryptophan synthase alpha chain compare
PP_4993 -1.4 -2.4 Glutathione synthetase compare
PP_0363 -1.3 -7.8 8-amino-7-oxononanoate synthase compare
PP_2001 -1.3 -6.3 O-succinylhomoserine sulfhydrylase compare
PP_1348 -1.3 -4.8 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1763 -1.3 -2.9 putative oxidoreductase compare
PP_2029 -1.3 -2.6 von Willebrand factor type A domain protein compare
PP_4890 -1.3 -3.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_4131 -1.3 -3.8 NADH-quinone oxidoreductase subunit N compare
PP_5098 -1.3 -4.9 methionine biosynthesis protein MetW compare
PP_3248 -1.3 -1.8 Dyp-type peroxidase family protein compare
PP_1493 -1.3 -2.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0364 -1.2 -6.1 pimeloyl-[acp] methyl ester esterase compare
PP_5097 -1.2 -7.8 homoserine O-acetyltransferase compare
PP_1562 -1.2 -1.8 putative Phage terminase, small subunit compare
PP_5644 -1.2 -3.4 conserved membrane protein of unknown function compare
PP_0417 -1.2 -9.3 Anthranilate synthase component 1 compare
PP_0365 -1.2 -7.3 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0420 -1.2 -6.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0422 -1.2 -3.8 Indole-3-glycerol phosphate synthase compare
PP_1378 -1.1 -5.4 alpha-ketoglutarate permease compare
PP_1214 -1.1 -2.4 putative transcriptional regulatory protein compare
PP_2217 -1.1 -2.8 enoyl-CoA hydratase compare
PP_0421 -1.1 -5.7 Anthranilate phosphoribosyltransferase compare
PP_0025 -1.1 -1.6 hypothetical protein compare
PP_4121 -1.1 -3.3 NADH-quinone oxidoreductase subunit C/D compare
PP_1150 -1.1 -5.3 putative Membrane protein conserved
PP_2402 -1.1 -1.8 putative Sensor histidine kinase compare
PP_0787 -1.1 -3.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4129 -1.1 -2.4 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_3102 -1.0 -3.5 conserved protein of unknown function compare
PP_0902 -1.0 -5.5 integral membrane sensor signal transduction histidine kinase compare
PP_5168 -1.0 -3.5 sulfate/thiosulfate import ATP-binding protein compare
PP_1589 -1.0 -5.9 uridylyltransferase compare
PP_4799 -1.0 -2.2 putative Muramoyltetrapeptide carboxypeptidase compare
PP_3359 -1.0 -2.2 putative Hydroxycinnamic acid degradation regulator compare
PP_3590 -1.0 -5.2 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_4984 -1.0 -6.0 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_4989 -1.0 -2.2 Protein PilJ compare
PP_3766 -1.0 -2.9 Lactoylglutathione lyase compare
PP_1468 -1.0 -1.3 Tyrosine recombinase XerD compare
PP_1051 -1.0 -2.8 Type II secretion pathway protein XcpV compare
PP_1151 -0.9 -3.9 conserved protein of unknown function compare
PP_0022 -0.9 -1.1 hypothetical protein compare
PP_1008 -0.9 -2.6 RNA polymerase subunit sigma-24 compare
PP_2087 -0.9 -1.7 CmpX protein compare
PP_3378 -0.9 -1.9 putative 2-ketogluconokinase compare
PP_5198 -0.9 -2.1 conserved protein of unknown function compare
PP_4379 -0.9 -4.5 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0989 -0.9 -2.5 glycine cleavage system H protein 1 compare
PP_0834 -0.9 -0.9 Sec translocation complex subunit YajC compare
PP_1441 -0.9 -2.5 tRNA (cmo5U34)-methyltransferase compare
PP_4828 -0.9 -0.5 Precorrin-8X methylmutase compare
PP_2031 -0.9 -1.8 conserved protein of unknown function compare
PP_2903 -0.9 -2.2 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4066 -0.9 -2.9 methylglutaconyl-CoA hydratase compare
PP_1226 -0.9 -3.2 pre-queuosine 0 synthase compare
PP_4340 -0.9 -2.3 response regulator for chemotactic signal transduction compare
PP_1109 -0.8 -6.8 Transcriptional regulator, GntR family compare
PP_1152 -0.8 -4.0 putative membrane fusion efflux protein compare
PP_1304 -0.8 -5.6 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4808 -0.8 -2.1 23S rRNA m3psi1915 methyltransferase compare
PP_4546 -0.8 -1.7 ATP-dependent helicase HrpA compare
PP_4504 -0.8 -1.7 conserved exported protein of unknown function compare
PP_4917 -0.8 -2.3 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_5717 -0.8 -1.4 conserved protein of unknown function compare
PP_5035 -0.8 -3.9 Histidine utilization repressor compare
PP_4067 -0.8 -5.4 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_1099 -0.8 -1.4 Cold shock protein CapB compare
PP_2403 -0.8 -1.1 Chemotaxis protein CheY compare
PP_3938 -0.8 -2.0 conserved protein of unknown function compare
PP_3519 -0.8 -1.0 putative Lipoprotein compare
PP_5426 -0.8 -3.4 conserved protein of unknown function compare
PP_0428 -0.8 -4.4 aminoacyl-adenylate hydrolase/purine nucleoside phosphoramidase compare
PP_5313 -0.8 -1.6 DNA-binding protein HU-alpha compare
PP_t10 -0.8 -1.0 tRNA-Pro compare
PP_4130 -0.8 -2.0 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_5328 -0.8 -2.9 putative phosphate transport system permease protein compare
PP_0833 -0.8 -0.5 queuine tRNA-ribosyltransferase compare
PP_4739 -0.8 -2.4 conserved protein of unknown function compare
PP_0406 -0.8 -3.0 Nucleotidyltransferase family protein compare
PP_0683 -0.8 -1.9 conserved protein of unknown function compare
PP_5229 -0.8 -2.2 conserved protein of unknown function compare
PP_4591 -0.8 -2.2 Ribonuclease D compare
PP_1303 -0.7 -4.1 Sulfate adenylyltransferase subunit 2 compare
PP_5216 -0.7 -1.0 exopolyphosphatase compare
PP_3484 -0.7 -1.6 Response regulator receiver protein compare
PP_1207 -0.7 -2.6 conserved protein of unknown function compare
PP_2044 -0.7 -1.3 conserved inner membrane protein of unknown function compare
PP_1208 -0.7 -1.3 conserved protein of unknown function, SlyX family compare
PP_2153 -0.7 -1.9 conserved protein of unknown function compare
PP_4880 -0.7 -3.6 exoribonuclease R compare
PP_3035 -0.7 -1.4 conserved protein of unknown function compare
PP_2324 -0.7 -3.9 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_0878 -0.7 -3.7 dipeptide ABC transporter, binding subunit compare
PP_3946 -0.7 -1.0 HTH-type transcriptional repressor NicR compare
PP_4681 -0.7 -1.9 conserved protein of unknown function compare
PP_0757 -0.7 -3.0 conserved protein of unknown function compare
PP_4695 -0.7 -4.0 Sensory box histidine kinase compare
PP_1813 -0.7 -1.7 ComEA-related protein compare
PP_0119 -0.7 -1.7 putative zinc uptake regulation protein ZUR compare


Specific Phenotypes

For 16 genes in this experiment

For carbon source p-Coumaric acid in Pseudomonas putida KT2440

For carbon source p-Coumaric acid across organisms