Experiment set6IT058 for Pseudomonas putida KT2440

Compare to:

Sodium acetate carbon source

200 most important genes:

  gene name fitness t score description  
PP_0164 -5.1 -6.1 conserved protein of unknown function compare
PP_2371 -4.6 -5.4 Sulphite reductase hemoprotein, beta subunit compare
PP_4364 -4.3 -6.7 putative Anti-sigma F factor antagonist compare
PP_4723 -4.2 -13.0 Carbamoyl-phosphate synthase large chain compare
PP_2370 -4.1 -4.9 conserved protein of unknown function compare
PP_0691 -3.5 -4.8 Glutamate 5-kinase compare
PP_4724 -3.4 -7.3 Carbamoyl-phosphate synthase small chain compare
PP_3999 -3.4 -7.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4909 -3.2 -9.0 phosphoserine phosphatase compare
PP_1635 -3.1 -5.9 DNA-binding response regulator conserved
PP_1695 -2.9 -8.5 putative Sodium-solute symporter/sensory box histidine kinase/response regulator conserved
PP_1654 -2.7 -4.4 cysteine synthase B compare
PP_5155 -2.6 -4.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0127 -2.4 -4.2 Thiol:disulfide interchange protein compare
PP_4699 -2.2 -3.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_3484 -2.2 -6.4 Response regulator receiver protein compare
PP_4126 -2.2 -2.8 NADH-quinone oxidoreductase subunit I compare
PP_4999 -2.1 -2.0 dihydroorotase-like protein compare
PP_4799 -2.1 -2.5 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0290 -2.1 -7.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1986 -2.0 -4.2 3-isopropylmalate dehydratase small subunit compare
PP_0184 -2.0 -5.5 Argininosuccinate lyase compare
PP_0154 -1.9 -11.6 Succinyl-CoA:acetate CoA-transferase (EC 2.8.3.18) (from data) conserved
PP_5185 -1.9 -5.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5289 -1.9 -4.2 Acetylglutamate kinase compare
PP_4122 -1.9 -2.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4890 -1.9 -6.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_5095 -1.9 -1.8 pyrroline-5-carboxylate reductase compare
PP_4701 -1.7 -1.7 glucose-6-phosphate isomerase compare
PP_2000 -1.7 -3.3 amidophosphoribosyl transferase compare
PP_1088 -1.7 -8.1 Argininosuccinate synthase compare
PP_1079 -1.7 -6.1 Ornithine carbamoyltransferase compare
PP_0289 -1.6 -8.1 Imidazoleglycerol-phosphate dehydratase compare
PP_0834 -1.6 -1.5 Sec translocation complex subunit YajC compare
PP_4129 -1.5 -2.7 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4678 -1.4 -10.1 Ketol-acid reductoisomerase compare
PP_5014 -1.4 -3.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_3511 -1.4 -6.4 Branched-chain-amino-acid aminotransferase compare
PP_1988 -1.4 -6.5 3-isopropylmalate dehydrogenase compare
PP_4952 -1.4 -2.2 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_2414 -1.4 -1.1 conserved exported protein of unknown function compare
PP_5000 -1.3 -1.7 peptidase component of the ATP-dependent HslVU protease compare
PP_1099 -1.3 -2.7 Cold shock protein CapB compare
PP_2402 -1.3 -2.5 putative Sensor histidine kinase compare
PP_0293 -1.3 -2.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5128 -1.3 -6.0 Dihydroxy-acid dehydratase compare
PP_1664 -1.3 -4.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_4680 -1.3 -8.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0965 -1.3 -7.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5230 -1.2 -2.3 Tyrosine recombinase XerC compare
PP_0365 -1.2 -6.5 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4696 -1.2 -2.5 Nitrogen regulation protein NR(I) compare
PP_5346 -1.2 -7.0 pyruvate carboxylase subunit B compare
PP_5329 -1.2 -4.0 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0967 -1.2 -6.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0966 -1.2 -6.5 Histidinol dehydrogenase compare
PP_0362 -1.2 -8.0 Biotin synthase compare
PP_0809 -1.2 -6.9 disulfide bond formation protein B compare
PP_1215 -1.2 -0.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_4782 -1.2 -3.9 Phosphomethylpyrimidine kinase compare
PP_1985 -1.1 -3.8 3-isopropylmalate dehydratase large subunit compare
PP_0292 -1.1 -2.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5604 -1.1 -2.4 putative subtilisin-like serine protease compare
PP_4121 -1.1 -3.2 NADH-quinone oxidoreductase subunit C/D compare
PP_5028 -1.1 -2.2 proline iminopeptidase compare
PP_2327 -1.1 -4.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2336 -1.1 -2.4 aconitate hydratase 1 compare
PP_2214 -1.1 -3.8 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_0363 -1.1 -7.4 8-amino-7-oxononanoate synthase compare
PP_5093 -1.1 -0.9 twitching motility protein compare
PP_5359 -1.1 -2.3 CobW/P47K family protein compare
PP_5015 -1.1 -3.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4984 -1.1 -6.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0905 -1.1 -1.6 conserved exported protein of unknown function compare
PP_2328 -1.1 -4.0 Phosphoadenosine phosphosulfate reductase compare
PP_0364 -1.0 -4.8 pimeloyl-[acp] methyl ester esterase compare
PP_0366 -1.0 -5.1 dethiobiotin synthetase compare
PP_0356 -1.0 -4.9 malate synthase G compare
PP_1493 -1.0 -2.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4124 -1.0 -2.5 NADH-quinone oxidoreductase subunit G compare
PP_5347 -1.0 -6.3 pyruvate carboxylase subunit A compare
PP_0957 -1.0 -1.7 D-arabinose 5-phosphate isomerase compare
PP_4004 -1.0 -2.4 DNA translocase FtsK compare
PP_4392 -1.0 -5.1 chemotaxis protein methyltransferase compare
PP_4679 -1.0 -3.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1233 -1.0 -3.7 sulfurtransferase compare
PP_4997 -1.0 -1.8 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_4917 -1.0 -2.6 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_5659 -1.0 -3.2 protein of unknown function compare
PP_1629 -1.0 -3.2 Protein RecA compare
PP_4340 -1.0 -3.5 response regulator for chemotactic signal transduction compare
PP_0888 -0.9 -1.5 Photosynthetic apparatus regulatory protein RegA compare
PP_5104 -0.9 -4.8 thiazole synthase compare
PP_1994 -0.9 -1.7 tRNA pseudouridine (38-40)synthase compare
PP_0735 -0.9 -2.0 molybdopterin-synthase adenylyltransferase compare
PP_5348 -0.9 -5.4 Transcriptional regulator, LysR family compare
PP_1025 -0.9 -6.1 2-isopropylmalate synthase compare
PP_5471 -0.9 -2.0 putative response regulator receiver protein compare
PP_3105 -0.9 -2.4 conserved membrane protein of unknown function compare
PP_5582 -0.9 -1.5 conserved protein of unknown function compare
PP_3505 -0.9 -2.2 conserved protein of unknown function compare
PP_2417 -0.9 -2.8 putative Iron ABC transporter, permease protein compare
PP_5600 -0.9 -2.3 conserved protein of unknown function compare
PP_4130 -0.9 -2.3 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2740 -0.9 -2.3 Transcriptional regulator, MerR family compare
PP_1362 -0.8 -2.4 pyruvate kinase II compare
PP_4993 -0.8 -1.8 Glutathione synthetase compare
PP_4981 -0.8 -2.4 polyisoprene-binding protein, acidic stress response factor compare
PP_1304 -0.8 -5.2 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_5393 -0.8 -1.1 putative metal-binding chaperone compare
PP_3730 -0.8 -1.2 Transcriptional regulatory protein AruR compare
PP_0291 -0.8 -2.3 conserved protein of unknown function compare
PP_4120 -0.7 -1.9 NADH-quinone oxidoreductase subunit B compare
PP_4787 -0.7 -1.8 putative protein with nucleoside triphosphate hydrolase domain compare
PP_4966 -0.7 -2.0 transcriptional regulator of methionine metabolism compare
PP_1348 -0.7 -3.9 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1734 -0.7 -1.4 Probable septum site-determining protein MinC compare
PP_0232 -0.7 -1.2 ATP-binding taurine transporter subunit compare
PP_3258 -0.7 -2.6 conserved protein of unknown function compare
PP_2087 -0.7 -1.4 CmpX protein compare
PP_1713 -0.7 -1.7 Transcriptional regulator PcaQ compare
PP_5094 -0.7 -2.7 putative enzyme with PLP binding domain compare
PP_2153 -0.7 -2.1 conserved protein of unknown function compare
PP_2932 -0.7 -4.5 Amidase family protein compare
PP_2302 -0.7 -2.4 DNA-binding, ATP-dependent protease compare
PP_2341 -0.7 -1.1 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_0440 -0.7 -1.5 Elongation factor Tu-A compare
PP_2804 -0.7 -1.9 Hydrolase, alpha/beta fold family compare
PP_4379 -0.7 -2.8 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1824 -0.7 -1.4 Smr domain protein compare
PP_4835 -0.7 -1.9 conserved exported protein of unknown function compare
PP_4116 -0.7 -4.7 isocitrate lyase compare
PP_4824 -0.7 -2.4 Sensor histidine kinase/response regulator compare
PP_4261 -0.7 -3.4 cation-transporting P-type ATPase compare
PP_5457 -0.6 -2.4 conserved protein of unknown function compare
PP_1468 -0.6 -1.2 Tyrosine recombinase XerD compare
PP_4067 -0.6 -3.4 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_0117 -0.6 -3.0 Zn(2+) ABC transporter - permease subunit compare
PP_5499 -0.6 -2.1 conserved protein of unknown function compare
PP_5519 -0.6 -1.7 conserved protein of unknown function of phage origin compare
PP_1598 -0.6 -2.6 regulatory intramembrane protein RIP zinc protease compare
PP_5617 -0.6 -2.4 conserved protein of unknown function compare
PP_t10 -0.6 -1.0 tRNA-Pro compare
PP_0401 -0.6 -1.5 Ribosomal RNA small subunit methyltransferase A compare
PP_2031 -0.6 -1.3 conserved protein of unknown function compare
PP_4204 -0.6 -1.8 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_2203 -0.6 -1.2 conserved protein of unknown function compare
PP_1044 -0.6 -2.7 Lipoprotein UxpA compare
PP_3318 -0.6 -1.6 conserved protein of unknown function compare
PP_4424 -0.6 -1.7 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_4338 -0.6 -3.7 Chemotaxis histidine kinase CheA compare
PP_2027 -0.6 -2.4 conserved exported protein of unknown function compare
PP_5508 -0.6 -1.0 conserved protein of unknown function compare
PP_4482 -0.6 -2.1 Transcriptional regulator, AraC family compare
PP_0978 -0.6 -2.3 conserved protein of unknown function compare
PP_1055 -0.6 -0.6 Type II secretion pathway protein GspN compare
PP_0319 -0.6 -0.9 conserved protein of unknown function compare
PP_1303 -0.6 -2.9 Sulfate adenylyltransferase subunit 2 compare
PP_3819 -0.6 -2.9 glutathione reductase (NADPH) compare
PP_3773 -0.6 -1.7 conserved protein of unknown function compare
PP_3883 -0.6 -1.4 putative Phage holin compare
PP_1878 -0.6 -3.2 conserved protein of unknown function compare
PP_4925 -0.5 -2.0 conserved protein of unknown function compare
PP_4681 -0.5 -1.9 conserved protein of unknown function compare
PP_2379 -0.5 -2.3 putative cytochrome oxidase biogenesis protein compare
PP_1217 -0.5 -1.3 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2858 -0.5 -1.6 conserved exported protein of unknown function compare
PP_1048 -0.5 -1.5 putative protein secretion protein for export compare
PP_5496 -0.5 -1.8 conserved exported protein of unknown function compare
PP_2217 -0.5 -1.8 enoyl-CoA hydratase compare
PP_5658 -0.5 -2.1 protein of unknown function compare
PP_2299 -0.5 -1.5 Trigger factor compare
PP_0241 -0.5 -1.6 Transporter compare
PP_1672 -0.5 -2.3 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_4902 -0.5 -1.1 Oligoribonuclease compare
PP_5644 -0.5 -1.7 conserved membrane protein of unknown function compare
PP_2291 -0.5 -1.6 conserved protein of unknown function compare
PP_0683 -0.5 -1.8 conserved protein of unknown function compare
PP_4263 -0.5 -2.1 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_0649 -0.5 -2.4 MutT/nudix family protein compare
PP_2475 -0.5 -2.0 Transcriptional regulator, TetR family compare
PP_3648 -0.5 -2.3 Carboxymuconolactone decarboxylase family protein compare
PP_4143 -0.5 -2.4 conserved protein of unknown function compare
PP_5317 -0.5 -1.5 Probable chorismate pyruvate-lyase compare
PP_4471 -0.5 -1.9 Magnesium transporter compare
PP_3508 -0.5 -1.8 Protein CobW compare
PP_2883 -0.5 -0.9 conserved protein of unknown function compare
PP_0007 -0.5 -1.2 conserved hypothetical protein compare
PP_4258 -0.5 -1.8 cytochrome c oxidase subunit, cbb3-type compare
PP_0062 -0.5 -2.2 3-methyl-adenine DNA glycosylase I compare
PP_5198 -0.5 -1.3 conserved protein of unknown function compare
PP_1074 -0.5 -1.8 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_3924 -0.5 -0.9 conserved protein of unknown function compare
PP_2070 -0.5 -1.3 Transcriptional regulator, AraC family compare
PP_5698 -0.5 -2.4 conserved exported protein of unknown function compare
PP_5689 -0.5 -1.9 conserved protein of unknown function compare
PP_3603 -0.5 -2.3 Transcriptional regulator, GntR family compare
PP_5017 -0.5 -0.7 Sec-independent protein translocase protein TatB compare
PP_1633 -0.5 -1.3 conserved exported protein of unknown function compare
PP_4837 -0.5 -1.7 conserved protein of unknown function compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Sodium acetate in Pseudomonas putida KT2440

For carbon source Sodium acetate across organisms