Experiment set6IT054 for Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Compare to:

Br60_phage 15 MOI

200 most important genes:

  gene name fitness t score description  
GFF388 -6.6 -15.4 Lipopolysaccharide 1,2-N-acetylglucosaminetransferase (EC 2.4.1.56) compare
GFF390 -5.5 -3.4 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
GFF3166 -5.3 -3.6 ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase compare
GFF2216 -5.2 -12.4 DNA polymerase I (EC 2.7.7.7) compare
GFF391 -4.2 -3.2 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
GFF1076 -4.0 -4.4 Aerobic respiration control protein arcA compare
GFF392 -3.8 -2.6 ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20) compare
GFF380 -3.3 -6.2 UDP-glucose:(heptosyl) LPS alpha1,3-glucosyltransferase WaaG (EC 2.4.1.-) compare
GFF824 -2.2 -4.6 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
GFF825 -2.1 -3.3 RNA-binding protein Hfq compare
GFF384 -2.0 -3.9 UDP-glucose:(glucosyl)lipopolysaccharide alpha-1,3-glucosyltransferase WaaO (EC 2.4.1.-) compare
GFF4634 -2.0 -8.0 Citrate synthase (si) (EC 2.3.3.1) compare
GFF652 -2.0 -2.5 UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) / UDP-glucose 4-epimerase (EC 5.1.3.2) compare
GFF3901 -1.9 -2.3 Phosphomannomutase (EC 5.4.2.8) compare
GFF192 -1.8 -5.7 'Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41)' transl_table=11 compare
GFF2061 -1.8 -7.1 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
GFF1095 -1.7 -1.2 Putative membrane protein compare
GFF1891 -1.6 -3.5 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
GFF355 -1.6 -2.4 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
GFF3667 -1.4 -1.7 Cytidylate kinase (EC 2.7.4.25) compare
GFF2946 -1.4 -3.1 RNA polymerase sigma-54 factor RpoN compare
GFF3490 -1.3 -7.4 Exodeoxyribonuclease III (EC 3.1.11.2) compare
GFF4646 -1.3 -7.7 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) compare
GFF3890 -1.2 -2.1 dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) compare
GFF4891 -1.2 -5.3 Transport ATP-binding protein CydD compare
GFF4890 -1.2 -5.0 Transport ATP-binding protein CydC compare
GFF3511 -1.2 -1.8 Membrane-bound metal-dependent hydrolase YdjM, induced during SOS response compare
GFF3862 -1.2 -3.1 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) compare
GFF2621 -1.2 -1.7 FIG01045328: hypothetical protein compare
GFF4766 -1.2 -1.3 Invasion protein invH precursor compare
GFF4314 -1.1 -1.0 hypothetical protein compare
GFF1256 -1.1 -3.6 Chromosome (plasmid) partitioning protein ParA compare
GFF4355 -1.1 -1.1 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF3845 -1.1 -2.1 putative cytoplasmic protein compare
GFF2104 -1.1 -2.0 ATP-dependent RNA helicase SrmB compare
GFF389 -1.1 -2.5 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
GFF4596 -1.1 -2.6 Ferric uptake regulation protein FUR compare
GFF645 -1.0 -1.0 Membrane protein associated with oxaloacetate decarboxylase compare
GFF2389 -1.0 -1.5 Trk system potassium uptake protein TrkA compare
GFF1109 -1.0 -2.1 Putative LysR family transcriptional regulator compare
GFF4647 -1.0 -4.3 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) compare
GFF2392 -1.0 -1.7 Peptide deformylase (EC 3.5.1.88) compare
GFF2415 -1.0 -2.5 Nucleoside diphosphate kinase (EC 2.7.4.6) compare
GFF3599 -1.0 -2.0 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
GFF2543 -1.0 -1.4 FIG01045496: hypothetical protein compare
GFF4460 -1.0 -1.8 Putative inner membrane protein compare
GFF1920 -1.0 -0.9 hypothetical protein compare
GFF2785 -1.0 -1.4 FIG01045804: hypothetical protein compare
GFF4341 -1.0 -2.1 Probable secreted protein compare
GFF2784 -0.9 -1.9 GTP-binding and nucleic acid-binding protein YchF compare
GFF789 -0.9 -4.5 DNA primase (EC 2.7.7.-), phage-associated compare
GFF242 -0.9 -1.3 Magnesium and cobalt transport protein CorA compare
GFF1014 -0.9 -1.0 PTS system, mannose-specific IIC component (EC 2.7.1.69) compare
GFF1334 -0.9 -0.9 Uncharacterized protein YohL compare
GFF4409 -0.9 -6.6 YbbM seven transmembrane helix protein compare
GFF3150 -0.9 -5.3 UPF0441 protein ygiB compare
GFF2387 -0.9 -1.7 transcriptional regulator, MerR family compare
GFF684 -0.9 -1.1 Putative membrane protein compare
GFF1941 -0.9 -1.8 FIG074102: hypothetical protein compare
GFF2954 -0.9 -5.7 Aerobic respiration control sensor protein arcB (EC 2.7.3.-) compare
GFF1634 -0.8 -1.3 Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-) compare
GFF3041 -0.8 -1.1 hypothetical protein compare
GFF2477 -0.8 -3.6 Translation elongation factor LepA compare
GFF1620 -0.8 -1.0 Copper resistance protein CopC compare
GFF1848 -0.8 -1.0 FIG074102: hypothetical protein compare
GFF4061 -0.8 -0.6 putative periplasmic protein compare
GFF3940 -0.8 -0.7 Propanediol utilization polyhedral body protein PduJ compare
GFF757 -0.8 -1.7 putative sensory transduction regulator compare
GFF4218 -0.8 -1.1 hypothetical protein compare
GFF4837 -0.8 -4.0 'GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2)' transl_table=11 compare
GFF4182 -0.8 -4.1 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) compare
GFF2758 -0.8 -0.9 FIG01045187: hypothetical protein compare
GFF2154 -0.8 -2.7 L(+)-tartrate dehydratase beta subunit (EC 4.2.1.32) compare
GFF4408 -0.8 -3.7 YbbL ABC transporter ATP-binding protein compare
GFF3538 -0.8 -0.8 hypothetical protein compare
GFF3378 -0.8 -1.1 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
GFF121 -0.8 -2.2 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF4208 -0.7 -1.2 FIG01046757: hypothetical protein compare
GFF443 -0.7 -1.2 FIG01045230: hypothetical protein compare
GFF2497 -0.7 -1.9 3-hydroxypropionate dehydrogenase (EC 1.1.1.298) compare
GFF3504 -0.7 -1.8 PTS system, cellobiose-specific IIA component (EC 2.7.1.69) compare
GFF2620 -0.7 -0.9 FIG01045674: hypothetical protein compare
GFF4719 -0.7 -1.4 FIG01045287: hypothetical protein compare
GFF1716 -0.7 -3.3 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
GFF1005 -0.7 -1.7 FIG00638610: hypothetical protein compare
GFF1900 -0.7 -3.8 Acetate kinase (EC 2.7.2.1) compare
GFF387 -0.7 -1.5 Lipopolysaccharide core biosynthesis protein RfaZ compare
GFF4575 -0.7 -2.0 Magnesium and cobalt efflux protein CorC compare
GFF1433 -0.7 -1.3 Putative inner membrane or exported protein compare
GFF906 -0.7 -0.9 FIG01047835: hypothetical protein compare
GFF2072 -0.7 -2.3 Ethanolamine ammonia-lyase light chain (EC 4.3.1.7) compare
GFF4354 -0.7 -2.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF2737 -0.7 -1.1 YciL protein compare
GFF648 -0.7 -3.5 Phosphoglycerate mutase (EC 5.4.2.1) compare
GFF2203 -0.7 -5.2 Origin specific replication initiation factor #replication protein O compare
GFF987 -0.7 -0.9 FIG00637915: hypothetical protein compare
GFF667 -0.7 -1.6 Urocanate hydratase (EC 4.2.1.49) compare
GFF4220 -0.7 -3.0 Glycerol dehydratase reactivation factor large subunit compare
GFF2208 -0.7 -2.8 DNA-damage-inducible protein I compare
GFF1143 -0.7 -1.0 FIG074102: hypothetical protein compare
GFF2410 -0.7 -2.6 Mlr7403 protein compare
GFF2809 -0.7 -1.8 FIG074102: hypothetical protein compare
GFF3569 -0.7 -1.3 Proline iminopeptidase (EC 3.4.11.5) compare
GFF1750 -0.7 -1.7 GTPase and tRNA-U34 5-formylation enzyme TrmE compare
GFF2475 -0.7 -1.1 Ribonuclease III (EC 3.1.26.3) compare
GFF3533 -0.7 -1.9 FIG00638687: hypothetical protein compare
GFF985 -0.7 -1.1 Isoaspartyl dipeptidase (EC 3.4.19.5) @ Asp-X dipeptidase compare
GFF4224 -0.7 -1.5 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF2733 -0.7 -1.1 Membrane protein YciC, linked to IspA compare
GFF2825 -0.7 -1.0 FIG00638134: hypothetical protein compare
GFF3050 -0.7 -1.1 UPF0301 protein YqgE compare
GFF3426 -0.7 -1.7 Virulence protein MsgA compare
GFF1915 -0.6 -1.6 Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1) compare
GFF3580 -0.6 -3.3 Transcriptional regulator, MerR family, associated with photolyase compare
GFF1818 -0.6 -1.5 Nitrate reductase cytochrome c550-type subunit compare
GFF454 -0.6 -1.6 Cold shock protein CspA compare
GFF269 -0.6 -2.1 NAD(P)H-flavin reductase (EC 1.5.1.29) (EC 1.16.1.3) compare
GFF788 -0.6 -3.2 ATP-dependent RNA helicase YejH compare
GFF4244 -0.6 -0.7 Putative outer membrane lipoprotein compare
GFF1074 -0.6 -1.1 putative inner membrane protein compare
GFF4732 -0.6 -1.2 SPI1-associated transcriptional regulator SprB compare
GFF3308 -0.6 -1.3 Sialic acid-induced transmembrane protein YjhT(NanM), possible mutarotase compare
GFF1499 -0.6 -1.2 Ribosome-binding factor A compare
GFF1411 -0.6 -2.9 Diacylglycerol kinase (EC 2.7.1.107) compare
GFF4616 -0.6 -1.2 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
GFF122 -0.6 -3.4 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF2704 -0.6 -1.1 'Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)' transl_table=11 compare
GFF661 -0.6 -2.9 6-phosphogluconolactonase (EC 3.1.1.31) compare
GFF2433 -0.6 -2.4 Iron binding protein IscA for iron-sulfur cluster assembly compare
GFF664 -0.6 -2.1 Formiminoglutamase (EC 3.5.3.8) compare
GFF3985 -0.6 -0.6 Integrase compare
GFF4433 -0.6 -2.5 Ureidoglycolate dehydrogenase (EC 1.1.1.154) compare
GFF1736 -0.6 -0.6 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
GFF2492 -0.6 -1.2 Putative transport protein compare
GFF1094 -0.6 -2.9 FIG01045823: hypothetical protein compare
GFF1025 -0.6 -2.4 Putative regulator compare
GFF3990 -0.6 -0.8 hypothetical protein compare
GFF3830 -0.6 -0.5 Uncharacterized protein YehA precursor compare
GFF2864 -0.6 -0.9 Mobile element protein compare
GFF4522 -0.6 -1.0 Regulator of nucleoside diphosphate kinase compare
GFF2454 -0.6 -1.9 Nitrogen regulatory protein P-II compare
GFF4462 -0.6 -1.8 Bactoprenol-linked glucose translocase compare
GFF3515 -0.6 -0.8 FIG00637864: hypothetical protein compare
GFF109 -0.6 -1.5 DeoR family transcriptional regulator probably related to glycerate, glycolaldehyde metabolism compare
GFF2536 -0.6 -1.3 RidA/YER057c/UK114 superfamily, group 7, YjgH-like protein compare
GFF745 -0.6 -2.1 Deoxyribose operon repressor, DeoR family compare
GFF3151 -0.6 -2.6 Similarity with glutathionylspermidine synthase (EC 6.3.1.8), group 1 compare
GFF4138 -0.6 -1.1 PTS system, glucitol/sorbitol-specific IIA component (EC 2.7.1.69) compare
GFF1792 -0.6 -0.9 Spermidine export protein MdtJ compare
GFF3495 -0.6 -1.8 Succinylarginine dihydrolase (EC 3.5.3.23) compare
GFF2873 -0.6 -0.8 hypothetical protein compare
GFF2813 -0.6 -1.2 YcgN (Fragment) compare
GFF2942 -0.6 -1.5 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) compare
GFF680 -0.5 -1.4 Molybdenum cofactor biosynthesis protein MoaC compare
GFF1650 -0.5 -1.2 FIG01046209: inner membrane protein compare
GFF513 -0.5 -3.6 Glutathione reductase (EC 1.8.1.7) compare
GFF1119 -0.5 -1.6 Na+/H+ antiporter NhaA type compare
GFF2583 -0.5 -0.7 FIG00638150: hypothetical protein compare
GFF1889 -0.5 -3.2 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
GFF3733 -0.5 -1.6 Phage tail fiber protein compare
GFF928 -0.5 -2.7 Endoribonuclease L-PSP compare
GFF4118 -0.5 -1.0 tRNA-Thr-CGT compare
GFF3926 -0.5 -1.6 UPF0265 protein YeeX compare
GFF119 -0.5 -0.5 hypothetical protein compare
GFF2869 -0.5 -1.2 Permease of the drug/metabolite transporter (DMT) superfamily compare
GFF1600 -0.5 -1.5 HAD-superfamily hydrolase, subfamily IA compare
GFF3551 -0.5 -2.5 Putative transport system permease protein compare
GFF3632 -0.5 -1.4 Transcriptional regulator SlyA compare
GFF2537 -0.5 -0.8 hypothetical protein compare
GFF2079 -0.5 -1.7 Ethanolamine utilization polyhedral-body-like protein EutN compare
GFF2269 -0.5 -1.0 hypothetical protein compare
GFF787 -0.5 -1.4 FIG00642546: hypothetical protein compare
GFF1972 -0.5 -2.7 Glucokinase (EC 2.7.1.2) compare
GFF2067 -0.5 -2.3 Putative membrane protein compare
GFF2895 -0.5 -0.6 Peptidyl-prolyl cis-trans isomerase PpiC (EC 5.2.1.8) compare
GFF4250 -0.5 -0.6 Putative copper chaperone compare
GFF3112 -0.5 -1.3 Putative membrane protein compare
GFF1221 -0.5 -0.9 hypothetical protein compare
GFF2149 -0.5 -3.4 Malate dehydrogenase (EC 1.1.1.37) compare
GFF1806 -0.5 -1.4 Fumarate hydratase class II (EC 4.2.1.2) compare
GFF3607 -0.5 -1.4 Type III secretion protein (YscP) compare
GFF559 -0.5 -0.9 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) compare
GFF2094 -0.5 -1.4 Putative outer membrane lipoprotein compare
GFF2199 -0.5 -1.7 FIG01045596: hypothetical protein compare
GFF2839 -0.5 -1.1 FIG00638740: hypothetical protein compare
GFF3903 -0.5 -3.1 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) compare
GFF183 -0.5 -3.5 RNA polymerase associated protein RapA (EC 3.6.1.-) compare
GFF2570 -0.5 -1.7 Respiratory nitrate reductase delta chain (EC 1.7.99.4) compare
GFF3270 -0.5 -1.9 FIG01046223: hypothetical protein compare
GFF4227 -0.5 -3.1 Putative LysR family transcriptional regulator compare
GFF1510 -0.5 -1.5 FIG139552: Putative protease compare
GFF3427 -0.5 -1.9 Probable lipoprotein envE precursor compare
GFF4470 -0.5 -1.6 Putative ATPase involved in DNA repair compare
GFF2425 -0.5 -1.3 FIG074102: hypothetical protein compare
GFF1045 -0.5 -2.3 Phosphopentomutase (EC 5.4.2.7) compare
GFF3887 -0.5 -2.4 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
GFF27 -0.5 -0.9 Copper homeostasis protein CutF precursor / Lipoprotein NlpE involeved in surface adhesion compare
GFF3828 -0.5 -0.6 Uncharacterized fimbrial chaperone YehC precursor compare
GFF4223 -0.5 -2.4 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF3047 -0.5 -3.0 Endonuclease I precursor (EC 3.1.21.1) @ Extracellular deoxyribonuclease Dns (EC 3.1.21.-) compare


Specific Phenotypes

None in this experiment

For Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 in phage experiments

For phage Br60_phage across organisms