Experiment set6IT059 for Pseudomonas putida KT2440

Compare to:

Ferulic Acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_4724 -5.0 -4.9 Carbamoyl-phosphate synthase small chain compare
PP_2433 -4.9 -4.7 conserved protein of unknown function compare
PP_4723 -4.7 -9.1 Carbamoyl-phosphate synthase large chain compare
PP_0691 -4.7 -3.2 Glutamate 5-kinase compare
PP_3952 -4.5 -10.0 3-oxoadipate CoA-transferase subunit A conserved
PP_0293 -4.4 -4.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2371 -4.2 -4.9 Sulphite reductase hemoprotein, beta subunit compare
PP_1377 -4.0 -8.1 beta-ketoadipyl-CoA thiolase conserved
PP_5155 -4.0 -5.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1654 -3.9 -2.7 cysteine synthase B compare
PP_4909 -3.8 -7.3 phosphoserine phosphatase compare
PP_0184 -3.8 -2.6 Argininosuccinate lyase compare
PP_0346 -3.7 -9.6 putative Heptose kinase WapQ compare
PP_0290 -3.7 -9.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4364 -3.6 -5.0 putative Anti-sigma F factor antagonist compare
PP_3999 -3.6 -3.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1988 -3.6 -10.0 3-isopropylmalate dehydrogenase compare
PP_0289 -3.6 -9.7 Imidazoleglycerol-phosphate dehydratase compare
PP_1152 -3.5 -11.1 putative membrane fusion efflux protein compare
PP_4782 -3.4 -5.7 Phosphomethylpyrimidine kinase compare
PP_4937 -3.4 -3.3 toluene tolerance protein compare
PP_2163 -3.4 -8.2 VacJ lipoprotein compare
PP_2370 -3.4 -3.8 conserved protein of unknown function compare
PP_0127 -3.3 -5.0 Thiol:disulfide interchange protein compare
PP_3511 -3.3 -8.5 Branched-chain-amino-acid aminotransferase compare
PP_0966 -3.2 -11.0 Histidinol dehydrogenase compare
PP_5014 -3.2 -4.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_0291 -3.2 -4.7 conserved protein of unknown function compare
PP_0164 -3.2 -8.1 conserved protein of unknown function compare
PP_1088 -3.1 -9.0 Argininosuccinate synthase compare
PP_0967 -3.1 -8.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4890 -3.1 -6.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_1381 -3.0 -2.1 4-carboxymuconolactone decarboxylase compare
PP_0846 -3.0 -2.0 DnaK-like molecular chaperone specific for IscU compare
PP_3951 -2.9 -6.9 3-oxoadipate CoA-transferase subunit A compare
PP_0965 -2.9 -11.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5289 -2.9 -4.5 Acetylglutamate kinase compare
PP_5128 -2.9 -9.4 Dihydroxy-acid dehydratase compare
PP_0961 -2.9 -9.3 toluene tolerance protein compare
PP_4680 -2.8 -13.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2414 -2.8 -2.7 conserved exported protein of unknown function compare
PP_0960 -2.8 -6.5 phospholipid ABC transporter binding protein compare
PP_2328 -2.8 -6.4 Phosphoadenosine phosphosulfate reductase compare
PP_0959 -2.8 -3.8 phospholipid ABC transporter compare
PP_3946 -2.8 -1.9 HTH-type transcriptional repressor NicR compare
PP_4678 -2.7 -13.4 Ketol-acid reductoisomerase compare
PP_5015 -2.7 -4.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4999 -2.7 -1.8 dihydroorotase-like protein compare
PP_5185 -2.7 -6.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1985 -2.6 -6.1 3-isopropylmalate dehydratase large subunit compare
PP_1151 -2.6 -5.3 conserved protein of unknown function compare
PP_1150 -2.6 -9.3 putative Membrane protein compare
PP_4679 -2.6 -6.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5095 -2.6 -1.7 pyrroline-5-carboxylate reductase compare
PP_5104 -2.5 -8.9 thiazole synthase compare
PP_2000 -2.5 -3.0 amidophosphoribosyl transferase compare
PP_5098 -2.5 -8.1 methionine biosynthesis protein MetW compare
PP_1233 -2.5 -6.4 sulfurtransferase compare
PP_4656 -2.5 -8.2 protocatechuate 3,4-dioxygenase beta chain compare
PP_2356 -2.5 -11.0 putative Phytochrome family protein compare
PP_4122 -2.4 -1.7 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0880 -2.4 -3.5 dipeptide ABC transporter - putative membrane subunit compare
PP_1380 -2.4 -6.4 3-oxoadipate enol-lactonase 2 conserved
PP_1826 -2.4 -2.8 Hydrolase, isochorismatase family compare
PP_0292 -2.4 -2.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0809 -2.3 -10.1 disulfide bond formation protein B compare
PP_2354 -2.3 -9.4 Sensory box histidine kinase/response regulator compare
PP_1986 -2.3 -4.0 3-isopropylmalate dehydratase small subunit compare
PP_0083 -2.2 -4.8 tryptophan synthase beta chain compare
PP_0422 -2.2 -6.2 Indole-3-glycerol phosphate synthase compare
PP_0888 -2.2 -2.1 Photosynthetic apparatus regulatory protein RegA compare
PP_1384 -2.2 -7.5 Probable efflux pump outer membrane protein TtgC compare
PP_2327 -2.2 -5.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1468 -2.2 -2.9 Tyrosine recombinase XerD compare
PP_0082 -2.1 -4.0 tryptophan synthase alpha chain compare
PP_1379 -2.1 -7.0 3-carboxy-cis,cis-muconate cycloisomerase compare
PP_3736 -2.1 -9.8 vanillate O-demethylase oxygenase subunit conserved
PP_0958 -2.1 -6.1 phospholipid ABC transporter ATP-binding subunit compare
PP_3737 -2.1 -9.1 vanillate O-demethylase oxidoreductase conserved
PP_1493 -2.1 -2.6 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5097 -2.1 -10.5 homoserine O-acetyltransferase compare
PP_1214 -2.1 -2.8 putative transcriptional regulatory protein compare
PP_0834 -2.0 -2.1 Sec translocation complex subunit YajC compare
PP_2402 -1.9 -2.5 putative Sensor histidine kinase compare
PP_1995 -1.9 -7.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0420 -1.9 -9.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0735 -1.9 -2.6 molybdopterin-synthase adenylyltransferase compare
PP_0962 -1.8 -3.4 toluene-tolerance protein compare
PP_1385 -1.8 -11.7 Probable efflux pump membrane transporter TtgB compare
PP_4655 -1.8 -7.4 protocatechuate 3,4-dioxygenase alpha chain conserved
PP_0421 -1.8 -6.4 Anthranilate phosphoribosyltransferase compare
PP_0417 -1.8 -11.4 Anthranilate synthase component 1 compare
PP_4126 -1.8 -2.3 NADH-quinone oxidoreductase subunit I compare
PP_1375 -1.8 -9.6 transcription regulatory protein (pca regulon) compare
PP_1293 -1.7 -2.3 molybdopterin synthase small subunit compare
PP_1208 -1.7 -2.0 conserved protein of unknown function, SlyX family compare
PP_1348 -1.7 -4.6 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4696 -1.6 -1.9 Nitrogen regulation protein NR(I) compare
PP_1386 -1.6 -7.8 Probable efflux pump periplasmic linker TtgA compare
PP_1025 -1.6 -7.1 2-isopropylmalate synthase compare
PP_4799 -1.6 -1.9 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4944 -1.6 -5.7 Carbamoyltransferase compare
PP_5303 -1.6 -4.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1713 -1.5 -3.0 Transcriptional regulator PcaQ compare
PP_5328 -1.5 -4.3 putative phosphate transport system permease protein compare
PP_1079 -1.5 -4.2 Ornithine carbamoyltransferase compare
PP_4917 -1.5 -2.9 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_3924 -1.5 -1.7 conserved protein of unknown function compare
PP_4120 -1.4 -2.6 NADH-quinone oxidoreductase subunit B compare
PP_1994 -1.4 -1.9 tRNA pseudouridine (38-40)synthase compare
PP_2001 -1.4 -7.1 O-succinylhomoserine sulfhydrylase compare
PP_2217 -1.3 -2.1 enoyl-CoA hydratase compare
PP_4695 -1.3 -6.5 Sensory box histidine kinase compare
PP_0902 -1.3 -7.3 integral membrane sensor signal transduction histidine kinase compare
PP_4121 -1.3 -3.0 NADH-quinone oxidoreductase subunit C/D compare
PP_0901 -1.3 -6.1 DNA-binding response regulator compare
PP_3493 -1.3 -5.1 Transcriptional regulator, LysR family compare
PP_3590 -1.3 -4.9 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_4340 -1.3 -2.5 response regulator for chemotactic signal transduction compare
PP_1142 -1.3 -1.5 conserved protein of unknown function compare
PP_2031 -1.2 -2.1 conserved protein of unknown function compare
PP_3102 -1.2 -2.5 conserved protein of unknown function compare
PP_1367 -1.2 -4.1 formyltetrahydrofolate hydrolase compare
PP_0362 -1.2 -7.0 Biotin synthase compare
PP_4379 -1.2 -4.4 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1664 -1.2 -3.6 phosphoribosylglycinamide formyltransferase 1 compare
PP_3110 -1.2 -1.9 protein of unknown function compare
PP_2214 -1.2 -3.7 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_1616 -1.2 -6.1 formaldehyde dehydrogenase, glutathione-dependent conserved
PP_4058 -1.2 -6.6 1,4-alpha-glucan branching enzyme compare
PP_0878 -1.2 -4.9 dipeptide ABC transporter, binding subunit compare
PP_2378 -1.1 -2.0 Fe/S biogenesis protein NfuA compare
PP_3105 -1.1 -2.6 conserved membrane protein of unknown function compare
PP_4701 -1.1 -1.2 glucose-6-phosphate isomerase compare
PP_0585 -1.1 -2.9 putative metal-sensitive transcriptional regulator, MerR family compare
PP_4004 -1.1 -2.4 DNA translocase FtsK compare
PP_2029 -1.1 -1.8 von Willebrand factor type A domain protein compare
PP_3840 -1.1 -1.4 conserved protein of unknown function compare
PP_3902 -1.1 -1.6 conserved protein of unknown function compare
PP_4124 -1.1 -2.1 NADH-quinone oxidoreductase subunit G compare
PP_4622 -1.1 -3.5 Hmg transcriptional repressor compare
PP_4942 -1.0 -1.7 conserved protein of unknown function compare
PP_0787 -1.0 -2.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0117 -1.0 -4.3 Zn(2+) ABC transporter - permease subunit compare
PP_1164 -1.0 -2.3 Transcriptional regulator, LysR family compare
PP_5274 -1.0 -1.2 conserved protein of unknown function compare
PP_4129 -1.0 -2.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5327 -1.0 -4.7 putative phosphate ABC transporter, permease subunit compare
PP_4131 -1.0 -2.8 NADH-quinone oxidoreductase subunit N compare
PP_1216 -1.0 -1.1 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4828 -1.0 -0.8 Precorrin-8X methylmutase compare
PP_0356 -1.0 -4.4 malate synthase G compare
PP_1147 -1.0 -2.3 conserved protein of unknown function compare
PP_1303 -1.0 -4.7 Sulfate adenylyltransferase subunit 2 compare
PP_0905 -1.0 -1.5 conserved exported protein of unknown function compare
PP_3603 -1.0 -4.1 Transcriptional regulator, GntR family compare
PP_5267 -0.9 -1.4 putative cytochrome c5 compare
PP_3649 -0.9 -2.6 Transcriptional regulator, GntR family compare
PP_4342 -0.9 -2.2 flagellar synthesis regulator, putative ATPase compare
PP_5533 -0.9 -1.3 conserved protein of unknown function compare
PP_0339 -0.9 -3.2 Pyruvate dehydrogenase E1 component compare
PP_4941 -0.9 -4.6 conserved exported protein of unknown function compare
PP_4943 -0.9 -0.9 putative Glycosyl transferase compare
PP_1589 -0.9 -5.1 uridylyltransferase compare
PP_1378 -0.9 -5.8 alpha-ketoglutarate permease compare
PP_0345 -0.9 -3.4 putative Heptose kinase WapP compare
PP_5063 -0.9 -3.2 betaine aldehyde dehydrogenase, NAD-dependent compare
PP_2442 -0.9 -2.3 conserved protein of unknown function, DUF480 family compare
PP_0119 -0.9 -2.7 putative zinc uptake regulation protein ZUR compare
PP_3484 -0.9 -3.3 Response regulator receiver protein compare
PP_5227 -0.9 -3.6 diaminopimelate decarboxylase compare
PP_3938 -0.9 -2.0 conserved protein of unknown function compare
PP_0413 -0.9 -6.5 Polyamine ABC transporter, permease protein compare
PP_5329 -0.9 -2.9 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4570 -0.9 -6.2 conserved protein of unknown function compare
PP_1999 -0.9 -1.6 membrane protein required for colicin V production compare
PP_4482 -0.9 -2.8 Transcriptional regulator, AraC family compare
PP_3318 -0.9 -2.1 conserved protein of unknown function compare
PP_0365 -0.9 -5.0 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1832 -0.8 -3.5 putative Oxidase compare
PP_5579 -0.8 -4.2 conserved protein of unknown function compare
PP_1304 -0.8 -4.7 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_5028 -0.8 -1.4 proline iminopeptidase compare
PP_1838 -0.8 -6.2 conserved membrane protein of unknown function compare
PP_3378 -0.8 -1.8 putative 2-ketogluconokinase compare
PP_0381 -0.8 -2.9 Coenzyme PQQ synthesis protein F compare
PP_3300 -0.8 -5.5 Transcriptional regulator, tetR family compare
PP_0513 -0.8 -1.5 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_3505 -0.8 -2.0 conserved protein of unknown function compare
PP_5295 -0.8 -1.4 conserved protein of unknown function compare
PP_2804 -0.8 -3.2 Hydrolase, alpha/beta fold family compare
PP_2336 -0.8 -1.6 aconitate hydratase 1 compare
PP_1186 -0.8 -1.0 two component system DNA-binding transcriptional dual regulator compare
PP_1734 -0.8 -1.2 Probable septum site-determining protein MinC compare
PP_5475 -0.8 -0.9 conserved protein of unknown function compare
PP_4066 -0.8 -2.4 methylglutaconyl-CoA hydratase compare
PP_4874 -0.8 -0.5 50S ribosomal protein L9 compare
PP_4067 -0.8 -4.6 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_0364 -0.8 -4.4 pimeloyl-[acp] methyl ester esterase compare
PP_0025 -0.8 -1.1 hypothetical protein compare


Specific Phenotypes

For 15 genes in this experiment

For carbon source Ferulic Acid in Pseudomonas putida KT2440

For carbon source Ferulic Acid across organisms